Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239744865
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744865 PREDICTED: hypothetical protein [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169206319 PREDICTED: hypothetical protein [Homo sapiens] 301 1e-82
gi|169206579 PREDICTED: hypothetical protein [Homo sapiens] 301 1e-82
gi|239744865 PREDICTED: hypothetical protein [Homo sapiens] 301 1e-82
gi|156416026 zinc finger protein 219 [Homo sapiens] 35 0.021
gi|156415998 zinc finger protein 219 [Homo sapiens] 35 0.021
gi|156415996 zinc finger protein 219 [Homo sapiens] 35 0.021
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 34 0.047
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 34 0.047
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 33 0.061
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 33 0.079
gi|112421108 capicua homolog [Homo sapiens] 33 0.079
gi|239751142 PREDICTED: hypothetical protein XP_002347724 [Homo ... 33 0.10
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.10
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 32 0.14
gi|169184020 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|169179745 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|169180144 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|4758410 fragile X mental retardation syndrome related protein... 32 0.23
gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo sapi... 31 0.39
gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo sapi... 31 0.39
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 30 0.52
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 30 0.52
gi|145199237 transcription elongation factor B polypeptide 3 bin... 30 0.52
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens] 30 0.67
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 30 0.67
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ... 30 0.67
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 30 0.67
gi|95089461 discs large homolog 5 [Homo sapiens] 30 0.67
gi|21265052 ADAM metallopeptidase with thrombospondin type 1 mot... 30 0.67
gi|110611167 ADAM metallopeptidase with thrombospondin type 1 mo... 30 0.67
>gi|169206319 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 301 bits (771), Expect = 1e-82
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNP 60
MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNP
Sbjct: 1 MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNP 60
Query: 61 RPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARR 120
RPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARR
Sbjct: 61 RPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARR 120
Query: 121 DGQLRHLGRGQYFGASVMSPVT 142
DGQLRHLGRGQYFGASVMSPVT
Sbjct: 121 DGQLRHLGRGQYFGASVMSPVT 142
>gi|169206579 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 301 bits (771), Expect = 1e-82
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNP 60
MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNP
Sbjct: 1 MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNP 60
Query: 61 RPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARR 120
RPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARR
Sbjct: 61 RPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARR 120
Query: 121 DGQLRHLGRGQYFGASVMSPVT 142
DGQLRHLGRGQYFGASVMSPVT
Sbjct: 121 DGQLRHLGRGQYFGASVMSPVT 142
>gi|239744865 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 301 bits (771), Expect = 1e-82
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNP 60
MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNP
Sbjct: 1 MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNP 60
Query: 61 RPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARR 120
RPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARR
Sbjct: 61 RPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARR 120
Query: 121 DGQLRHLGRGQYFGASVMSPVT 142
DGQLRHLGRGQYFGASVMSPVT
Sbjct: 121 DGQLRHLGRGQYFGASVMSPVT 142
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 35.0 bits (79), Expect = 0.021
Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 11 QGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPARRTWTE- 69
Q L+ R HR+ RS PP P P SQ S G +P+PA TW E
Sbjct: 537 QSGSLKYHLQRHHREQRSGAGPGPPPEPPP----PSQRGSAPQSGAKPSPQPA--TWVEG 590
Query: 70 ----RPCSE---PGAGRR----ALVWRLGLPTVQSPEARSSRRDDDGWAGPG 110
RP S PG+ R+ R G P S R G AGPG
Sbjct: 591 ASSPRPPSSGAGPGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGPG 642
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 35.0 bits (79), Expect = 0.021
Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 11 QGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPARRTWTE- 69
Q L+ R HR+ RS PP P P SQ S G +P+PA TW E
Sbjct: 537 QSGSLKYHLQRHHREQRSGAGPGPPPEPPP----PSQRGSAPQSGAKPSPQPA--TWVEG 590
Query: 70 ----RPCSE---PGAGRR----ALVWRLGLPTVQSPEARSSRRDDDGWAGPG 110
RP S PG+ R+ R G P S R G AGPG
Sbjct: 591 ASSPRPPSSGAGPGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGPG 642
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 35.0 bits (79), Expect = 0.021
Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 11 QGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPARRTWTE- 69
Q L+ R HR+ RS PP P P SQ S G +P+PA TW E
Sbjct: 537 QSGSLKYHLQRHHREQRSGAGPGPPPEPPP----PSQRGSAPQSGAKPSPQPA--TWVEG 590
Query: 70 ----RPCSE---PGAGRR----ALVWRLGLPTVQSPEARSSRRDDDGWAGPG 110
RP S PG+ R+ R G P S R G AGPG
Sbjct: 591 ASSPRPPSSGAGPGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGPG 642
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 33.9 bits (76), Expect = 0.047
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 1 MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHA--PPLRPGPLRGQRSQESSLYLCGTDR 58
+RG A PA R+R PR +R+ A PP RP + + +S G +R
Sbjct: 53 LRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAAS----GEER 108
Query: 59 N-PRPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAG 108
+ PR RR P GRR ++ + RS RR D G +G
Sbjct: 109 SQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSG 159
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 33.9 bits (76), Expect = 0.047
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 1 MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHA--PPLRPGPLRGQRSQESSLYLCGTDR 58
+RG A PA R+R PR +R+ A PP RP + + +S G +R
Sbjct: 53 LRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAAS----GEER 108
Query: 59 N-PRPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAG 108
+ PR RR P GRR ++ + RS RR D G +G
Sbjct: 109 SQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSG 159
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 33.5 bits (75), Expect = 0.061
Identities = 27/87 (31%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 58 RNPRPARRTWTERPCSEPGAGRRA----LVWRLGLPTVQSPEARSSRRDDDGWAGPGVGD 113
R P PA R RP RR L W P + RSS G A PGV
Sbjct: 83 RRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVAR 142
Query: 114 SQTPARRDGQLRHLGRGQYFGASVMSP 140
+Q P G+ G G G + P
Sbjct: 143 AQRPGGSGGRSHPGGPGSPRGGGTVGP 169
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 33.1 bits (74), Expect = 0.079
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 1 MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHA--PPLRPGPLRGQRSQESSLYLCGTDR 58
+RG A PA R+R PR +R+ A PP RP + + +S G +R
Sbjct: 53 LRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAAS----GEER 108
Query: 59 N-PRPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAG 108
+ PR RR P GRR ++ + RS RR D G +G
Sbjct: 109 SQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSG 159
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 33.1 bits (74), Expect = 0.079
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 26 GRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPARRTWT----ERPCSEPGAGRRA 81
GR PL PGP+R + ES L T P P TWT P P A R
Sbjct: 1198 GRPGPAPRQPLEPGPVREPTAPESELEGQPTPPAPPPLPETWTPTARSSPPLPPPAEERT 1257
Query: 82 LVWRLGLPTVQSPEARSSR--RDDDGWAGPGVG 112
+ + PE +S+ W PG G
Sbjct: 1258 --------SAKGPETMASKFPSSSSDWRVPGQG 1282
>gi|239751142 PREDICTED: hypothetical protein XP_002347724 [Homo
sapiens]
Length = 364
Score = 32.7 bits (73), Expect = 0.10
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 16 RSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDR----NPRPARRTWTERP 71
R+ S+ +S H PL PGP+R Q Q C DR PR + R W P
Sbjct: 290 RTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGAAGCTADRRGLLGPRGSGRGWVATP 349
Query: 72 CS-EPGAGRRA 81
PG+ R A
Sbjct: 350 GQRHPGSVRAA 360
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.10
Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
Query: 9 PAQGARLRSRGPRSHR-QGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPARRTW 67
PA+ R RSR P R + R+ R RG+ + R+P RR+
Sbjct: 578 PARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSP-VRRRSR 636
Query: 68 TERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARR 120
+ P G R R G ++P R R G S+TPARR
Sbjct: 637 SRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARR 689
Score = 32.0 bits (71), Expect = 0.18
Identities = 35/121 (28%), Positives = 43/121 (35%), Gaps = 20/121 (16%)
Query: 9 PAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPARRTWT 68
PA+ R RSR P R S P+R + S G R+ PARR
Sbjct: 609 PARRGRSRSRTPARRRSRTRS----------PVRRRSRSRSPARRSGRSRSRTPARR--- 655
Query: 69 ERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARRDGQLRHLG 128
G R R G ++P RS R A G S+TP R + R L
Sbjct: 656 -------GRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLV 708
Query: 129 R 129
R
Sbjct: 709 R 709
Score = 27.3 bits (59), Expect = 4.4
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 11 QGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPARRTWTER 70
+ R RSR P R+GRS P R G R + S G R+ PARR +
Sbjct: 643 RSGRSRSRTPA--RRGRS--RSRTPARRGRSRSRTPARRS----GRSRSRTPARRGRSRS 694
Query: 71 PCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARR 120
G R + R G ++P+ RR G + S+T RR
Sbjct: 695 RTPRRGRSRSRSLVRRGRSHSRTPQ----RRGRSGSSSERKNKSRTSQRR 740
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 32.3 bits (72), Expect = 0.14
Identities = 32/105 (30%), Positives = 37/105 (35%), Gaps = 12/105 (11%)
Query: 20 PRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPARRTWTERPCSEPGAGR 79
P H HHAPP +P + G+ +P P R P
Sbjct: 995 PAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPP-------RLALGPQPSL 1047
Query: 80 RALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPARRDGQL 124
R WR G P SP + G AG G G SQ PA R QL
Sbjct: 1048 RG--WRGGGP---SPTPGAPSPSHHGSAGGGGGSSQGPALRYFQL 1087
>gi|169184020 PREDICTED: hypothetical protein [Homo sapiens]
Length = 132
Score = 32.0 bits (71), Expect = 0.18
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 3 GFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPPL---RPGPLRGQRSQESSLYLCGTDRN 59
G G GF R+ SRG R R+ PPL RP L+ S CG+ +
Sbjct: 45 GRGVGFK----RIISRGSRGIREAELGAQTDPPLSWSRPTALQSPPYSSSPQVCCGSTKP 100
Query: 60 PRPARRTWTERP 71
RP R + P
Sbjct: 101 GRPTRSCIQQEP 112
>gi|169179745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 132
Score = 32.0 bits (71), Expect = 0.18
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 3 GFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPPL---RPGPLRGQRSQESSLYLCGTDRN 59
G G GF R+ SRG R R+ PPL RP L+ S CG+ +
Sbjct: 45 GRGVGFK----RIISRGSRGIREAELGAQTDPPLSWSRPTALQSPPYSSSPQVCCGSTKP 100
Query: 60 PRPARRTWTERP 71
RP R + P
Sbjct: 101 GRPTRSCIQQEP 112
>gi|169180144 PREDICTED: hypothetical protein [Homo sapiens]
Length = 132
Score = 32.0 bits (71), Expect = 0.18
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 3 GFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPPL---RPGPLRGQRSQESSLYLCGTDRN 59
G G GF R+ SRG R R+ PPL RP L+ S CG+ +
Sbjct: 45 GRGVGFK----RIISRGSRGIREAELGAQTDPPLSWSRPTALQSPPYSSSPQVCCGSTKP 100
Query: 60 PRPARRTWTERP 71
RP R + P
Sbjct: 101 GRPTRSCIQQEP 112
>gi|4758410 fragile X mental retardation syndrome related protein 2
[Homo sapiens]
Length = 673
Score = 31.6 bits (70), Expect = 0.23
Identities = 37/136 (27%), Positives = 45/136 (33%), Gaps = 10/136 (7%)
Query: 17 SRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPARRTWTERP--CSE 74
+RG S R+ PP P P S S L D NP T P SE
Sbjct: 475 TRGEESRRRPTGGRGRGPPPAPRPTSRYNSSSISSVLKDPDSNPYSLLDTSEPEPPVDSE 534
Query: 75 PGAGRRALVWRLGLPTVQSPEARS-----SRRDDDGWAGPGVGDSQTPARRDGQLRHLGR 129
PG A R ++ E R+ D G+ D P RR+ R R
Sbjct: 535 PGEPPPASARRRRSRRRRTDEDRTVMDGGLESDGPNMTENGLEDESRPQRRNRSRRRRNR 594
Query: 130 GQYFGASV---MSPVT 142
G S+ PVT
Sbjct: 595 GNRTDGSISGDRQPVT 610
>gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 30.8 bits (68), Expect = 0.39
Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 9 PAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPARRTWT 68
PA ++ R R R +G A P P R RSQ R R + +W
Sbjct: 399 PALRSQSRDRLDRGRPRGAPGGRGAQLSVPSPARRARSQSREEQAVLLVRRDRDGQHSWV 458
Query: 69 ERPCSEPGAGRRALVWRLGLPTVQSPEARS 98
R G+GR T Q+P ARS
Sbjct: 459 PRGRGSGGSGR---------STPQTPRARS 479
>gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 30.8 bits (68), Expect = 0.39
Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 9 PAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPARRTWT 68
PA ++ R R R +G A P P R RSQ R R + +W
Sbjct: 399 PALRSQSRDRLDRGRPRGAPGGRGAQLSVPSPARRARSQSREEQAVLLVRRDRDGQHSWV 458
Query: 69 ERPCSEPGAGRRALVWRLGLPTVQSPEARS 98
R G+GR T Q+P ARS
Sbjct: 459 PRGRGSGGSGR---------STPQTPRARS 479
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 30.4 bits (67), Expect = 0.52
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 60 PRPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPAR 119
P P ++T ++P SEP A + P + P +R D + GPG PA
Sbjct: 169 PMPIKKTKPQQPVSEPAAPEQP------APEPKHPARAPARGDSEDRRGPGQKTGPDPAS 222
Query: 120 RDGQ 123
G+
Sbjct: 223 APGR 226
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 30.4 bits (67), Expect = 0.52
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 60 PRPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTPAR 119
P P ++T ++P SEP A + P + P +R D + GPG PA
Sbjct: 165 PMPIKKTKPQQPVSEPAAPEQP------APEPKHPARAPARGDSEDRRGPGQKTGPDPAS 218
Query: 120 RDGQ 123
G+
Sbjct: 219 APGR 222
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 30.4 bits (67), Expect = 0.52
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 5 GAGFPAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPAR 64
G G P + R +GP++ R + RP + + S + + G R RPAR
Sbjct: 403 GRGRPVEKPRADKKGPQASSPRRKAE------RPEGTKKKPSSATPVATSGKGRPDRPAR 456
Query: 65 RTWTERPCSEPGAGR 79
R S P AGR
Sbjct: 457 RPSPTSGDSRPAAGR 471
>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 30.0 bits (66), Expect = 0.67
Identities = 46/172 (26%), Positives = 57/172 (33%), Gaps = 40/172 (23%)
Query: 1 MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPP---------------LRPGPLR--- 42
+RG PA+G +R G R R+ HA P L PGP +
Sbjct: 48 VRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLR 107
Query: 43 -----GQRSQESSLYLCGTDRNPRPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEAR 97
GQ + P R E P S GA +R WR R
Sbjct: 108 ISVTLGQAPRAGPSAASSAAAGKTPPSRVPAE-PSSRRGASKRRESWR-----TDGERLR 161
Query: 98 SSRRDDDGWAGPGVG-DSQTPARRDGQL------RHLGRGQYFGASVMSPVT 142
S R G AG G D+ RR+G RH R G SV S ++
Sbjct: 162 SGR----GCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLS 209
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 30.0 bits (66), Expect = 0.67
Identities = 46/172 (26%), Positives = 57/172 (33%), Gaps = 40/172 (23%)
Query: 1 MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPP---------------LRPGPLR--- 42
+RG PA+G +R G R R+ HA P L PGP +
Sbjct: 48 VRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLR 107
Query: 43 -----GQRSQESSLYLCGTDRNPRPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEAR 97
GQ + P R E P S GA +R WR R
Sbjct: 108 ISVTLGQAPRAGPSAASSAAAGKTPPSRVPAE-PSSRRGASKRRESWR-----TDGERLR 161
Query: 98 SSRRDDDGWAGPGVG-DSQTPARRDGQL------RHLGRGQYFGASVMSPVT 142
S R G AG G D+ RR+G RH R G SV S ++
Sbjct: 162 SGR----GCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLS 209
>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
sapiens]
Length = 449
Score = 30.0 bits (66), Expect = 0.67
Identities = 46/172 (26%), Positives = 57/172 (33%), Gaps = 40/172 (23%)
Query: 1 MRGFGAGFPAQGARLRSRGPRSHRQGRSSVHHAPP---------------LRPGPLR--- 42
+RG PA+G +R G R R+ HA P L PGP +
Sbjct: 48 VRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLR 107
Query: 43 -----GQRSQESSLYLCGTDRNPRPARRTWTERPCSEPGAGRRALVWRLGLPTVQSPEAR 97
GQ + P R E P S GA +R WR R
Sbjct: 108 ISVTLGQAPRAGPSAASSAAAGKTPPSRVPAE-PSSRRGASKRRESWR-----TDGERLR 161
Query: 98 SSRRDDDGWAGPGVG-DSQTPARRDGQL------RHLGRGQYFGASVMSPVT 142
S R G AG G D+ RR+G RH R G SV S ++
Sbjct: 162 SGR----GCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLS 209
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 30.0 bits (66), Expect = 0.67
Identities = 36/115 (31%), Positives = 43/115 (37%), Gaps = 18/115 (15%)
Query: 5 GAGFPAQGARLRSRGPRSHRQGRSSVHHAPPLRPGPLRGQRSQESSLYLCGTDRNPRPAR 64
G G A A + R P S Q R + AP L P ++ + R P A
Sbjct: 89 GPGVSAVSAGGQQRAPES--QERPAEESAPALMPSSAPRGPTEPAF-------RRPSSAD 139
Query: 65 RTWTERPCSEPGAGR--RALVWRLGLPTVQSPEARSSRRDDDGWAGPGVGDSQTP 117
R P S PGAGR RA+ G S EA R DG GP + P
Sbjct: 140 RPLAPGPSSSPGAGRAPRAMASPSG-----SSEATGKPRGRDG--GPRREEDDVP 187
>gi|95089461 discs large homolog 5 [Homo sapiens]
Length = 1919
Score = 30.0 bits (66), Expect = 0.67
Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 26 GRSSVHHAPPLRPG-PLRGQ--RSQESSLYLCGTDRNPRPARRTWTERPCSEPGAGRRA 81
G SS H PPL P P G RS S + RNP R+ PCS P A R A
Sbjct: 1158 GHSSRHSNPPLYPSRPSVGTVPRSLTPSTTVSSILRNPIYTVRSHRVGPCSSPPAARDA 1216
>gi|21265052 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 2 preproprotein [Homo sapiens]
Length = 1223
Score = 30.0 bits (66), Expect = 0.67
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 52 YLCGTDRNPRPARRTWTERPCSEP 75
+LC + P+P RR + PCS+P
Sbjct: 886 HLCDHKKRPKPIRRRCNQHPCSQP 909
>gi|110611167 ADAM metallopeptidase with thrombospondin type 1
motif, 14 isoform 1 preproprotein [Homo sapiens]
Length = 1226
Score = 30.0 bits (66), Expect = 0.67
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 52 YLCGTDRNPRPARRTWTERPCSEP 75
+LC + P+P RR + PCS+P
Sbjct: 889 HLCDHKKRPKPIRRRCNQHPCSQP 912
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,432,213
Number of Sequences: 37866
Number of extensions: 424350
Number of successful extensions: 1610
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 1517
Number of HSP's gapped (non-prelim): 223
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.