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Search of human proteins with 239745183
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745183 PREDICTED: hypothetical protein XP_002343384 [Homo
sapiens]
(277 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756342 PREDICTED: hypothetical protein XP_002344885 [Homo ... 562 e-160
gi|239750821 PREDICTED: hypothetical protein [Homo sapiens] 562 e-160
gi|239745183 PREDICTED: hypothetical protein XP_002343384 [Homo ... 562 e-160
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 37 0.019
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 37 0.019
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 37 0.019
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 36 0.042
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 36 0.042
gi|55956910 meningioma 1 [Homo sapiens] 36 0.042
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 35 0.072
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 35 0.072
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 35 0.072
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 35 0.072
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 35 0.072
gi|239755585 PREDICTED: hypothetical protein [Homo sapiens] 34 0.12
gi|189027090 cytoplasmic polyadenylation element binding protein... 34 0.12
gi|12751477 forkhead box L2 [Homo sapiens] 34 0.16
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 34 0.16
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 34 0.16
gi|4505777 PHD finger protein 1 isoform a [Homo sapiens] 33 0.21
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 33 0.21
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ... 33 0.21
gi|13994190 frizzled 8 [Homo sapiens] 33 0.21
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 33 0.21
gi|239749439 PREDICTED: similar to transcription factor 23 [Homo... 33 0.27
gi|239743573 PREDICTED: similar to transcription factor 23 [Homo... 33 0.27
gi|123173757 RAVER1 [Homo sapiens] 33 0.27
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 33 0.27
gi|27262638 sperm associated antigen 1 [Homo sapiens] 33 0.27
gi|27262636 sperm associated antigen 1 [Homo sapiens] 33 0.27
>gi|239756342 PREDICTED: hypothetical protein XP_002344885 [Homo
sapiens]
Length = 277
Score = 562 bits (1448), Expect = e-160
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MQSRKSSRHSVPQLFWEHLPVLVSSSGCPSKRITNLLSIFATSNKTQSFPEAGLLVEEIP 60
MQSRKSSRHSVPQLFWEHLPVLVSSSGCPSKRITNLLSIFATSNKTQSFPEAGLLVEEIP
Sbjct: 1 MQSRKSSRHSVPQLFWEHLPVLVSSSGCPSKRITNLLSIFATSNKTQSFPEAGLLVEEIP 60
Query: 61 DEAQQVALSTQGSYPLNDVCLPSDTICCSVGRPYLVILASLPEALSGLQPAAEAAVVGLL 120
DEAQQVALSTQGSYPLNDVCLPSDTICCSVGRPYLVILASLPEALSGLQPAAEAAVVGLL
Sbjct: 61 DEAQQVALSTQGSYPLNDVCLPSDTICCSVGRPYLVILASLPEALSGLQPAAEAAVVGLL 120
Query: 121 LVDLFLVRVHQQQEVRIALFQPPAGHFGALDLALQLGHLLLKQDVAGGDAPVVEGEDDDH 180
LVDLFLVRVHQQQEVRIALFQPPAGHFGALDLALQLGHLLLKQDVAGGDAPVVEGEDDDH
Sbjct: 121 LVDLFLVRVHQQQEVRIALFQPPAGHFGALDLALQLGHLLLKQDVAGGDAPVVEGEDDDH 180
Query: 181 HQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEG 240
HQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEG
Sbjct: 181 HQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEG 240
Query: 241 GGGLTGRLRAGEGGGAASRRSLPAPLLKSGQNAFRRL 277
GGGLTGRLRAGEGGGAASRRSLPAPLLKSGQNAFRRL
Sbjct: 241 GGGLTGRLRAGEGGGAASRRSLPAPLLKSGQNAFRRL 277
>gi|239750821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 562 bits (1448), Expect = e-160
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MQSRKSSRHSVPQLFWEHLPVLVSSSGCPSKRITNLLSIFATSNKTQSFPEAGLLVEEIP 60
MQSRKSSRHSVPQLFWEHLPVLVSSSGCPSKRITNLLSIFATSNKTQSFPEAGLLVEEIP
Sbjct: 1 MQSRKSSRHSVPQLFWEHLPVLVSSSGCPSKRITNLLSIFATSNKTQSFPEAGLLVEEIP 60
Query: 61 DEAQQVALSTQGSYPLNDVCLPSDTICCSVGRPYLVILASLPEALSGLQPAAEAAVVGLL 120
DEAQQVALSTQGSYPLNDVCLPSDTICCSVGRPYLVILASLPEALSGLQPAAEAAVVGLL
Sbjct: 61 DEAQQVALSTQGSYPLNDVCLPSDTICCSVGRPYLVILASLPEALSGLQPAAEAAVVGLL 120
Query: 121 LVDLFLVRVHQQQEVRIALFQPPAGHFGALDLALQLGHLLLKQDVAGGDAPVVEGEDDDH 180
LVDLFLVRVHQQQEVRIALFQPPAGHFGALDLALQLGHLLLKQDVAGGDAPVVEGEDDDH
Sbjct: 121 LVDLFLVRVHQQQEVRIALFQPPAGHFGALDLALQLGHLLLKQDVAGGDAPVVEGEDDDH 180
Query: 181 HQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEG 240
HQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEG
Sbjct: 181 HQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEG 240
Query: 241 GGGLTGRLRAGEGGGAASRRSLPAPLLKSGQNAFRRL 277
GGGLTGRLRAGEGGGAASRRSLPAPLLKSGQNAFRRL
Sbjct: 241 GGGLTGRLRAGEGGGAASRRSLPAPLLKSGQNAFRRL 277
>gi|239745183 PREDICTED: hypothetical protein XP_002343384 [Homo
sapiens]
Length = 277
Score = 562 bits (1448), Expect = e-160
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MQSRKSSRHSVPQLFWEHLPVLVSSSGCPSKRITNLLSIFATSNKTQSFPEAGLLVEEIP 60
MQSRKSSRHSVPQLFWEHLPVLVSSSGCPSKRITNLLSIFATSNKTQSFPEAGLLVEEIP
Sbjct: 1 MQSRKSSRHSVPQLFWEHLPVLVSSSGCPSKRITNLLSIFATSNKTQSFPEAGLLVEEIP 60
Query: 61 DEAQQVALSTQGSYPLNDVCLPSDTICCSVGRPYLVILASLPEALSGLQPAAEAAVVGLL 120
DEAQQVALSTQGSYPLNDVCLPSDTICCSVGRPYLVILASLPEALSGLQPAAEAAVVGLL
Sbjct: 61 DEAQQVALSTQGSYPLNDVCLPSDTICCSVGRPYLVILASLPEALSGLQPAAEAAVVGLL 120
Query: 121 LVDLFLVRVHQQQEVRIALFQPPAGHFGALDLALQLGHLLLKQDVAGGDAPVVEGEDDDH 180
LVDLFLVRVHQQQEVRIALFQPPAGHFGALDLALQLGHLLLKQDVAGGDAPVVEGEDDDH
Sbjct: 121 LVDLFLVRVHQQQEVRIALFQPPAGHFGALDLALQLGHLLLKQDVAGGDAPVVEGEDDDH 180
Query: 181 HQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEG 240
HQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEG
Sbjct: 181 HQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEG 240
Query: 241 GGGLTGRLRAGEGGGAASRRSLPAPLLKSGQNAFRRL 277
GGGLTGRLRAGEGGGAASRRSLPAPLLKSGQNAFRRL
Sbjct: 241 GGGLTGRLRAGEGGGAASRRSLPAPLLKSGQNAFRRL 277
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 37.0 bits (84), Expect = 0.019
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 187 HERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGG 242
H + A PPV P H A++ LGA P P W+ + P A GGG
Sbjct: 161 HRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGG 216
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 37.0 bits (84), Expect = 0.019
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 187 HERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGG 242
H + A PPV P H A++ LGA P P W+ + P A GGG
Sbjct: 164 HRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGG 219
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 37.0 bits (84), Expect = 0.019
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 187 HERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGG 242
H + A PPV P H A++ LGA P P W+ + P A GGG
Sbjct: 164 HRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGG 219
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 35.8 bits (81), Expect = 0.042
Identities = 31/80 (38%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 183 QHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRS-PGLGWSCPADTAPGPAEGG 241
Q H ERG P H A + P+ P G+ PGL S A G A G
Sbjct: 121 QAHDCERGGGGRPS------HRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGA 174
Query: 242 GGLTGRLRAGEGGGAASRRS 261
GGL G AG GGGA R S
Sbjct: 175 GGLLGEGAAG-GGGAHLRHS 193
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 35.8 bits (81), Expect = 0.042
Identities = 51/167 (30%), Positives = 61/167 (36%), Gaps = 29/167 (17%)
Query: 107 GLQPAAEAAVVGLLLVDLFLVRVHQQQEVRIALFQPPAGHFGALDLALQLGHLLLKQDVA 166
GLQ A AV+ + D R + E+R+ L P G L + + LL V
Sbjct: 184 GLQQAPVDAVIAASVQDAS--RGQRGAELRLDLVHGPWGRGKELKILV-----LLLLPVQ 236
Query: 167 GGDAPVVEGEDDDHHQQHHQHERGQ---AASPPVGPETHHGAKS---GCTLGASPQTPAG 220
G VE Q HQHERGQ P G HG++ T TPA
Sbjct: 237 SGQQRQVE-----QLQHRHQHERGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAA 291
Query: 221 RSPGLGWSCPADTAPGPAEGGGG--LTGRLRAGEGGGAASRRSLPAP 265
SP L P PAE G RA A+RR P P
Sbjct: 292 ASPDL---------PQPAERSRGEPRPAEPRAPPRPPPAARRPPPPP 329
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 35.8 bits (81), Expect = 0.042
Identities = 33/113 (29%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 167 GGDAPVVEGEDDDHHQQHHQHERGQAASPPVGPETHHGAK----SGCTLGASPQTPAGRS 222
GG P H QHH H G P G HG + G G Q P
Sbjct: 93 GGQQPHHGHPGSHHPHQHHPHFGGNFGGPDPGASCLHGGRLLGYGGAAGGLGSQPPFAE- 151
Query: 223 PGLGWSCPADTAPGPAEGGGGLTGRLRAGEGGGAASRRSLPAPLLKSGQNAFR 275
G+ A+ + GP G G L GA+S ++PAP L Q+ R
Sbjct: 152 ---GYEHMAE-SQGPESFGPQRPGNLPDFHSSGASS-HAVPAPCLPLDQSPNR 199
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 35.0 bits (79), Expect = 0.072
Identities = 51/166 (30%), Positives = 61/166 (36%), Gaps = 29/166 (17%)
Query: 107 GLQPAAEAAVVGLLLVDLFLVRVHQQQEVRIALFQPPAGHFGALDLALQLGHLLLKQDVA 166
GLQ A AV+ + D R + E+R+ L P G L + + LL V
Sbjct: 184 GLQQAPVDAVIAASVQDAS--RGQRGAELRLDLVHGPWGRGKELKILV-----LLLLPVQ 236
Query: 167 GGDAPVVEGEDDDHHQQHHQHERGQ---AASPPVGPETHHGAKS---GCTLGASPQTPAG 220
G VE Q HQHERGQ P G HG++ T TPA
Sbjct: 237 SGQQRQVE-----QLQHRHQHERGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAA 291
Query: 221 RSPGLGWSCPADTAPGPAEGGGG--LTGRLRAGEGGGAASRRSLPA 264
SP L P PAE G RA A+RR PA
Sbjct: 292 ASPDL---------PQPAERSRGEPRPAEPRAPPRPPPAARRPPPA 328
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 35.0 bits (79), Expect = 0.072
Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 180 HHQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAE 239
H+ HH H G HH S AG + G G PA +A G
Sbjct: 180 HYHHHHHHAAG---------HHHHPTAGAPGAAGSAAASAGGAGGAGGGGPA-SAGGGGG 229
Query: 240 GGGGLTGRLRAGEGG 254
GGGG G AG GG
Sbjct: 230 GGGGGGGGGAAGAGG 244
Score = 28.1 bits (61), Expect = 8.8
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 192 AASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGRLRAG 251
AA GP HH P +PG S A GGGG G
Sbjct: 172 AAQSGAGPHYHHHHHHAA---GHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGG 228
Query: 252 EGGG 255
GGG
Sbjct: 229 GGGG 232
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 35.0 bits (79), Expect = 0.072
Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 180 HHQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAE 239
H+ HH H G HH S AG + G G PA +A G
Sbjct: 180 HYHHHHHHAAG---------HHHHPTAGAPGAAGSAAASAGGAGGAGGGGPA-SAGGGGG 229
Query: 240 GGGGLTGRLRAGEGG 254
GGGG G AG GG
Sbjct: 230 GGGGGGGGGAAGAGG 244
Score = 28.1 bits (61), Expect = 8.8
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 192 AASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGRLRAG 251
AA GP HH P +PG S A GGGG G
Sbjct: 172 AAQSGAGPHYHHHHHHAA---GHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGG 228
Query: 252 EGGG 255
GGG
Sbjct: 229 GGGG 232
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 35.0 bits (79), Expect = 0.072
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 180 HHQQHHQH----ERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAP 235
HH HH H E G P A +G A+ A PG G P
Sbjct: 100 HHHHHHHHHQALEPGDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGP 159
Query: 236 --GPAEGGGGLTGRLRAGEGGGAASRRSLPAPLLKS 269
GP GGGG G G GGG + P P + S
Sbjct: 160 GGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHS 195
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 35.0 bits (79), Expect = 0.072
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 185 HQHERGQAASPPVGPETHHGAK---SGCTLGASPQTPAG-----RSPGLGWSCPADTAPG 236
H+ R +GP GA+ G + GASP++P G + L S P A G
Sbjct: 283 HRRHRAWMHQKGLGPRGQDGARPPGEGSSTGASPESPPGAEAVPEAAVLEVSEPPAEAVG 342
Query: 237 PAEGGGGL-TGRLRAGEGGG 255
A G L G LR G GGG
Sbjct: 343 EASGSCPLRPGELRGGGGGG 362
>gi|239755585 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 34.3 bits (77), Expect = 0.12
Identities = 45/142 (31%), Positives = 56/142 (39%), Gaps = 23/142 (16%)
Query: 107 GLQPAAEAAVVGLLLVDLFLVRVHQQQEVRIALFQPPAGHFGALDLALQLGHLLLKQDVA 166
GLQ A AV+ + D R + E+R+ L P G L + + LL V
Sbjct: 184 GLQQAPVDAVIAASVQDAS--RGQRGAELRLDLVHGPWGRGKELKILV-----LLLLPVQ 236
Query: 167 GGDAPVVEGEDDDHHQQHHQHERGQ---AASPPVGPETHHGAKS---GCTLGASPQTPAG 220
G VE Q HQHERGQ P G HG++ T TPA
Sbjct: 237 SGQQRQVE-----QLQHRHQHERGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAA 291
Query: 221 RSPGLGWSCPADTA---PGPAE 239
SP L PA+ + P PAE
Sbjct: 292 ASPDL--PQPAERSRGEPRPAE 311
>gi|189027090 cytoplasmic polyadenylation element binding protein 4
[Homo sapiens]
Length = 729
Score = 34.3 bits (77), Expect = 0.12
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 180 HHQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAP---G 236
HH HQ +R ASP P TH A + SP + P+ T
Sbjct: 241 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS 300
Query: 237 PAEGG----GGLTGR-LRAGEGGGAASRRSLPAPLLKS 269
P GG GG GR R G GG S+ +PL K+
Sbjct: 301 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSI-SPLKKN 337
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 33.9 bits (76), Expect = 0.16
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 168 GDAPVVEGEDDDHHQQHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGW 227
G P H H H AA+PP P HHGA + SP +PA +P
Sbjct: 278 GGPPAAPPPPPHPHPHPHAHHLHAAAAPPPAPP-HHGAAAPPPGQLSPASPATAAP---- 332
Query: 228 SCPADT-APG 236
PA T APG
Sbjct: 333 PAPAPTSAPG 342
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 33.9 bits (76), Expect = 0.16
Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Query: 189 RGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGRL 248
R A PP G ++G P P R+PG G + +P P G G
Sbjct: 80 RSAAWGPPARASRAAGRRAG------PAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVE 133
Query: 249 RAGEGGGAAS-------RRSLPAPL----LKSGQNAFRR 276
RAG A+S R LP P L +G A RR
Sbjct: 134 RAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 33.9 bits (76), Expect = 0.16
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 183 QHHQHERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSP 223
Q +H G+ ++P + PE G KSG + + P TP SP
Sbjct: 1515 QEFEHVNGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPASP 1555
>gi|4505777 PHD finger protein 1 isoform a [Homo sapiens]
Length = 457
Score = 33.5 bits (75), Expect = 0.21
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 195 PPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGGGL-----TGRLR 249
PPV P T GA + T G +P G P + A G + G G + R
Sbjct: 337 PPVEPPTGDGALTRAGPWGRGLTSPGEAPEAGARAPEEEAEGESGGAGATLSSAQSARAP 396
Query: 250 AGEGGGAASRRSLPAP 265
EG G+++ + AP
Sbjct: 397 GAEGAGSSAEGTAAAP 412
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 33.5 bits (75), Expect = 0.21
Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 178 DDHHQQHHQHERGQAASPPVGPETHHGAKSGCTLGASP-------QTPAGRSPGLGWS-- 228
D H ++H + ERG+ A+ P +LGA P AG LG +
Sbjct: 1589 DSHKRKHEKQERGEPAAEGPAPGPPISLDGSLSLGAEPGSLLFLQSAAAGLGLALGDAGD 1648
Query: 229 --CPADTAPGPAEGGGGLTGRLRAGEGGGAASRRSLPAP 265
P APGP EG AGE L P
Sbjct: 1649 PGPPDAAAPGPREGAAAAAA--AAGESSQEDEEEELELP 1685
Score = 30.0 bits (66), Expect = 2.3
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 189 RGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGRL 248
RG + P P SG A+P TP + G G S P A PA + R+
Sbjct: 808 RGSTSLPVGTPSLLGAVSSGSAASATPDTPTLVASGAGDSAPVAAASVPAP-PASIMERI 866
Query: 249 RAGEGGGAASRRSLPAPLLK 268
A +G + L A LK
Sbjct: 867 SASKGLISPMMARLAAAALK 886
>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
[Homo sapiens]
Length = 825
Score = 33.5 bits (75), Expect = 0.21
Identities = 34/121 (28%), Positives = 42/121 (34%), Gaps = 3/121 (2%)
Query: 145 GHFGALDLALQLGHLLLKQDVAGGDAPVVEGEDD-DHHQQHHQHERGQAASPPVGPETHH 203
G GA D +D G D EGED+ ++ E G P P T
Sbjct: 111 GAAGAADSGPMEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQ 170
Query: 204 GAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGRLRAGEGGGAASRRSLP 263
GA+ + AG+S G AP A G G + EGGG R P
Sbjct: 171 QQPQQ-QRGAAKEA-AGKSSGPTSLFAVTVAPPGARQGQQQAGGKKKAEGGGGGGRPGAP 228
Query: 264 A 264
A
Sbjct: 229 A 229
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 33.5 bits (75), Expect = 0.21
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 195 PPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGRLRAGEGG 254
PP G + G+ G GA P G G G D A PA GGGG G GG
Sbjct: 170 PPPGEQPPSGSGHGRPPGARPPHRGGGRGGGG----GDAAAPPARGGGG--GGKARPPGG 223
Query: 255 GAA 257
GAA
Sbjct: 224 GAA 226
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 33.5 bits (75), Expect = 0.21
Identities = 40/120 (33%), Positives = 44/120 (36%), Gaps = 20/120 (16%)
Query: 143 PAGHFGALDLALQLGHLLLKQDVAGGDAPVVEGEDDD-------HHQQHHQHERGQAASP 195
P G G D A G L+ AGG G DD H + HQ A+
Sbjct: 75 PTGGGGGGDWA---GGPHLEHGKAGGGGT---GRADDGGGGGGFHARLVHQGAAHAGAAW 128
Query: 196 PVGPETHHGAKSGCTLGASPQTPAGRSPG-LGWSCPADTAPGPAEGGGGLTGRLRAGEGG 254
G HH G + SP G P LG A P GGGGL G L AG GG
Sbjct: 129 AQGSTAHH---LGPAMSPSPGASGGHQPQPLGLYAQAAY---PGGGGGGLAGMLAAGGGG 182
Score = 30.4 bits (67), Expect = 1.8
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 202 HH---GAKSGCTLG-ASPQ-TPAGRSPGLGWSCPADTAPGPAEGGGGLTGRLRAGEGGGA 256
HH GA +G +G A PQ P G G W+ G A GGG TGR G GGG
Sbjct: 54 HHEWLGAGAGHPVGLAHPQWLPTGGGGGGDWAGGPHLEHGKAGGGG--TGRADDGGGGGG 111
Query: 257 ASRR 260
R
Sbjct: 112 FHAR 115
>gi|239749439 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 33.1 bits (74), Expect = 0.27
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 204 GAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGRLRAGEGGGAASRRSLP 263
G +G L AS + PA + + S P T PGPA GGG R+G G AA+ +
Sbjct: 4 GRPAGSPLSASAE-PAPLAAAIRDSRPGRTGPGPAGPGGG----SRSGSGRPAAANAARE 58
Query: 264 APLLKSGQNAFRRL 277
+++ ++AF L
Sbjct: 59 RSRVQTLRHAFLEL 72
>gi|239743573 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 33.1 bits (74), Expect = 0.27
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 204 GAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGRLRAGEGGGAASRRSLP 263
G +G L AS + PA + + S P T PGPA GGG R+G G AA+ +
Sbjct: 4 GRPAGSPLSASAE-PAPLAAAIRDSRPGRTGPGPAGPGGG----SRSGSGRPAAANAARE 58
Query: 264 APLLKSGQNAFRRL 277
+++ ++AF L
Sbjct: 59 RSRVQTLRHAFLEL 72
>gi|123173757 RAVER1 [Homo sapiens]
Length = 756
Score = 33.1 bits (74), Expect = 0.27
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 188 ERGQAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGR 247
++G +PP P + A S L + QT + PG+ P A+ L G
Sbjct: 375 KQGLLGAPPAMPLLNGPALSTALLQLALQTQGQKKPGILGDSPLGALQPGAQPANPLLGE 434
Query: 248 LRAGEG--GGAASRRSLPAPLLKS 269
L AG G RR P PLL S
Sbjct: 435 LPAGGGLPPELPPRRGKPPPLLPS 458
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 33.1 bits (74), Expect = 0.27
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 191 QAASPPVGPETHHGAKSGCTLGASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGRLRA 250
QA S P G H K SP + A +P + A G GGGG
Sbjct: 10 QAFSMPHGGSLHVEPKYSALHSTSPGSSAPIAPSASSPSSSSNAGGGGGGGGG------G 63
Query: 251 GEGGGAASRRSLPAPLLKSGQNAFRR 276
G GGG +S S G A RR
Sbjct: 64 GGGGGRSSSSSSSGSSGGGGSEAMRR 89
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 33.1 bits (74), Expect = 0.27
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 18/119 (15%)
Query: 173 VEGEDDDHHQQHHQHERGQAASPPVGPETHHGAKSGCTLG-----ASPQTPAGRSPGLGW 227
+E +D+ + +HE G P P A C +G + + G+ P G
Sbjct: 344 IENSEDEEGKSGRKHEDGGGDKKPAEPAGAARAAQPCVMGNIQKKLTGKAEGGKRPARGA 403
Query: 228 SCPADT------------APGPAEGGGGLTGRLRAGEGG-GAASRRSLPAPLLKSGQNA 273
T A A GGG TG G+G A +S L +SGQ A
Sbjct: 404 PQRGQTPEAGADKRSPRRASAAAAAGGGATGHPGGGQGAENPAGLKSQGNELFRSGQFA 462
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 33.1 bits (74), Expect = 0.27
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 18/119 (15%)
Query: 173 VEGEDDDHHQQHHQHERGQAASPPVGPETHHGAKSGCTLG-----ASPQTPAGRSPGLGW 227
+E +D+ + +HE G P P A C +G + + G+ P G
Sbjct: 344 IENSEDEEGKSGRKHEDGGGDKKPAEPAGAARAAQPCVMGNIQKKLTGKAEGGKRPARGA 403
Query: 228 SCPADT------------APGPAEGGGGLTGRLRAGEGG-GAASRRSLPAPLLKSGQNA 273
T A A GGG TG G+G A +S L +SGQ A
Sbjct: 404 PQRGQTPEAGADKRSPRRASAAAAAGGGATGHPGGGQGAENPAGLKSQGNELFRSGQFA 462
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,709,565
Number of Sequences: 37866
Number of extensions: 706308
Number of successful extensions: 4297
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 3929
Number of HSP's gapped (non-prelim): 447
length of query: 277
length of database: 18,247,518
effective HSP length: 101
effective length of query: 176
effective length of database: 14,423,052
effective search space: 2538457152
effective search space used: 2538457152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.