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Search of human proteins with 239744958
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744958 PREDICTED: hypothetical protein XP_002343344 [Homo
sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744958 PREDICTED: hypothetical protein XP_002343344 [Homo ... 198 7e-52
gi|169207282 PREDICTED: hypothetical protein [Homo sapiens] 196 3e-51
gi|169207648 PREDICTED: hypothetical protein [Homo sapiens] 196 3e-51
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 35 0.010
gi|95007022 tescalcin [Homo sapiens] 35 0.010
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 35 0.013
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 34 0.022
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 34 0.022
gi|32490559 low density lipoprotein receptor-related protein 10 ... 34 0.022
gi|7019371 TCF3 (E2A) fusion partner [Homo sapiens] 34 0.029
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 33 0.049
gi|52351208 solute carrier family 30 (zinc transporter), member ... 33 0.049
gi|27734829 hypothetical protein LOC256329 [Homo sapiens] 33 0.049
gi|38788260 bromodomain PHD finger transcription factor isoform ... 33 0.064
gi|38788274 bromodomain PHD finger transcription factor isoform ... 33 0.064
gi|169234647 smoothelin-like 2 isoform 1 [Homo sapiens] 33 0.064
gi|116235480 leucine zipper transcription regulator 2 [Homo sapi... 32 0.084
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 32 0.084
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 32 0.084
gi|119395716 forkhead box C1 [Homo sapiens] 32 0.11
gi|239752750 PREDICTED: similar to protein phosphatase 2, cataly... 32 0.14
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 32 0.14
gi|33188461 GATA binding protein 4 [Homo sapiens] 31 0.19
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|239748594 PREDICTED: hypothetical protein XP_002346735 [Homo ... 31 0.19
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|31581524 cordon-bleu homolog [Homo sapiens] 31 0.19
>gi|239744958 PREDICTED: hypothetical protein XP_002343344 [Homo
sapiens]
Length = 95
Score = 198 bits (504), Expect = 7e-52
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MGCGRSHLRKVRNLLRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRR 60
MGCGRSHLRKVRNLLRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRR
Sbjct: 1 MGCGRSHLRKVRNLLRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRR 60
Query: 61 APRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP 95
APRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP
Sbjct: 61 APRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP 95
>gi|169207282 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 196 bits (499), Expect = 3e-51
Identities = 94/95 (98%), Positives = 95/95 (100%)
Query: 1 MGCGRSHLRKVRNLLRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRR 60
MGCGRSHLRKVR+LLRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRR
Sbjct: 1 MGCGRSHLRKVRDLLRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRR 60
Query: 61 APRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP 95
APRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP
Sbjct: 61 APRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP 95
>gi|169207648 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 196 bits (499), Expect = 3e-51
Identities = 94/95 (98%), Positives = 95/95 (100%)
Query: 1 MGCGRSHLRKVRNLLRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRR 60
MGCGRSHLRKVR+LLRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRR
Sbjct: 1 MGCGRSHLRKVRDLLRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRR 60
Query: 61 APRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP 95
APRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP
Sbjct: 61 APRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP 95
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 35.4 bits (80), Expect = 0.010
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 21 PGAATGWKARPRLLFMARRLSLRRGALP-------LAGPASRHGPRRAPRPPAPGVPSRG 73
P GW+A + + R +LRR A L G G RRA +P G RG
Sbjct: 520 PQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAVGARGRRRAHKPVVVGERLRG 579
Query: 74 RGSGDARRGSQAQGG 88
RG AR G+ +GG
Sbjct: 580 RG---ARVGTWRRGG 591
>gi|95007022 tescalcin [Homo sapiens]
Length = 267
Score = 35.4 bits (80), Expect = 0.010
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 55 RHGPRRAPRPPA-PGVPSRGRGSGDARR-GSQAQGGKEKGAGP 95
R GP R PR A GVP+RGR G +RR ++A G E+ A P
Sbjct: 4 RSGPTRNPRLRAFAGVPTRGRTRGQSRRCAAEASAGPERDARP 46
>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 35.0 bits (79), Expect = 0.013
Identities = 35/105 (33%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 2 GCGRSHLRKVRNLLRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRRA 61
G G + L+R GAA +ARP AR L L GA AG R R
Sbjct: 149 GLGGPRVAAASELVRRGLASGAA---RARPASPAPARLLPLAVGASAAAGDTRRTEARAE 205
Query: 62 PRP----------PAPG-VPSRGRGSGDARRGSQAQG-GKEKGAG 94
P P P PG +P+R G G R G G G G G
Sbjct: 206 PSPSRRRRRRCCAPLPGSLPARRPGCGGRRAGGARAGQGAHTGVG 250
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 35.0 bits (79), Expect = 0.013
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 20 EPGAATGWKARPRLLFMARRLSLRRGALPLAGPASR--------HGPRRAPRPPAPGVPS 71
EPGAA G P AR + + + + P +G A R P+R PRPP P P
Sbjct: 888 EPGAALGPLPYPERQKRARSMIILQDSAPESGDAPRPPPAATPPERPKRRPRPPGPDSPY 947
Query: 72 RGRGSGDA 79
G+ A
Sbjct: 948 ANLGAFSA 955
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 48 PLAGPASRHGPRR-APRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP 95
P GP GPR P PP G G GD RG +GG G GP
Sbjct: 654 PHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGP 702
Score = 28.1 bits (61), Expect = 1.6
Identities = 29/92 (31%), Positives = 31/92 (33%), Gaps = 22/92 (23%)
Query: 18 HSEPGAATGWKARPRLLFMARRLSLRRGALPL---AGPASRHGPRRAPRPPAPGVPSRGR 74
H PG G PRLL RG P G R GP R P PG RGR
Sbjct: 655 HGGPGGPVG----PRLLGPPPP---PRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGR 707
Query: 75 GSGDAR------------RGSQAQGGKEKGAG 94
G RG ++ GG G G
Sbjct: 708 GGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG 739
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 34.3 bits (77), Expect = 0.022
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 29 ARPRLLFMARRLSLRRGALPLAGPASRHGPRRAPRPPAPGVPSRGRG---SGDARRGSQA 85
ARP +RR RR P P GP R P PP P P RG G +G A G+
Sbjct: 27 ARPGAKAPSRR---RRDCRPPPPPPPPAGPSRGPLPPPP--PPRGLGPPVAGGAAAGAGM 81
Query: 86 QGGKEKGAGP 95
GG G GP
Sbjct: 82 PGG---GGGP 88
>gi|32490559 low density lipoprotein receptor-related protein 10
precursor [Homo sapiens]
Length = 713
Score = 34.3 bits (77), Expect = 0.022
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 7 HLRKVRNLLRSHSEPGAATGWKARPRLLFMAR--RLSLRRGALPLAG-PASRHGPRRAPR 63
+LR + +LR PG G + R R M R R R G LP PA R
Sbjct: 524 NLRSLLQILRQDMTPGGGPGARRRQRGRLMRRLVRRLRRWGLLPRTNTPARASEARSQVT 583
Query: 64 PPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP 95
P A + + G+G AR G A GG++ P
Sbjct: 584 PSAAPLEALDGGTGPAREGG-AVGGQDGEQAP 614
>gi|7019371 TCF3 (E2A) fusion partner [Homo sapiens]
Length = 253
Score = 33.9 bits (76), Expect = 0.029
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 58 PRRAPRPPAPGVPSRGRGSGDARRGSQAQGGKEKG 92
PRR P PP PG P+ G G +R + G+ G
Sbjct: 169 PRRTPAPPEPGSPAPGEGPSGRKRRRVPRDGRRAG 203
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 48 PLAGPASRHGPRRAPRPPAPGVPSR------GRGSGDARRGSQAQG 87
P A P +R PRR PRPPA G P+R G GDA R + G
Sbjct: 443 PDAAPEARPRPRRRPRPPA-GSPARSPAHSLGLNFGDAARQTPRHG 487
>gi|52351208 solute carrier family 30 (zinc transporter), member 10
[Homo sapiens]
Length = 485
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 30 RPRLLFMARRLSLRRGALPLA--GPASRHGPRRAPRPPAPGVPSRGRGSGDARRGSQAQG 87
R R + +R L G +P A GP PRRA P AP G S RG+ +
Sbjct: 146 RGRSRRLQQRQQLAEGCVPGAFGGPQGAEDPRRAADPTAP-----GSDSAVTLRGTSVER 200
Query: 88 GKEKGA 93
+EKGA
Sbjct: 201 KREKGA 206
>gi|27734829 hypothetical protein LOC256329 [Homo sapiens]
Length = 634
Score = 33.1 bits (74), Expect = 0.049
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 2 GCGRSHLRKVRNLLRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRRA 61
GC L +L H P T PR+ LS+ R LP AGP + R+
Sbjct: 448 GCATLLLSPKGEVLSEHRIPRRET---PAPRVFADGTDLSIDRFPLPEAGPGA--DTRKP 502
Query: 62 PRPPAPGVPSRGRGSGDARRGSQAQG 87
PRPP P R R +RR +G
Sbjct: 503 PRPPRPLRKGRVREPRVSRRRPGTRG 528
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 32.7 bits (73), Expect = 0.064
Identities = 28/80 (35%), Positives = 31/80 (38%), Gaps = 15/80 (18%)
Query: 15 LRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRRAPRPPAPGVPSR-- 72
LRS + W A + RLS RG G +SR R P PP P PS
Sbjct: 39 LRSRHRGSSRGRWAAAQAEVAPKTRLSSPRG-----GSSSR----RKPPPPPPAPPSTSA 89
Query: 73 ----GRGSGDARRGSQAQGG 88
GRG G R G GG
Sbjct: 90 PGRGGRGGGGGRTGGGGGGG 109
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 32.7 bits (73), Expect = 0.064
Identities = 28/80 (35%), Positives = 31/80 (38%), Gaps = 15/80 (18%)
Query: 15 LRSHSEPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRRAPRPPAPGVPSR-- 72
LRS + W A + RLS RG G +SR R P PP P PS
Sbjct: 39 LRSRHRGSSRGRWAAAQAEVAPKTRLSSPRG-----GSSSR----RKPPPPPPAPPSTSA 89
Query: 73 ----GRGSGDARRGSQAQGG 88
GRG G R G GG
Sbjct: 90 PGRGGRGGGGGRTGGGGGGG 109
>gi|169234647 smoothelin-like 2 isoform 1 [Homo sapiens]
Length = 461
Score = 32.7 bits (73), Expect = 0.064
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 32 RLLFMARRLSLRRGALPLAGPASRHGPRRAPRPPAPGVPSRGRGSGDARRGSQA 85
RL L L G P+ G P PPAPGVP R G AR S A
Sbjct: 76 RLTRQVEALGLASGMSPVPGTPGTPSP-----PPAPGVPDRAPRLGSARFASHA 124
>gi|116235480 leucine zipper transcription regulator 2 [Homo
sapiens]
Length = 1060
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 62 PRPPAPGVP-----SRGRGSGDARRGSQAQGGKEKGAG 94
P P +P +P SRGRG G+ RGS + GG GAG
Sbjct: 960 PSPESPPLPDVSAFSRGRGGGEG-RGSASSGGAAAGAG 996
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 32.3 bits (72), Expect = 0.084
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 21 PGAATGWKARPRLLFMARRLSLRRGALP-------LAGPASRHGPRRAPRPPAPGVPSRG 73
P GW+A + + R +LRR A L G G RRA +P G RG
Sbjct: 566 PQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAVGARGRRRAHKPVVVGERLRG 625
Query: 74 RGS 76
RG+
Sbjct: 626 RGA 628
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 32.3 bits (72), Expect = 0.084
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 21 PGAATGWKARPRLLFMARRLSLRRGALP-------LAGPASRHGPRRAPRPPAPGVPSRG 73
P GW+A + + R +LRR A L G G RRA +P G RG
Sbjct: 520 PQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAVGARGRRRAHKPVVVGERLRG 579
Query: 74 RGS 76
RG+
Sbjct: 580 RGA 582
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 45 GALPLAGPASRHGPRRAPRPPAPGVPSRGRGSG-------DARRGSQAQGGKEKGAG 94
G+LP A P S G AP PPAP P G + RGS E +G
Sbjct: 275 GSLPSARPLSLDGADSAPPPPAPSAPPPHHSQGFSVDNIMTSLRGSPQSAAAELSSG 331
>gi|239752750 PREDICTED: similar to protein phosphatase 2,
catalytic subunit, alpha [Homo sapiens]
Length = 384
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/33 (57%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 50 AGPASRHGPRRA---PRPPAPGVPSRGRGSGDA 79
AGPA+R PR A PRP APG SR R G A
Sbjct: 64 AGPATRAEPRTASEQPRPHAPGSLSRRRALGCA 96
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 57 GPRRAPRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP 95
G ++ PP PG P GD R SQ+ GK +G P
Sbjct: 186 GGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPP 224
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 57 GPRRAPRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP 95
G R PP PG P GD R ++ GK +G P
Sbjct: 125 GGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP 163
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 57 GPRRAPRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP 95
G + PP PG P GD R ++ GK +G P
Sbjct: 64 GGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP 102
>gi|33188461 GATA binding protein 4 [Homo sapiens]
Length = 442
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 45 GALPLAGP-ASRHGPRRAPRP---PAPGVPS--------RGRGSGDARRGSQ--AQGGKE 90
GA GP A HG A P P P VPS +G G+G A G+ + GG
Sbjct: 16 GAYEAGGPGAFMHGAGAASSPVYVPTPRVPSSVLGLSYLQGGGAGSASGGASGGSSGGAA 75
Query: 91 KGAGP 95
GAGP
Sbjct: 76 SGAGP 80
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 31.2 bits (69), Expect = 0.19
Identities = 26/74 (35%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 20 EPGAATGWKARPRLLFMARRLSLRRGALPLAGPASRHGPRRAPRPPAPGVPSRGRGSGDA 79
EPG A G PRL R + R P G SR RA P PG G A
Sbjct: 222 EPGRAEGASREPRL----RSRAARPPPAPGPGALSRASRSRAAGRPGPGF--HGGEKAAA 275
Query: 80 RRGSQAQGGKEKGA 93
R GG+ GA
Sbjct: 276 PRAPGGGGGRNPGA 289
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 42 LRRGALPLAGPASRHGPRRAPRPPA-----PGVPSRGRGSGDARRGSQAQG 87
LR A L+ A R GP RA PPA PG S R S R GS+A+G
Sbjct: 117 LRCSAAALSA-AQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARG 166
Score = 28.9 bits (63), Expect = 0.93
Identities = 29/102 (28%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 4 GRSHLRKVRNLLRSHSEPGAATGWKARPRLLFMARRLSLRRGALP-----LAGPASRHGP 58
GRS R + H PGA+ R R F + R P GP G
Sbjct: 166 GRSGAECARRVPLHHGPPGASGVGSERDRK-FQLHQTPARGPPFPGISGMTRGPVVLSGV 224
Query: 59 RRAPRPPAPGVPSRGRGSGDARRGSQA-----QGGKEKGAGP 95
R R P PSR G R ++A G+ G GP
Sbjct: 225 NRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGP 266
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 44 RGALPLAGPASRHGPRRAPRPPAPGVPSR 72
R A P A P RR P PPAPG P+R
Sbjct: 308 RPAEPRAPPRPPPAARRPPPPPAPGAPAR 336
>gi|239748594 PREDICTED: hypothetical protein XP_002346735 [Homo
sapiens]
Length = 262
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 13/49 (26%)
Query: 53 ASRHGPRRA--PRPPAPGV-----------PSRGRGSGDARRGSQAQGG 88
A R GP R+ PRP PGV P RG G+ A+ G++ +GG
Sbjct: 3 ARRQGPARSANPRPQFPGVCGREHAATLRAPGRGGGASPAQIGTRGRGG 51
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 42 LRRGALPLAGPASRHGPRRAPRPPA-----PGVPSRGRGSGDARRGSQAQG 87
LR A L+ A R GP RA PPA PG S R S R GS+A+G
Sbjct: 117 LRCSAAALSA-AQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARG 166
Score = 28.9 bits (63), Expect = 0.93
Identities = 29/102 (28%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 4 GRSHLRKVRNLLRSHSEPGAATGWKARPRLLFMARRLSLRRGALP-----LAGPASRHGP 58
GRS R + H PGA+ R R F + R P GP G
Sbjct: 166 GRSGAECARRVPLHHGPPGASGVGSERDRK-FQLHQTPARGPPFPGISGMTRGPVVLSGV 224
Query: 59 RRAPRPPAPGVPSRGRGSGDARRGSQA-----QGGKEKGAGP 95
R R P PSR G R ++A G+ G GP
Sbjct: 225 NRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGP 266
>gi|31581524 cordon-bleu homolog [Homo sapiens]
Length = 1261
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/55 (34%), Positives = 24/55 (43%)
Query: 41 SLRRGALPLAGPASRHGPRRAPRPPAPGVPSRGRGSGDARRGSQAQGGKEKGAGP 95
SL G++ S RRAP PP G P + + S GSQ K+K P
Sbjct: 282 SLSLGSISGVSVKSEMKKRRAPPPPGSGPPVQDKASEKVSLGSQIDLQKKKRRAP 336
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,220,206
Number of Sequences: 37866
Number of extensions: 301611
Number of successful extensions: 4342
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 374
Number of HSP's that attempted gapping in prelim test: 3514
Number of HSP's gapped (non-prelim): 1165
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.