Guide to the Human Genome
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Name: LOC100288312 Sequence: fasta or formatted (761aa) NCBI GI: 239744762
Description:

PREDICTED: hypothetical protein XP_002343263

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         32           2
 C cysteine            1.6         12           1
 D aspartate           8.5         65           1
 E glutamate           4.6         35           2
 F phenylalanine       5.1         39           1
 G glycine            10.2         78           3
 H histidine           4.3         33           1
 I isoleucine          2.6         20           1
 K lysine              1.8         14           1
 L leucine            17.6        134           2
 M methionine          0.4          3           1
 N asparagine          1.2          9           1
 P proline             5.0         38           2
 Q glutamine           6.6         50           1
 R arginine            6.7         51           5
 S serine              5.5         42           2
 T threonine           5.3         40           2
 V valine              7.6         58           3
 W tryptophan          0.5          4           1
 Y tyrosine            0.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343263 
LOC100294439          0.729   PREDICTED: similar to Os05g0242100 
LOC100293615          0.703   PREDICTED: similar to Os05g0242100 
LOC100133337          0.180   PREDICTED: similar to Os05g0242100 isoform 2 
LOC100133337          0.180   PREDICTED: similar to Os05g0242100 
LOC100133337          0.180   PREDICTED: similar to Os05g0242100 
LOC100133337          0.180   PREDICTED: hypothetical protein isoform 2 
LOC100133337          0.180   PREDICTED: hypothetical protein 
LOC100133337          0.180   PREDICTED: hypothetical protein 
LOC100133337          0.180   PREDICTED: similar to Os05g0242100 isoform 2 
LOC100133337          0.180   PREDICTED: similar to Os05g0242100 
LOC100133337          0.180   PREDICTED: similar to Os05g0242100 
RBM15B                0.008   RNA binding motif protein 15B 
THOC4                 0.008   THO complex 4 
KCNAB3                0.007   potassium voltage-gated channel, shaker-related subf...
ARID1B                0.007   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.007   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.007   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC339192             0.006   PREDICTED: hypothetical protein 
LOC339192             0.006   PREDICTED: hypothetical protein 
LOC339192             0.006   PREDICTED: hypothetical protein 
FGF2                  0.005   fibroblast growth factor 2 
XYLT1                 0.005   xylosyltransferase I 
BAT2                  0.005   HLA-B associated transcript-2 
LOC100292796          0.005   PREDICTED: hypothetical protein 
LOC100294390          0.005   PREDICTED: similar to hCG2041351 
LOC100287763          0.005   PREDICTED: hypothetical protein 
LOC100287763          0.005   PREDICTED: hypothetical protein XP_002342429 
COL9A1                0.005   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.005   alpha 1 type IX collagen isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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