Guide to the Human Genome
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Name: CXorf57 Sequence: fasta or formatted (855aa) NCBI GI: 193804923
Description:

hypothetical protein LOC55086

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         37           2
 C cysteine            1.6         14           1
 D aspartate           4.9         42           2
 E glutamate           6.4         55           2
 F phenylalanine       2.8         24           1
 G glycine             5.3         45           2
 H histidine           2.3         20           1
 I isoleucine          7.6         65           4
 K lysine              6.0         51           3
 L leucine             7.8         67           3
 M methionine          1.6         14           1
 N asparagine          5.0         43           2
 P proline             7.5         64           2
 Q glutamine           4.9         42           1
 R arginine            6.4         55           2
 S serine              8.0         68           3
 T threonine           5.1         44           3
 V valine              6.4         55           2
 W tryptophan          1.5         13           1
 Y tyrosine            4.3         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55086 
KTN1                  0.005   kinectin 1 isoform a 
KTN1                  0.005   kinectin 1 isoform c 
KTN1                  0.005   kinectin 1 isoform a 
ZC3H12C               0.005   zinc finger CCCH-type containing 12C 
KTN1                  0.005   kinectin 1 isoform b 
CDC20                 0.004   cell division cycle 20 
ZBTB2                 0.004   zinc finger and BTB domain containing 2 
FAM75C1               0.004   family with sequence similarity 75, member C1 [Homo...
RAB11FIP1             0.004   RAB11 family interacting protein 1 isoform 3 
RAB11FIP1             0.004   RAB11 family interacting protein 1 isoform 1 
KDM1                  0.003   amine oxidase (flavin containing) domain 2 isoform a...
KDM1                  0.003   amine oxidase (flavin containing) domain 2 isoform b...
AFF3                  0.003   AF4/FMR2 family, member 3 isoform 2 
FREM2                 0.003   FRAS1-related extracellular matrix protein 2 precurs...
LOC100290577          0.003   PREDICTED: hypothetical protein XP_002347620 
LOC100287438          0.003   PREDICTED: hypothetical protein XP_002343450 
AFF2                  0.003   fragile X mental retardation 2 
CMYA5                 0.003   cardiomyopathy associated 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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