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Search of human proteins with 239744671
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744671 PREDICTED: hypothetical protein XP_002343233 [Homo
sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755851 PREDICTED: hypothetical protein [Homo sapiens] 243 3e-65
gi|239750367 PREDICTED: hypothetical protein XP_002347407 [Homo ... 243 3e-65
gi|239744671 PREDICTED: hypothetical protein XP_002343233 [Homo ... 243 3e-65
gi|239754487 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|239749042 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|239743067 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|239508713 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|188497758 ubiquitin associated protein 2-like isoform a [Homo... 32 0.087
gi|188497756 ubiquitin associated protein 2-like isoform b [Homo... 32 0.087
gi|21040355 hemochromatosis protein isoform 10 precursor [Homo s... 32 0.11
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 32 0.11
gi|13129006 nucleolar protein GU2 [Homo sapiens] 32 0.11
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 31 0.25
gi|169218106 PREDICTED: hypothetical protein, partial [Homo sapi... 31 0.25
gi|218749848 family with sequence similarity 38, member A [Homo ... 31 0.25
gi|81295809 pericentrin [Homo sapiens] 30 0.33
gi|5031759 homeobox A11 [Homo sapiens] 30 0.43
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 30 0.43
gi|169171337 PREDICTED: similar to Six transmembrane epithelial ... 30 0.43
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 30 0.43
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 30 0.43
gi|169170942 PREDICTED: hypothetical protein LOC256227 [Homo sap... 30 0.43
gi|82659105 protein tyrosine phosphatase-like, member A [Homo sa... 30 0.43
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens] 29 0.74
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 29 0.74
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ... 29 0.74
gi|31543392 peroxisome proliferator-activated receptor gamma, co... 29 0.74
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 29 0.74
gi|6005920 thyrotropin-releasing hormone [Homo sapiens] 29 0.97
gi|239755629 PREDICTED: hypothetical protein [Homo sapiens] 29 0.97
>gi|239755851 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 243 bits (619), Expect = 3e-65
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR 60
MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR
Sbjct: 1 MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR 60
Query: 61 RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG
Sbjct: 61 RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|239750367 PREDICTED: hypothetical protein XP_002347407 [Homo
sapiens]
Length = 121
Score = 243 bits (619), Expect = 3e-65
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR 60
MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR
Sbjct: 1 MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR 60
Query: 61 RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG
Sbjct: 61 RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|239744671 PREDICTED: hypothetical protein XP_002343233 [Homo
sapiens]
Length = 121
Score = 243 bits (619), Expect = 3e-65
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR 60
MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR
Sbjct: 1 MLQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWAR 60
Query: 61 RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG
Sbjct: 61 RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|239754487 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 35.8 bits (81), Expect = 0.008
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGR-GREWGRQRRKTGKAGEASSQRG 120
E+EEG G R EGG GRE R+K + GRE GR+ K K G ++G
Sbjct: 204 EKEEGIGE-RGREGGKEGREGRRKERKEGREGGREGGK--KRGREEGRKG 250
Score = 29.6 bits (65), Expect = 0.57
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 78 GRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAG--EASSQRGK 121
G +EE G GRE K+ GRE R+ RK G+ G E +RG+
Sbjct: 202 GGEKEEGIGERGREGGKE---GREGRRKERKEGREGGREGGKKRGR 244
>gi|239749042 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 35.8 bits (81), Expect = 0.008
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGR-GREWGRQRRKTGKAGEASSQRG 120
E+EEG G R EGG GRE R+K + GRE GR+ K K G ++G
Sbjct: 204 EKEEGIGE-RGREGGKEGREGRRKERKEGREGGREGGK--KRGREEGRKG 250
Score = 29.6 bits (65), Expect = 0.57
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 78 GRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAG--EASSQRGK 121
G +EE G GRE K+ GRE R+ RK G+ G E +RG+
Sbjct: 202 GGEKEEGIGERGREGGKE---GREGRRKERKEGREGGREGGKKRGR 244
>gi|239743067 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 35.8 bits (81), Expect = 0.008
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGR-GREWGRQRRKTGKAGEASSQRG 120
E+EEG G R EGG GRE R+K + GRE GR+ K K G ++G
Sbjct: 204 EKEEGIGE-RGREGGKEGREGRRKERKEGREGGREGGK--KRGREEGRKG 250
Score = 29.6 bits (65), Expect = 0.57
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 78 GRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAG--EASSQRGK 121
G +EE G GRE K+ GRE R+ RK G+ G E +RG+
Sbjct: 202 GGEKEEGIGERGREGGKE---GREGRRKERKEGREGGREGGKKRGR 244
>gi|239508713 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 35.8 bits (81), Expect = 0.008
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGR-GREWGRQRRKTGKAGEASSQRG 120
E+EEG G R EGG GRE R+K + GRE GR+ K K G ++G
Sbjct: 204 EKEEGIGE-RGREGGKEGREGRRKERKEGREGGREGGK--KRGREEGRKG 250
Score = 29.6 bits (65), Expect = 0.57
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 78 GRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAG--EASSQRGK 121
G +EE G GRE K+ GRE R+ RK G+ G E +RG+
Sbjct: 202 GGEKEEGIGERGREGGKE---GREGRRKERKEGREGGREGGKKRGR 244
>gi|188497758 ubiquitin associated protein 2-like isoform a [Homo
sapiens]
Length = 1087
Score = 32.3 bits (72), Expect = 0.087
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 76 GAGRTRE---EEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
GA R RE +E G G +S GRG E GR+ R G+ G S +RG
Sbjct: 143 GASRGREFRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGG--SGRRG 188
>gi|188497756 ubiquitin associated protein 2-like isoform b [Homo
sapiens]
Length = 983
Score = 32.3 bits (72), Expect = 0.087
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 76 GAGRTRE---EEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRG 120
GA R RE +E G G +S GRG E GR+ R G+ G S +RG
Sbjct: 143 GASRGREFRGQENGLDGTKSGGPSGRGTERGRRGRGRGRGG--SGRRG 188
>gi|21040355 hemochromatosis protein isoform 10 precursor [Homo
sapiens]
Length = 168
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 9 AGKALLRAMLLRTSSLPGKLLVPHL----RNLAPSDTLLRCSSLS 49
A ALL MLL+T+ L G+LL+P L ++ S T LRC +L+
Sbjct: 5 ARPALLLLMLLQTAVLQGRLLLPPLVKVTHHVTSSVTTLRCRALN 49
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
E+EEG G EEEG G E + G G + + GE + G+
Sbjct: 982 EEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGE 1031
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRR-------KTGKAGEASSQR 119
E EEG G EEEG G E R+K G G E R R K + GE ++R
Sbjct: 1026 EGEEGEGEGEEEEGEEEG-EEREKEGEGEENRRNREEEEEEEGKYQETGEEENER 1079
Score = 29.6 bits (65), Expect = 0.57
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 73 QEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQ 118
+EEG G EEEG G E + G E + + G+ GE +
Sbjct: 888 EEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGE 933
Score = 29.6 bits (65), Expect = 0.57
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
E E+G G EEEG G E + G G E G + G+ GE + G+
Sbjct: 940 EGEDGEGEGEEEEGEWEGEEEEGE-GEGEEEGEGEGEEGE-GEGEEEEGE 987
Score = 28.9 bits (63), Expect = 0.97
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
E EEG G EEEG G E + G E + + G+ GE + G+
Sbjct: 870 EGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGE-GEGEEEEGE 918
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 72 EQEEGAGRTREEEGGTSGRESR-----KKMGRGREWGRQRRKTGKAGEASSQ 118
E EEG G EEEG G E ++ G G E G + + GE +
Sbjct: 973 EGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGE 1024
Score = 27.3 bits (59), Expect = 2.8
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
E+ EG G +EE G G E + G E + + GE + G+
Sbjct: 799 EETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGE 848
Score = 27.3 bits (59), Expect = 2.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 71 REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
RE+EE G EEEG E + G G + + G+ GE + G+
Sbjct: 826 REEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGE-GEEEGEEGE 875
Score = 27.3 bits (59), Expect = 2.8
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQ 118
E+EEG G EEEG G E ++ G G E G + G+ E +
Sbjct: 843 EEEEGEGE--EEEGEGKGEEEGEE-GEGEEEGEEGEGEGEEEEGEGE 886
Score = 27.3 bits (59), Expect = 2.8
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQ 118
E+EEG G EEEG G E + G+G E G + G+ E +
Sbjct: 896 EEEEGEGE-GEEEGEGEGEEEEGE-GKGEEEGEEGEGEGEEEEGEGE 940
Score = 26.9 bits (58), Expect = 3.7
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
E+EEG EEEG G E + G G E + + GE + G+
Sbjct: 949 EEEEGEWEGEEEEGEGEGEEEGE--GEGEEGEGEGEEEEGEGEGEEEEGE 996
Score = 26.6 bits (57), Expect = 4.8
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 73 QEEGAGRTREEEGGTSGRESRKKMG-------RGREWGRQRRKTGKAGEASSQR 119
+EEG G EEE G E + G G E G +R K G+ E R
Sbjct: 1006 EEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNR 1059
Score = 25.8 bits (55), Expect = 8.2
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 71 REQEEGAGRTR--EEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
R++EE AG+ EEEG E + GRG E ++ + GE +G+
Sbjct: 775 RKKEERAGKEEKGEEEGDQGEGEEEETEGRGEE--KEEGGEVEGGEVEEGKGE 825
>gi|13129006 nucleolar protein GU2 [Homo sapiens]
Length = 737
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 58 WARRLPAWVPRSLREQEEG--AGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEA 115
W +PA +P + E +G + +R+ G +SGR R GR GR R++ + +
Sbjct: 653 WILSVPAKLPE-IEEYYDGNTSSNSRQRSGWSSGRSGRSGRSGGRSGGRSGRQSRQGSRS 711
Query: 116 SSQR 119
S++
Sbjct: 712 GSRQ 715
Score = 26.9 bits (58), Expect = 3.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 77 AGRTREEEGGTSGRESR-------KKMGRGREWGRQRRKTG 110
+GR+ GG SGR+SR ++ GR R R R ++G
Sbjct: 690 SGRSGGRSGGRSGRQSRQGSRSGSRQDGRRRSGNRNRSRSG 730
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 15/80 (18%)
Query: 42 LLRCSSLSQGCSRLDGWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGRE 101
++ CS +S+ C++ P W +RE+E TR+E G RES +K R RE
Sbjct: 19 MVSCSHISKPCTQ--------PGW-QSEIREREREI-ETRKE--GKKERESERKKER-RE 65
Query: 102 WGRQRRKTGKAGEASSQRGK 121
R++RK + E +RGK
Sbjct: 66 --REKRKREREKERKRERGK 83
Score = 26.9 bits (58), Expect = 3.7
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 71 REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGK-----AGEASSQR 119
R +EG R R+EE R+ R++ RE R+R++ K GE +R
Sbjct: 125 RTSKEGKERERKEERKREERKERERKKEEREKERERKERKKRERKQVGEKEEER 178
Score = 25.8 bits (55), Expect = 8.2
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 71 REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
R ++E G ++EE R K+ G E ++++K K +S+ GK
Sbjct: 81 RGKKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGK 131
>gi|169218106 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 436
Score = 30.8 bits (68), Expect = 0.25
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQRGK 121
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ GE Q G+
Sbjct: 145 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQMGEQEGQMGE 203
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQRGK 121
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ E Q G+
Sbjct: 138 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQMGE 196
Score = 26.2 bits (56), Expect = 6.3
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 61 RLPAWVPRSLREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAG 113
++P +REQE E G+ RE+EG +E R++ G+ RE G+ R + G+
Sbjct: 45 KIPLPQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVR 104
Query: 114 EASSQ 118
E Q
Sbjct: 105 EQEGQ 109
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ E Q
Sbjct: 61 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 116
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ E Q
Sbjct: 68 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 123
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ E Q
Sbjct: 75 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 130
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ E Q
Sbjct: 82 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 137
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ E Q
Sbjct: 89 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 144
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ E Q
Sbjct: 96 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 151
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ E Q
Sbjct: 103 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 158
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ E Q
Sbjct: 110 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 165
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ E Q
Sbjct: 117 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 172
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ E Q
Sbjct: 124 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 179
Score = 25.8 bits (55), Expect = 8.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 70 LREQE----EGAGRTREEEGGTSGRES--RKKMGRGREW-GRQRRKTGKAGEASSQ 118
+REQE E G+ RE+EG +E R++ G+ RE G+ R + G+ E Q
Sbjct: 131 VREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQ 186
>gi|218749848 family with sequence similarity 38, member A [Homo
sapiens]
Length = 2090
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 36 LAPSDTLLRCSSLSQGCSRLDGWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKK 95
L P DT R SL + +G AR+ A + RE+EEG EE+ +GRE R
Sbjct: 1430 LRPRDT--RRISLRFRRRKKEGPARKGAAAIEAEDREEEEG----EEEKEAPTGREKRPS 1483
Query: 96 MGRGREWGRQRRKTG 110
GR RR G
Sbjct: 1484 RSGGRVRAAGRRLQG 1498
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 30.4 bits (67), Expect = 0.33
Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 2 LQSQSAAAGKALLRAMLLRTSSLPGKLLVPHLRNLAPSDTLLRCSSLSQGCSRLDGWARR 61
L SQ +A LR L + L LRCS + R
Sbjct: 2816 LHSQQQLEAEAQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLERE---------RE 2866
Query: 62 LPAWVPRSLREQEEGAGRTREEEGGTSGR---ESRKKMGRGREWGRQRRKTGKAGEASSQ 118
PAW+ L E+ R +E+EG + R E+R+ +W + +R K E Q
Sbjct: 2867 KPAWLQAEL---EQSHPRLKEQEGRKAARRSAEARQSPAAAEQWRKWQRDKEKLRELELQ 2923
Query: 119 R 119
R
Sbjct: 2924 R 2924
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 30.0 bits (66), Expect = 0.43
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 67 PRSLREQEEGAGRTREEEGGTSGRESRKK 95
P S E +G T ++ GG+SG+ +RKK
Sbjct: 216 PESSSSPESSSGHTEDKAGGSSGQRTRKK 244
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 30.0 bits (66), Expect = 0.43
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 66 VPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
+PR L E E + R EE G + R+K G ++ K K AS +GK
Sbjct: 201 IPRVLNEDELPSVRPEEE-----GEKKRRKKSAGERLKEEKPKKSKTSGASKTKGK 251
>gi|169171337 PREDICTED: similar to Six transmembrane epithelial
antigen of prostate [Homo sapiens]
Length = 450
Score = 30.0 bits (66), Expect = 0.43
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 76 GAGRTREEEGG-TSGRESRKKMGRGREWGRQRRKTGKA---GEASSQRG 120
GAGR ++E G +G E+ + G G WGR A G+A+++ G
Sbjct: 89 GAGRATDKEAGPAAGLEASRSGGSGAAWGRHLPAAAAAETHGQATARSG 137
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 30.0 bits (66), Expect = 0.43
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 42 LLRCSSLSQGCSRLDGWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRG-- 99
++ CS +S+ C++ + ++ + RE+E + R+ E G ++ RKK RG
Sbjct: 19 MVSCSHISKPCTQRESERKKERREREKRKRERE----KERKRERGKKEKKKRKKRERGKE 74
Query: 100 ---------------REWGRQRRKTGKAGEASSQRGK 121
RE R++RK K QRG+
Sbjct: 75 RERKRKEREKQRKERREKERRKRKKEKKKRERKQRGR 111
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 30.0 bits (66), Expect = 0.43
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 71 REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
RE++ R R++E RE K RE RQR K K + S+RG+
Sbjct: 165 RERQRQTERNRQKE-----REREKNRQERRERERQREKENKTEDRHSERGR 210
Score = 27.3 bits (59), Expect = 2.8
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 71 REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQR-RKTGKAGEASSQR 119
RE+E R RE E +E +K R E R+R R+TG+ G ++R
Sbjct: 321 RERERERERQRETERDRE-KERERKRKRQTEMDRERNRQTGREGRRQAER 369
Score = 26.9 bits (58), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 68 RSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQR-RKTGKAGEASS 117
R +Q E E G GRE K+ GR R+ RQ R+ G+ + S+
Sbjct: 412 RETEKQREREKDRESERGRERGREREKQKGRERDRERQTDRQAGRQRKRST 462
>gi|169170942 PREDICTED: hypothetical protein LOC256227 [Homo
sapiens]
Length = 450
Score = 30.0 bits (66), Expect = 0.43
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 76 GAGRTREEEGG-TSGRESRKKMGRGREWGRQRRKTGKA---GEASSQRG 120
GAGR ++E G +G E+ + G G WGR A G+A+++ G
Sbjct: 89 GAGRATDKEAGPAAGLEASRSGGSGAAWGRHLPAAAAAETHGQATARSG 137
>gi|82659105 protein tyrosine phosphatase-like, member A [Homo
sapiens]
Length = 288
Score = 30.0 bits (66), Expect = 0.43
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 53 SRLDGWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTG 110
SR GWA P +P S A +E GT+G S + G RE +RR+ G
Sbjct: 14 SRAAGWAGSPPTLLPLSPTSPRCAATMASSDEDGTNGGAS--EAGEDREAPGERRRLG 69
>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 29.3 bits (64), Expect = 0.74
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 71 REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRK 108
R + G G +R +EG SGR + GRE GR RR+
Sbjct: 329 RGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRR 366
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 29.3 bits (64), Expect = 0.74
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 71 REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRK 108
R + G G +R +EG SGR + GRE GR RR+
Sbjct: 282 RGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRR 319
>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
sapiens]
Length = 449
Score = 29.3 bits (64), Expect = 0.74
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 71 REQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRK 108
R + G G +R +EG SGR + GRE GR RR+
Sbjct: 329 RGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRR 366
>gi|31543392 peroxisome proliferator-activated receptor gamma,
coactivator 1 beta [Homo sapiens]
Length = 1023
Score = 29.3 bits (64), Expect = 0.74
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 61 RLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRK 108
R PA + + E EE EEE RK+ GRG W + RK
Sbjct: 421 RRPARLQQQEEEDEEEEEEEEEEEKEEEEEWGRKRPGRGLPWTKLGRK 468
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 29.3 bits (64), Expect = 0.74
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 68 RSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEASSQRGK 121
RS G R+R G S SR + RGR R ++ G++G +S ++ K
Sbjct: 682 RSRTPARRGRSRSRTPRRGRS--RSRSLVRRGRSHSRTPQRRGRSGSSSERKNK 733
>gi|6005920 thyrotropin-releasing hormone [Homo sapiens]
Length = 242
Score = 28.9 bits (63), Expect = 0.97
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 72 EQEEGAGRTREEEGGTSGRESRKKMGR 98
E+EEG EEEGG G R+ GR
Sbjct: 92 EEEEGVEEEEEEEGGAVGPHKRQHPGR 118
>gi|239755629 PREDICTED: hypothetical protein [Homo sapiens]
Length = 92
Score = 28.9 bits (63), Expect = 0.97
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 57 GWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEAS 116
GW RR S+ Q +GA + G K GRG WG + G AG AS
Sbjct: 19 GW-RRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGWGLR----GGAGPAS 73
Query: 117 SQRG 120
S G
Sbjct: 74 SYLG 77
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,742,402
Number of Sequences: 37866
Number of extensions: 222426
Number of successful extensions: 1375
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 243
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.