Guide to the Human Genome
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Name: LOC100287438 Sequence: fasta or formatted (259aa) NCBI GI: 239745378
Description:

PREDICTED: hypothetical protein XP_002343450

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.1         34           4
 C cysteine            5.8         15           2
 D aspartate           2.7          7           2
 E glutamate           1.9          5           1
 F phenylalanine       1.2          3           1
 G glycine             6.6         17           3
 H histidine           3.1          8           1
 I isoleucine          1.9          5           1
 K lysine              0.4          1           1
 L leucine             7.7         20           2
 M methionine          5.0         13           2
 N asparagine          0.0          0           0
 P proline             7.3         19           4
 Q glutamine           3.9         10           2
 R arginine            5.8         15           2
 S serine             13.5         35           3
 T threonine           7.3         19           2
 V valine              8.5         22           1
 W tryptophan          3.5          9           2
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343450 
LOC100290577          1.000   PREDICTED: hypothetical protein XP_002347620 
AMOT                  0.033   angiomotin isoform 2 
AMOT                  0.033   angiomotin isoform 1 
MUC16                 0.023   mucin 16 
B3GALT6               0.016   beta-1,3-galactosyltransferase 6 
MUC5AC                0.016   mucin 5AC 
MUC5B                 0.016   mucin 5, subtype B, tracheobronchial 
LOC100293121          0.016   PREDICTED: hypothetical protein 
LOC100288990          0.016   PREDICTED: hypothetical protein 
LOC100288990          0.016   PREDICTED: hypothetical protein XP_002343714 
LOC730032             0.014   PREDICTED: similar to Rho guanine nucleotide exchan...
C1orf167              0.014   PREDICTED: chromosome 1 open reading frame 167 [Hom...
C1orf167              0.014   PREDICTED: chromosome 1 open reading frame 167 [Hom...
C1orf167              0.014   PREDICTED: hypothetical protein LOC284498 
WASF1                 0.012   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.012   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.012   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.012   Wiskott-Aldrich syndrome protein family member 1 [Hom...
SSPO                  0.012   SCO-spondin 
KRTAP10-1             0.012   keratin associated protein 10-1 
LOC100290023          0.012   PREDICTED: hypothetical protein XP_002348147 
KRTAP10-11            0.012   keratin associated protein 10-11 
CXorf57               0.010   hypothetical protein LOC55086 
C9orf69               0.010   hypothetical protein LOC90120 
NACAD                 0.010   NAC alpha domain containing 
LOC100133915          0.010   PREDICTED: hypothetical protein 
NACAD                 0.010   PREDICTED: NAC alpha domain containing 
LOC100289743          0.010   PREDICTED: hypothetical protein XP_002348163 
NACAD                 0.010   PREDICTED: NAC alpha domain containing 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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