Guide to the Human Genome
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Name: LOC100133337 Sequence: fasta or formatted (299aa) NCBI GI: 239745727
Description:

PREDICTED: similar to Os05g0242100 isoform 2

Not currently referenced in the text

Other entries for this name:
alt mRNA {299aa} PREDICTED: similar to Os05g0242100
alt mRNA {299aa} PREDICTED: similar to Os05g0242100
alt mRNA {299aa} PREDICTED: hypothetical protein
alt mRNA {299aa} PREDICTED: hypothetical protein
alt mRNA {299aa} PREDICTED: hypothetical protein isoform 2
alt mRNA {299aa} PREDICTED: similar to Os05g0242100
alt mRNA {299aa} PREDICTED: similar to Os05g0242100
alt mRNA {299aa} PREDICTED: similar to Os05g0242100 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         22           2
 C cysteine            1.3          4           1
 D aspartate           8.4         25           1
 E glutamate           3.0          9           2
 F phenylalanine       5.4         16           2
 G glycine            10.4         31           2
 H histidine           5.7         17           1
 I isoleucine          3.7         11           1
 K lysine              4.0         12           1
 L leucine            17.7         53           3
 M methionine          1.0          3           1
 N asparagine          1.0          3           1
 P proline             3.7         11           1
 Q glutamine           7.4         22           1
 R arginine            3.7         11           1
 S serine              3.0          9           1
 T threonine           6.4         19           2
 V valine              6.7         20           3
 W tryptophan          0.0          0           0
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Os05g0242100 isoform 2 
LOC100133337          1.000   PREDICTED: similar to Os05g0242100 isoform 2 
LOC100133337          1.000   PREDICTED: similar to Os05g0242100 
LOC100133337          1.000   PREDICTED: similar to Os05g0242100 
LOC100133337          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100133337          1.000   PREDICTED: hypothetical protein 
LOC100133337          1.000   PREDICTED: hypothetical protein 
LOC100133337          1.000   PREDICTED: similar to Os05g0242100 
LOC100133337          1.000   PREDICTED: similar to Os05g0242100 
LOC100294439          0.485   PREDICTED: similar to Os05g0242100 
LOC100293615          0.475   PREDICTED: similar to Os05g0242100 
LOC100288312          0.471   PREDICTED: hypothetical protein XP_002343263 
LOC100128598          0.007   PREDICTED: hypothetical protein 
LOC100293567          0.005   PREDICTED: hypothetical protein 
KLHDC10               0.005   kelch domain containing 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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