Guide to the Human Genome
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Search of human proteins with 239744671

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744671 PREDICTED: hypothetical protein XP_002343233 [Homo
sapiens]
         (121 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755851 PREDICTED: hypothetical protein [Homo sapiens]           243   3e-65
gi|239750367 PREDICTED: hypothetical protein XP_002347407 [Homo ...   243   3e-65
gi|239744671 PREDICTED: hypothetical protein XP_002343233 [Homo ...   243   3e-65
gi|239754487 PREDICTED: hypothetical protein [Homo sapiens]            36   0.008
gi|239749042 PREDICTED: hypothetical protein [Homo sapiens]            36   0.008
gi|239743067 PREDICTED: hypothetical protein [Homo sapiens]            36   0.008
gi|239508713 PREDICTED: hypothetical protein [Homo sapiens]            36   0.008
gi|188497758 ubiquitin associated protein 2-like isoform a [Homo...    32   0.087
gi|188497756 ubiquitin associated protein 2-like isoform b [Homo...    32   0.087
gi|21040355 hemochromatosis protein isoform 10 precursor [Homo s...    32   0.11 
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom...    32   0.11 
gi|13129006 nucleolar protein GU2 [Homo sapiens]                       32   0.11 
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]            31   0.25 
gi|169218106 PREDICTED: hypothetical protein, partial [Homo sapi...    31   0.25 
gi|218749848 family with sequence similarity 38, member A [Homo ...    31   0.25 
gi|81295809 pericentrin [Homo sapiens]                                 30   0.33 
gi|5031759 homeobox A11 [Homo sapiens]                                 30   0.43 
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s...    30   0.43 
gi|169171337 PREDICTED: similar to Six transmembrane epithelial ...    30   0.43 
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]            30   0.43 
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ...    30   0.43 
gi|169170942 PREDICTED: hypothetical protein LOC256227 [Homo sap...    30   0.43 
gi|82659105 protein tyrosine phosphatase-like, member A [Homo sa...    30   0.43 
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]            29   0.74 
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ...    29   0.74 
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ...    29   0.74 
gi|31543392 peroxisome proliferator-activated receptor gamma, co...    29   0.74 
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        29   0.74 
gi|6005920 thyrotropin-releasing hormone [Homo sapiens]                29   0.97 
gi|239755629 PREDICTED: hypothetical protein [Homo sapiens]            29   0.97 

>gi|239755851 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 121

 Score =  243 bits (619), Expect = 3e-65
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR 60
           MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR
Sbjct: 1   MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR 60

Query: 61  RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
           RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG
Sbjct: 61  RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>gi|239750367 PREDICTED: hypothetical protein XP_002347407 [Homo
           sapiens]
          Length = 121

 Score =  243 bits (619), Expect = 3e-65
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR 60
           MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR
Sbjct: 1   MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR 60

Query: 61  RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
           RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG
Sbjct: 61  RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>gi|239744671 PREDICTED: hypothetical protein XP_002343233 [Homo
           sapiens]
          Length = 121

 Score =  243 bits (619), Expect = 3e-65
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR 60
           MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR
Sbjct: 1   MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR 60

Query: 61  RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
           RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG
Sbjct: 61  RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>gi|239754487 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 72  EQEEGAGRTREEEGGTSGRESRKKMGR-GREWGRQRRKTGKAGEASSQRG 120
           E+EEG G  R  EGG  GRE R+K  + GRE GR+  K  K G    ++G
Sbjct: 204 EKEEGIGE-RGREGGKEGREGRRKERKEGREGGREGGK--KRGREEGRKG 250



 Score = 29.6 bits (65), Expect = 0.57
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 78  GRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAG--EASSQRGK 121
           G  +EE  G  GRE  K+   GRE  R+ RK G+ G  E   +RG+
Sbjct: 202 GGEKEEGIGERGREGGKE---GREGRRKERKEGREGGREGGKKRGR 244


>gi|239749042 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 72  EQEEGAGRTREEEGGTSGRESRKKMGR-GREWGRQRRKTGKAGEASSQRG 120
           E+EEG G  R  EGG  GRE R+K  + GRE GR+  K  K G    ++G
Sbjct: 204 EKEEGIGE-RGREGGKEGREGRRKERKEGREGGREGGK--KRGREEGRKG 250



 Score = 29.6 bits (65), Expect = 0.57
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 78  GRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAG--EASSQRGK 121
           G  +EE  G  GRE  K+   GRE  R+ RK G+ G  E   +RG+
Sbjct: 202 GGEKEEGIGERGREGGKE---GREGRRKERKEGREGGREGGKKRGR 244


>gi|239743067 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 72  EQEEGAGRTREEEGGTSGRESRKKMGR-GREWGRQRRKTGKAGEASSQRG 120
           E+EEG G  R  EGG  GRE R+K  + GRE GR+  K  K G    ++G
Sbjct: 204 EKEEGIGE-RGREGGKEGREGRRKERKEGREGGREGGK--KRGREEGRKG 250



 Score = 29.6 bits (65), Expect = 0.57
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 78  GRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAG--EASSQRGK 121
           G  +EE  G  GRE  K+   GRE  R+ RK G+ G  E   +RG+
Sbjct: 202 GGEKEEGIGERGREGGKE---GREGRRKERKEGREGGREGGKKRGR 244


>gi|239508713 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 72  EQEEGAGRTREEEGGTSGRESRKKMGR-GREWGRQRRKTGKAGEASSQRG 120
           E+EEG G  R  EGG  GRE R+K  + GRE GR+  K  K G    ++G
Sbjct: 204 EKEEGIGE-RGREGGKEGREGRRKERKEGREGGREGGK--KRGREEGRKG 250



 Score = 29.6 bits (65), Expect = 0.57
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 78  GRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAG--EASSQRGK 121
           G  +EE  G  GRE  K+   GRE  R+ RK G+ G  E   +RG+
Sbjct: 202 GGEKEEGIGERGREGGKE---GREGRRKERKEGREGGREGGKKRGR 244


>gi|188497758 ubiquitin associated protein 2-like isoform a [Homo
           sapiens]
          Length = 1087

 Score = 32.3 bits (72), Expect = 0.087
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 76  GAGRTRE---EEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
           GA R RE   +E G  G +S    GRG E GR+ R  G+ G  S +RG
Sbjct: 143 GASRGREFRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGG--SGRRG 188


>gi|188497756 ubiquitin associated protein 2-like isoform b [Homo
           sapiens]
          Length = 983

 Score = 32.3 bits (72), Expect = 0.087
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 76  GAGRTRE---EEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
           GA R RE   +E G  G +S    GRG E GR+ R  G+ G  S +RG
Sbjct: 143 GASRGREFRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGG--SGRRG 188


>gi|21040355 hemochromatosis protein isoform 10 precursor [Homo
          sapiens]
          Length = 168

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 9  AGKALLRAMLLRTSSLPGKLLVPHL----RNLAPSDTLLRCSSLS 49
          A  ALL  MLL+T+ L G+LL+P L     ++  S T LRC +L+
Sbjct: 5  ARPALLLLMLLQTAVLQGRLLLPPLVKVTHHVTSSVTTLRCRALN 49


>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
            sapiens]
          Length = 1152

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 72   EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
            E+EEG G   EEEG   G E  +    G   G +  +    GE   + G+
Sbjct: 982  EEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGE 1031



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 72   EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRR-------KTGKAGEASSQR 119
            E EEG G   EEEG   G E R+K G G E  R R        K  + GE  ++R
Sbjct: 1026 EGEEGEGEGEEEEGEEEG-EEREKEGEGEENRRNREEEEEEEGKYQETGEEENER 1079



 Score = 29.6 bits (65), Expect = 0.57
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 73  QEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQ 118
           +EEG G   EEEG   G E  +  G   E   +  + G+ GE   +
Sbjct: 888 EEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGE 933



 Score = 29.6 bits (65), Expect = 0.57
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 72  EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
           E E+G G   EEEG   G E   + G G E G    + G+ GE   + G+
Sbjct: 940 EGEDGEGEGEEEEGEWEGEEEEGE-GEGEEEGEGEGEEGE-GEGEEEEGE 987



 Score = 28.9 bits (63), Expect = 0.97
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 72  EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
           E EEG G   EEEG   G E  +  G   E   +  + G+ GE   + G+
Sbjct: 870 EGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGE-GEGEEEEGE 918



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 72   EQEEGAGRTREEEGGTSGRESR-----KKMGRGREWGRQRRKTGKAGEASSQ 118
            E EEG G   EEEG   G E       ++ G G E G    +  + GE   +
Sbjct: 973  EGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGE 1024



 Score = 27.3 bits (59), Expect = 2.8
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 72  EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
           E+ EG G  +EE G   G E  +  G   E   +     + GE   + G+
Sbjct: 799 EETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGE 848



 Score = 27.3 bits (59), Expect = 2.8
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 71  REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
           RE+EE  G   EEEG     E   +   G   G +  + G+ GE   + G+
Sbjct: 826 REEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGE-GEEEGEEGE 875



 Score = 27.3 bits (59), Expect = 2.8
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 72  EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQ 118
           E+EEG G   EEEG   G E  ++ G G E G +    G+  E   +
Sbjct: 843 EEEEGEGE--EEEGEGKGEEEGEE-GEGEEEGEEGEGEGEEEEGEGE 886



 Score = 27.3 bits (59), Expect = 2.8
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 72  EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQ 118
           E+EEG G   EEEG   G E   + G+G E G +    G+  E   +
Sbjct: 896 EEEEGEGE-GEEEGEGEGEEEEGE-GKGEEEGEEGEGEGEEEEGEGE 940



 Score = 26.9 bits (58), Expect = 3.7
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 72  EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
           E+EEG     EEEG   G E  +  G G E   +  +    GE   + G+
Sbjct: 949 EEEEGEWEGEEEEGEGEGEEEGE--GEGEEGEGEGEEEEGEGEGEEEEGE 996



 Score = 26.6 bits (57), Expect = 4.8
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 73   QEEGAGRTREEEGGTSGRESRKKMG-------RGREWGRQRRKTGKAGEASSQR 119
            +EEG G   EEE G    E   + G        G E G +R K G+  E    R
Sbjct: 1006 EEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNR 1059



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 71  REQEEGAGRTR--EEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
           R++EE AG+    EEEG     E  +  GRG E  ++     + GE    +G+
Sbjct: 775 RKKEERAGKEEKGEEEGDQGEGEEEETEGRGEE--KEEGGEVEGGEVEEGKGE 825


>gi|13129006 nucleolar protein GU2 [Homo sapiens]
          Length = 737

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 58  WARRLPAWVPRSLREQEEG--AGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEA 115
           W   +PA +P  + E  +G  +  +R+  G +SGR  R     GR  GR  R++ +   +
Sbjct: 653 WILSVPAKLPE-IEEYYDGNTSSNSRQRSGWSSGRSGRSGRSGGRSGGRSGRQSRQGSRS 711

Query: 116 SSQR 119
            S++
Sbjct: 712 GSRQ 715



 Score = 26.9 bits (58), Expect = 3.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)

Query: 77  AGRTREEEGGTSGRESR-------KKMGRGREWGRQRRKTG 110
           +GR+    GG SGR+SR       ++ GR R   R R ++G
Sbjct: 690 SGRSGGRSGGRSGRQSRQGSRSGSRQDGRRRSGNRNRSRSG 730


>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 15/80 (18%)

Query: 42  LLRCSSLSQGCSRLDGWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGRE 101
           ++ CS +S+ C++        P W    +RE+E     TR+E  G   RES +K  R RE
Sbjct: 19  MVSCSHISKPCTQ--------PGW-QSEIREREREI-ETRKE--GKKERESERKKER-RE 65

Query: 102 WGRQRRKTGKAGEASSQRGK 121
             R++RK  +  E   +RGK
Sbjct: 66  --REKRKREREKERKRERGK 83



 Score = 26.9 bits (58), Expect = 3.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 71  REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGK-----AGEASSQR 119
           R  +EG  R R+EE     R+ R++    RE  R+R++  K      GE   +R
Sbjct: 125 RTSKEGKERERKEERKREERKERERKKEEREKERERKERKKRERKQVGEKEEER 178



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 71  REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
           R ++E  G  ++EE     R   K+   G E  ++++K  K    +S+ GK
Sbjct: 81  RGKKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGK 131


>gi|169218106 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 436

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 7/59 (11%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQRGK 121
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+ GE   Q G+
Sbjct: 145 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQMGEQEGQMGE 203



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQRGK 121
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  E   Q G+
Sbjct: 138 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQMGE 196



 Score = 26.2 bits (56), Expect = 6.3
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 61  RLPAWVPRSLREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAG 113
           ++P      +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  
Sbjct: 45  KIPLPQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVR 104

Query: 114 EASSQ 118
           E   Q
Sbjct: 105 EQEGQ 109



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  E   Q
Sbjct: 61  VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 116



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  E   Q
Sbjct: 68  VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 123



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  E   Q
Sbjct: 75  VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 130



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  E   Q
Sbjct: 82  VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 137



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  E   Q
Sbjct: 89  VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 144



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  E   Q
Sbjct: 96  VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 151



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  E   Q
Sbjct: 103 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 158



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  E   Q
Sbjct: 110 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 165



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  E   Q
Sbjct: 117 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 172



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  E   Q
Sbjct: 124 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 179



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 70  LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
           +REQE    E  G+ RE+EG    +E   R++ G+ RE  G+ R + G+  E   Q
Sbjct: 131 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 186


>gi|218749848 family with sequence similarity 38, member A [Homo
            sapiens]
          Length = 2090

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 36   LAPSDTLLRCSSLSQGCSRLDGWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKK 95
            L P DT  R  SL     + +G AR+  A +    RE+EEG     EE+   +GRE R  
Sbjct: 1430 LRPRDT--RRISLRFRRRKKEGPARKGAAAIEAEDREEEEG----EEEKEAPTGREKRPS 1483

Query: 96   MGRGREWGRQRRKTG 110
               GR     RR  G
Sbjct: 1484 RSGGRVRAAGRRLQG 1498


>gi|81295809 pericentrin [Homo sapiens]
          Length = 3336

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 15/121 (12%)

Query: 2    LQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWARR 61
            L SQ     +A      LR        L   +  L      LRCS   +         R 
Sbjct: 2816 LHSQQQLEAEAQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLERE---------RE 2866

Query: 62   LPAWVPRSLREQEEGAGRTREEEGGTSGR---ESRKKMGRGREWGRQRRKTGKAGEASSQ 118
             PAW+   L   E+   R +E+EG  + R   E+R+      +W + +R   K  E   Q
Sbjct: 2867 KPAWLQAEL---EQSHPRLKEQEGRKAARRSAEARQSPAAAEQWRKWQRDKEKLRELELQ 2923

Query: 119  R 119
            R
Sbjct: 2924 R 2924


>gi|5031759 homeobox A11 [Homo sapiens]
          Length = 313

 Score = 30.0 bits (66), Expect = 0.43
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 67  PRSLREQEEGAGRTREEEGGTSGRESRKK 95
           P S    E  +G T ++ GG+SG+ +RKK
Sbjct: 216 PESSSSPESSSGHTEDKAGGSSGQRTRKK 244


>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
           sapiens]
          Length = 2302

 Score = 30.0 bits (66), Expect = 0.43
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 66  VPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
           +PR L E E  + R  EE     G + R+K   G     ++ K  K   AS  +GK
Sbjct: 201 IPRVLNEDELPSVRPEEE-----GEKKRRKKSAGERLKEEKPKKSKTSGASKTKGK 251


>gi|169171337 PREDICTED: similar to Six transmembrane epithelial
           antigen of prostate [Homo sapiens]
          Length = 450

 Score = 30.0 bits (66), Expect = 0.43
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 76  GAGRTREEEGG-TSGRESRKKMGRGREWGRQRRKTGKA---GEASSQRG 120
           GAGR  ++E G  +G E+ +  G G  WGR       A   G+A+++ G
Sbjct: 89  GAGRATDKEAGPAAGLEASRSGGSGAAWGRHLPAAAAAETHGQATARSG 137


>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 275

 Score = 30.0 bits (66), Expect = 0.43
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 21/97 (21%)

Query: 42  LLRCSSLSQGCSRLDGWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRG-- 99
           ++ CS +S+ C++ +   ++      +  RE+E    + R+ E G   ++ RKK  RG  
Sbjct: 19  MVSCSHISKPCTQRESERKKERREREKRKRERE----KERKRERGKKEKKKRKKRERGKE 74

Query: 100 ---------------REWGRQRRKTGKAGEASSQRGK 121
                          RE  R++RK  K      QRG+
Sbjct: 75  RERKRKEREKQRKERREKERRKRKKEKKKRERKQRGR 111


>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
           sapiens]
          Length = 600

 Score = 30.0 bits (66), Expect = 0.43
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 71  REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
           RE++    R R++E     RE  K     RE  RQR K  K  +  S+RG+
Sbjct: 165 RERQRQTERNRQKE-----REREKNRQERRERERQREKENKTEDRHSERGR 210



 Score = 27.3 bits (59), Expect = 2.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 71  REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQR-RKTGKAGEASSQR 119
           RE+E    R RE E     +E  +K  R  E  R+R R+TG+ G   ++R
Sbjct: 321 RERERERERQRETERDRE-KERERKRKRQTEMDRERNRQTGREGRRQAER 369



 Score = 26.9 bits (58), Expect = 3.7
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 68  RSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQR-RKTGKAGEASS 117
           R   +Q E       E G   GRE  K+ GR R+  RQ  R+ G+  + S+
Sbjct: 412 RETEKQREREKDRESERGRERGREREKQKGRERDRERQTDRQAGRQRKRST 462


>gi|169170942 PREDICTED: hypothetical protein LOC256227 [Homo
           sapiens]
          Length = 450

 Score = 30.0 bits (66), Expect = 0.43
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 76  GAGRTREEEGG-TSGRESRKKMGRGREWGRQRRKTGKA---GEASSQRG 120
           GAGR  ++E G  +G E+ +  G G  WGR       A   G+A+++ G
Sbjct: 89  GAGRATDKEAGPAAGLEASRSGGSGAAWGRHLPAAAAAETHGQATARSG 137


>gi|82659105 protein tyrosine phosphatase-like, member A [Homo
           sapiens]
          Length = 288

 Score = 30.0 bits (66), Expect = 0.43
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 53  SRLDGWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTG 110
           SR  GWA   P  +P S       A     +E GT+G  S  + G  RE   +RR+ G
Sbjct: 14  SRAAGWAGSPPTLLPLSPTSPRCAATMASSDEDGTNGGAS--EAGEDREAPGERRRLG 69


>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 449

 Score = 29.3 bits (64), Expect = 0.74
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 71  REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRK 108
           R +  G G +R +EG  SGR    +   GRE GR RR+
Sbjct: 329 RGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRR 366


>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
           sapiens]
          Length = 402

 Score = 29.3 bits (64), Expect = 0.74
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 71  REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRK 108
           R +  G G +R +EG  SGR    +   GRE GR RR+
Sbjct: 282 RGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRR 319


>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
           sapiens]
          Length = 449

 Score = 29.3 bits (64), Expect = 0.74
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 71  REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRK 108
           R +  G G +R +EG  SGR    +   GRE GR RR+
Sbjct: 329 RGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRR 366


>gi|31543392 peroxisome proliferator-activated receptor gamma,
           coactivator 1 beta [Homo sapiens]
          Length = 1023

 Score = 29.3 bits (64), Expect = 0.74
 Identities = 17/48 (35%), Positives = 21/48 (43%)

Query: 61  RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRK 108
           R PA + +   E EE      EEE        RK+ GRG  W +  RK
Sbjct: 421 RRPARLQQQEEEDEEEEEEEEEEEKEEEEEWGRKRPGRGLPWTKLGRK 468


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 29.3 bits (64), Expect = 0.74
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 68  RSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
           RS      G  R+R    G S   SR  + RGR   R  ++ G++G +S ++ K
Sbjct: 682 RSRTPARRGRSRSRTPRRGRS--RSRSLVRRGRSHSRTPQRRGRSGSSSERKNK 733


>gi|6005920 thyrotropin-releasing hormone [Homo sapiens]
          Length = 242

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 72  EQEEGAGRTREEEGGTSGRESRKKMGR 98
           E+EEG     EEEGG  G   R+  GR
Sbjct: 92  EEEEGVEEEEEEEGGAVGPHKRQHPGR 118


>gi|239755629 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 92

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 57  GWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEAS 116
           GW RR       S+  Q +GA     + G        K  GRG  WG +    G AG AS
Sbjct: 19  GW-RRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGWGLR----GGAGPAS 73

Query: 117 SQRG 120
           S  G
Sbjct: 74  SYLG 77


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,742,402
Number of Sequences: 37866
Number of extensions: 222426
Number of successful extensions: 1375
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 243
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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