Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 116805350
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
(348 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 701 0.0
gi|157743259 H6 family homeobox 3 [Homo sapiens] 181 7e-46
gi|70608170 H6 family homeobox 2 [Homo sapiens] 142 6e-34
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 119 3e-27
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 118 7e-27
gi|4502365 NK3 homeobox 2 [Homo sapiens] 104 1e-22
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 97 2e-20
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 96 5e-20
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 96 6e-20
gi|157426823 NK2 homeobox 4 [Homo sapiens] 96 6e-20
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 95 8e-20
gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi... 91 2e-18
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 90 3e-18
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 90 3e-18
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens] 89 4e-18
gi|39930383 BarH-like homeobox 2 [Homo sapiens] 88 1e-17
gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens] 87 2e-17
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 87 2e-17
gi|31377777 NK2 homeobox 8 [Homo sapiens] 86 5e-17
gi|89257348 homeo box HB9 [Homo sapiens] 85 1e-16
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] 85 1e-16
gi|226437602 NK1 homeobox 2 [Homo sapiens] 84 1e-16
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 84 1e-16
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 84 1e-16
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 84 1e-16
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 84 1e-16
gi|148613882 homeobox A4 [Homo sapiens] 84 2e-16
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 84 2e-16
gi|19923391 homeobox D3 [Homo sapiens] 82 5e-16
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens] 82 5e-16
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 701 bits (1808), Expect = 0.0
Identities = 348/348 (100%), Positives = 348/348 (100%)
Query: 1 MPDELTEPGRATPARASSFLIENLLAAEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQA 60
MPDELTEPGRATPARASSFLIENLLAAEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQA
Sbjct: 1 MPDELTEPGRATPARASSFLIENLLAAEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQA 60
Query: 61 RRRRLQRRRQLLAGTGPGGEARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRA 120
RRRRLQRRRQLLAGTGPGGEARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRA
Sbjct: 61 RRRRLQRRRQLLAGTGPGGEARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRA 120
Query: 121 HGGYGGGLSPDTSDRDSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEAS 180
HGGYGGGLSPDTSDRDSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEAS
Sbjct: 121 HGGYGGGLSPDTSDRDSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEAS 180
Query: 181 ELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASL 240
ELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASL
Sbjct: 181 ELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASL 240
Query: 241 QLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPA 300
QLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPA
Sbjct: 241 QLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPA 300
Query: 301 TLPFPLAPAAPAPPPPLLGFSGALAYPLAAFPAAASVPFLRAQMPGLV 348
TLPFPLAPAAPAPPPPLLGFSGALAYPLAAFPAAASVPFLRAQMPGLV
Sbjct: 301 TLPFPLAPAAPAPPPPLLGFSGALAYPLAAFPAAASVPFLRAQMPGLV 348
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 181 bits (460), Expect = 7e-46
Identities = 117/251 (46%), Positives = 139/251 (55%), Gaps = 33/251 (13%)
Query: 114 ARWYPRAHGGYGGGLS-PDTSDR-----DSPETGEEMGRAEGAWPRGPGPGAVQREAAEL 167
A WYP GG L P+ S++ SP +G + E P + ++ +
Sbjct: 115 AWWYPYTLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDE 174
Query: 168 AARGPAAGTEEASELAEVPAAAGETRGGVGVGGG-----------------RKKKTRTVF 210
+ E E P AAG + G G RKKKTRTVF
Sbjct: 175 IILEESDSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVF 234
Query: 211 SRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAAS 270
SRSQVFQLESTFD+KRYLSS+ERAGLAASL LTETQVKIWFQNRRNKWKRQLAAELEAA+
Sbjct: 235 SRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAAN 294
Query: 271 LSPPGAQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPLLGFSGALAYPLAA 330
LS AQR+VRVP+LYHE+ A AA A P P++ PLL F + Y +
Sbjct: 295 LSHAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVS-------QPLLTFPHPVYY---S 344
Query: 331 FPAAASVPFLR 341
P +SVP LR
Sbjct: 345 HPVVSSVPLLR 355
>gi|70608170 H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 142 bits (357), Expect = 6e-34
Identities = 82/159 (51%), Positives = 102/159 (64%), Gaps = 7/159 (4%)
Query: 154 GPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGV---GGGRKKKTRTVF 210
G GPG ++R + +E A P+ E G G KKKTRTVF
Sbjct: 97 GSGPGGLERTPFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGAERQAGAAKKKTRTVF 156
Query: 211 SRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAAS 270
SRSQV+QLESTFD+KRYLSS+ERA LA+SLQLTETQVK WFQNRRNKWKRQL+AELEAA+
Sbjct: 157 SRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAAN 216
Query: 271 LSPPGAQRLVRVPVLYHESP----PAAAAAGPPATLPFP 305
++ AQ LV +P+++ +S P + PA L +P
Sbjct: 217 MAHASAQTLVSMPLVFRDSSLLRVPVPRSLAFPAPLYYP 255
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 119 bits (299), Expect = 3e-27
Identities = 103/304 (33%), Positives = 124/304 (40%), Gaps = 58/304 (19%)
Query: 80 EARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDR---- 135
E RAL G G +G PP G PF G + GG G S D+ D
Sbjct: 97 ELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDD 156
Query: 136 ------DSPETGEEMGRAE------GAWPRGPG-PGAVQREAAELAARGPAA--GTEEAS 180
++PET G E G RG G GA + +A+ A AA G E S
Sbjct: 157 EDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENS 216
Query: 181 ELAEVPAAAGETRGGVGVG--------------------GGRKKKTRTVFSRSQVFQLES 220
+A+ P GG G G+ ++ RT F+ Q+ LE+
Sbjct: 217 PVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALEN 276
Query: 221 TFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLV 280
F RYLS ER LA SL LTETQVKIWFQNRR KWK+Q PGA
Sbjct: 277 KFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ-----------NPGAD--T 323
Query: 281 RVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPL-LGFSGALAYPL---AAFPAAAS 336
P P AGP LP L+P +P+PP LG G YP AA
Sbjct: 324 SAPTGGGGGP--GPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQ 381
Query: 337 VPFL 340
+PFL
Sbjct: 382 LPFL 385
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 118 bits (296), Expect = 7e-27
Identities = 103/304 (33%), Positives = 123/304 (40%), Gaps = 58/304 (19%)
Query: 80 EARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDR---- 135
E RAL G G +G PP G PF G + GG G S D+ D
Sbjct: 500 ELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDD 559
Query: 136 ------DSPETGEEMGRAE------GAWPRGPG-PGAVQREAAELAARGPAA--GTEEAS 180
++PET G E G RG G GA + +A+ A AA G E S
Sbjct: 560 EDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENS 619
Query: 181 ELAEVPAAAGETRGGVGVG--------------------GGRKKKTRTVFSRSQVFQLES 220
+A P GG G G+ ++ RT F+ Q+ LE+
Sbjct: 620 PVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALEN 679
Query: 221 TFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLV 280
F RYLS ER LA SL LTETQVKIWFQNRR KWK+Q PGA
Sbjct: 680 KFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ-----------NPGAD--T 726
Query: 281 RVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPL-LGFSGALAYPL---AAFPAAAS 336
P P AGP LP L+P +P+PP LG G YP AA
Sbjct: 727 SAPTGGGGGP--GPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQ 784
Query: 337 VPFL 340
+PFL
Sbjct: 785 LPFL 788
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 104 bits (259), Expect = 1e-22
Identities = 102/297 (34%), Positives = 126/297 (42%), Gaps = 51/297 (17%)
Query: 40 GSREDEEEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEARARALLGPGALGLGPRPP 99
G+R + PE D++ A + RR+ G G A L G+L LG
Sbjct: 76 GTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASG-----AGLAGGSLSLGQ--- 127
Query: 100 PGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGRAEGAWPRGPGPGA 159
P L A G +S S SP T ++ G PRG A
Sbjct: 128 ----PVCELAASKDLE--EEAAGRSDSEMSASVSGDRSPRTEDD-----GVGPRGAHVSA 176
Query: 160 VQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLE 219
+ A GPA EE E PAA RKK++R FS +QVF+LE
Sbjct: 177 LCSGAGGGGGSGPAGVAEEEEE----PAAPKP----------RKKRSRAAFSHAQVFELE 222
Query: 220 STFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWK-RQLAAELEAASLSPPGAQR 278
F+ +RYLS ERA LAASL+LTETQVKIWFQNRR K K RQ+AA+L A S P A++
Sbjct: 223 RRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLA---SAPAAKK 279
Query: 279 LVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPLLGFSGALAYPLAAFPAAA 335
V V VL + P PP LL + YP P A
Sbjct: 280 -VAVKVLVRDDQR-------------QYLPGEVLRPPSLLPLQPSYYYPYYCLPGWA 322
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 97.4 bits (241), Expect = 2e-20
Identities = 74/193 (38%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 152 PRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKTRTVFS 211
P PGP AA G A T + + A P R G G+ ++ RT F+
Sbjct: 55 PVAPGP------PGGAAAPGGAGTTPQGTATAAKPK---RKRTGSDSKSGKPRRARTAFT 105
Query: 212 RSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASL 271
Q+ LE+ F RYLS ER LA SL LTETQVKIWFQNRR KWK+Q
Sbjct: 106 YEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ---------- 155
Query: 272 SPPGAQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPL-LGFSGALAYPL-- 328
PGA P P AGP LP L+P +P+PP LG G YP
Sbjct: 156 -NPGAD--TSAPTGGGGGP--GPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHG 210
Query: 329 -AAFPAAASVPFL 340
AA +PFL
Sbjct: 211 PGGLVCAAQLPFL 223
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 95.9 bits (237), Expect = 5e-20
Identities = 58/136 (42%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 203 KKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQL 262
++K R +FS++QVF+LE F +RYLS+ ER LA+SL+LT TQVKIWFQNRR K KRQ
Sbjct: 148 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 207
Query: 263 A-AELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPP-PLLGF 320
LE + +PP R V VPVL + P + P+ + +A + P G+
Sbjct: 208 QDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGY 267
Query: 321 SGALAYPLAAFPAAAS 336
+ A AA AAA+
Sbjct: 268 GNSAAAAAAAAAAAAA 283
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 95.5 bits (236), Expect = 6e-20
Identities = 92/280 (32%), Positives = 118/280 (42%), Gaps = 28/280 (10%)
Query: 65 LQRRRQLLAGTGPGGEARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGY 124
L+++++ LA G AR A L P + L P P A AA P
Sbjct: 20 LEQQQRSLAAAGELS-ARLEATLAPSSCMLAAFKPEAYAGPEA-----AAPGLPELRAEL 73
Query: 125 GGGLSPDTSDRDSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAE 184
G SP P RA P A ++E L TE ++ AE
Sbjct: 74 GRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKAVELEKTE--ADNAE 131
Query: 185 VPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTE 244
P A R++K R +FS++QV++LE F +RYLS+ ER LA+ L+LT
Sbjct: 132 RPRAR------------RRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTS 179
Query: 245 TQVKIWFQNRRNKWKRQ---LAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPA- 300
TQVKIWFQNRR K KRQ EL PP R + VPVL + P + P A
Sbjct: 180 TQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAP 239
Query: 301 TLPFPLAPAAPAPPPPLLGFSGALAYP----LAAFPAAAS 336
L P P G+ GA P AA+PA S
Sbjct: 240 AYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPS 279
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 95.5 bits (236), Expect = 6e-20
Identities = 77/239 (32%), Positives = 106/239 (44%), Gaps = 31/239 (12%)
Query: 112 GAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARG 171
G +++ A G Y G + + + G G A G + P P R ++ G
Sbjct: 98 GVSQFPHGAMGSYCNGGLGNMGELPAYTDGMRGGAATGWYGANPDP----RYSSISRFMG 153
Query: 172 PAAGTEEA-----SELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKR 226
P+AG A + +A+ + G R+K+ R +FS++QV++LE F ++
Sbjct: 154 PSAGVNVAGMGSLTGIADAAKSLGPLHAAAAAAAPRRKR-RVLFSQAQVYELERRFKQQK 212
Query: 227 YLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLS----------PPGA 276
YLS+ ER LA+ + LT TQVKIWFQN R K KRQ A + A L PP +
Sbjct: 213 YLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ-AKDKAAQQLQQEGGLGPPPPPPPS 271
Query: 277 QRLVRVPVLYHESPPAAAAAG----------PPATLPFPLAPAAPAPPPPLLGFSGALA 325
R V VPVL + P A PPA P P PP L G G LA
Sbjct: 272 PRRVAVPVLVKDGKPCQNGASTPTPGQAGPQPPAPTPAPELEELSPSPPALHGPGGGLA 330
Score = 30.8 bits (68), Expect = 1.9
Identities = 33/111 (29%), Positives = 39/111 (35%), Gaps = 35/111 (31%)
Query: 93 GLGPRPPPGPGP-----PFALGCGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGRA 147
GLGP PPP P P P + G P + +P G+
Sbjct: 261 GLGPPPPPPPSPRRVAVPVLVKDG-----------------KPCQNGASTPTPGQ----- 298
Query: 148 EGAWPRGPGPGAVQREAAEL--AARGPAAGTEEASELAEVPAAAGETRGGV 196
G P P P E + A GP G LA + AAAGE GGV
Sbjct: 299 AGPQPPAPTPAPELEELSPSPPALHGPGGG------LAALDAAAGEYSGGV 343
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 95.1 bits (235), Expect = 8e-20
Identities = 77/209 (36%), Positives = 101/209 (48%), Gaps = 30/209 (14%)
Query: 152 PRGPGPGA-VQREAAE-----LAARGPAAGTEEASELAEV-PAAAGETRGGVGVGGGRKK 204
P P PG + +AAE L G A ++ ++ E +R V + +
Sbjct: 120 PAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPR 179
Query: 205 KTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAA 264
K RT F+ Q+ QLE +F+ ++YLS +R LAASL LT+TQVK W+QNRR KWKRQ A
Sbjct: 180 KARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAV 239
Query: 265 ELE--AASLSPPGAQRLVRVPVLYHES-----PPAAA------AAGPPATLPFPLAP--- 308
LE A + + QR+ P Y +S P AA + PP L PL P
Sbjct: 240 GLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRIL 299
Query: 309 -----AAPAPPPPLLGFSGALAYPLAAFP 332
A PPPPL +G L P AA P
Sbjct: 300 IHGLQGASEPPPPLPPLAGVL--PRAAQP 326
>gi|28912912 NK6 transcription factor related, locus 2 [Homo
sapiens]
Length = 277
Score = 90.9 bits (224), Expect = 2e-18
Identities = 68/186 (36%), Positives = 89/186 (47%), Gaps = 23/186 (12%)
Query: 105 PFALGCGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGRAEGAWPRGP--------- 155
P+AL G A + A GG G L T S G +G A G G
Sbjct: 31 PYALQ--GPAGFKAPALGGLGAQLPLGTPHGISDILGRPVGAAGGGLLGGLPRLNGLASS 88
Query: 156 -----GPGAV-----QREAAELAARGPA--AGTEEASELAEVPAAAGETRGGVGVGGGRK 203
GP A + AEL R P G + + + A GGV G+K
Sbjct: 89 AGVYFGPAAAVARGYPKPLAELPGRPPIFWPGVVQGAPWRDPRLAGPAPAGGVLDKDGKK 148
Query: 204 KKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLA 263
K +R FS Q+F LE TF+ +YL+ ERA LA SL +TE+QVK+WFQNRR KW+++ A
Sbjct: 149 KHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHA 208
Query: 264 AELEAA 269
AE+ +A
Sbjct: 209 AEMASA 214
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 90.1 bits (222), Expect = 3e-18
Identities = 84/288 (29%), Positives = 114/288 (39%), Gaps = 46/288 (15%)
Query: 76 GPGGEARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDR 135
GP E A P L +G +PPP P PF P A G G PD S
Sbjct: 23 GPAPEFSASP---PACLYMGRQPPPPPPHPF-----------PGALGALEQGSPPDISPY 68
Query: 136 DSPETGEEMGRAE----------------GAWPRGPGPGAVQREAAELAARGPAAGTEEA 179
+ P ++ A G +P G PG ++ E + P + +A
Sbjct: 69 EVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLE-EPNRVQLPFPWMKSTKA 127
Query: 180 SELAEVPAAAGETRGGVGVGGGRK-KKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAA 238
A G+ GG + K+TRT ++R+Q+ +LE F +Y+S R LA
Sbjct: 128 H------AWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAV 181
Query: 239 SLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGP 298
L LTE +KIWFQNRR KWK++ + + G V E A +
Sbjct: 182 MLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGG-------VAEPEQDCAVTSGEE 234
Query: 299 PATLPFPLAPAAPAPP-PPLLGFSGALAYPLAAFPAAASVPFLRAQMP 345
LP P P PP P+ G L L+A P +SV R Q P
Sbjct: 235 LLALPPPPPPGGAVPPAAPVAAREGRLPPGLSASPQPSSVAPRRPQEP 282
Score = 30.0 bits (66), Expect = 3.2
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 276 AQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPLLGFSGAL 324
A +L + P + P +A PPA L P P PP P G GAL
Sbjct: 10 ATQLYKDPCAFQRGPAPEFSASPPACLYMGRQP-PPPPPHPFPGALGAL 57
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 89.7 bits (221), Expect = 3e-18
Identities = 72/182 (39%), Positives = 92/182 (50%), Gaps = 34/182 (18%)
Query: 172 PAAGTEEASELA---EVPAAAGETRGGVGVGGGR--------KKKTRTVFSRSQVFQLES 220
P G AS L VP G G V GGR ++K R +FS++QV LE
Sbjct: 9 PQPGLNAASPLGGGTRVPER-GVGNSGDSVRGGRSEQPKARQRRKPRVLFSQAQVLALER 67
Query: 221 TFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQ---LAAELEAASLSPPGAQ 277
F +RYLS+ ER LA++LQLT TQVKIWFQNRR K KRQ + EL L+P
Sbjct: 68 RFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHPLTP---- 123
Query: 278 RLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPLLGFSGALAYPLAAFPAAASV 337
R V VPVL + G P P P APA P+P +S A++ P + + +
Sbjct: 124 RRVAVPVLVRD--------GKPCLGPGPGAPAFPSP------YSAAVS-PYSCYGGYSGA 168
Query: 338 PF 339
P+
Sbjct: 169 PY 170
>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
Length = 284
Score = 89.4 bits (220), Expect = 4e-18
Identities = 82/251 (32%), Positives = 105/251 (41%), Gaps = 41/251 (16%)
Query: 74 GTGPGGEARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTS 133
G G GG+ GA G G GP G+ P + G GG+ +
Sbjct: 36 GLGRGGQGHGEN----GAFSGGYHGASGYGP------AGSLAPLPGSSGVGPGGVIRVPA 85
Query: 134 DRDSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETR 193
R P + G P PGP + P + + AA
Sbjct: 86 HRPLP-----VPPPAGGAPAVPGPSGLGGAGGLAGLTFPWMDSGRRFAKDRLTAALSPFS 140
Query: 194 GGVGVGGG-------RKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQ 246
G +G ++KK RT FSRSQV +LE F ++YL+SAERA LA +L++T+ Q
Sbjct: 141 GTRRIGHPYQNRTPPKRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQ 200
Query: 247 VKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPATLPFPL 306
VK WFQNRR KW+RQ A E E A+R +L H A LP PL
Sbjct: 201 VKTWFQNRRTKWRRQTAEERE--------AERHRAGRLLLHLQQDA---------LPRPL 243
Query: 307 APAAPAPPPPL 317
P P PP PL
Sbjct: 244 RP--PLPPDPL 252
>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
Length = 387
Score = 87.8 bits (216), Expect = 1e-17
Identities = 52/122 (42%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 202 RKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQ 261
+ +K RT FS Q+ QLE +F+ ++YLS +R LAA+L LT+TQVK W+QNRR KWKRQ
Sbjct: 231 KPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQ 290
Query: 262 LAAELE--AASLSPPGAQRLVRVPVLYHE----SPPAAAAAGPPATLPFPLAPAAPAPPP 315
A LE A + + QR+ P YH S + AA A + + PAP P
Sbjct: 291 TAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHP 350
Query: 316 PL 317
L
Sbjct: 351 QL 352
Score = 28.9 bits (63), Expect = 7.1
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 285 LYHESPPAAAAAGPPATLP------FPLAPAAPAPPPP 316
L+H P AA P +L PL P P PPPP
Sbjct: 88 LHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQPPPPPP 125
>gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]
Length = 273
Score = 87.4 bits (215), Expect = 2e-17
Identities = 76/226 (33%), Positives = 105/226 (46%), Gaps = 31/226 (13%)
Query: 88 GPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEM--G 145
GP GP P GP G A + P + Y +P T S E + G
Sbjct: 31 GPEEENEGPEPAKRAGP-LGQGALDAVQSLPLKNPFYDSSDNPYTRWLASTEGLQYSLHG 89
Query: 146 RAEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKK 205
A GA P+ + +++ P +E+ P ET GG G G+K+K
Sbjct: 90 LAAGAPPQ------------DSSSKSPEPSADES------PDNDKETPGGGG-DAGKKRK 130
Query: 206 TRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAE 265
R +FS++Q ++LE F +RYLS+ ER LA+ ++LT TQVKIWFQN R K KR A
Sbjct: 131 RRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAE- 189
Query: 266 LEAASLSPPGAQRLVRVPVLYHESPPA-------AAAAGPPATLPF 304
+ ++P + R V VPVL + P AAA A +PF
Sbjct: 190 -KGMEVTPLPSPRRVAVPVLVRDGKPCHALKAQDLAAATFQAGIPF 234
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 87.4 bits (215), Expect = 2e-17
Identities = 76/221 (34%), Positives = 96/221 (43%), Gaps = 40/221 (18%)
Query: 76 GPGGEARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDR 135
G GG A A G GA G G P GPG P G GGA P G + + +
Sbjct: 58 GGGGSAAATGAGGAGAYGTGG--PGGPGGP--AGGGGACSMGPLT-----GSYNVNMALA 108
Query: 136 DSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGG 195
P G G + GA G ++ A A A A+ L VP+ G
Sbjct: 109 GGPGPGGGGGSSGGAGALSAA-GVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMP--G 165
Query: 196 VGVGGG----------------------------RKKKTRTVFSRSQVFQLESTFDLKRY 227
V G +KKK RT F+R Q+ +LE F ++Y
Sbjct: 166 VNNLTGLTFPWMESNRRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKY 225
Query: 228 LSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEA 268
L+SAERA LA +L++T+ QVK WFQNRR KW+RQ A E EA
Sbjct: 226 LASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREA 266
>gi|31377777 NK2 homeobox 8 [Homo sapiens]
Length = 239
Score = 85.9 bits (211), Expect = 5e-17
Identities = 78/213 (36%), Positives = 96/213 (45%), Gaps = 33/213 (15%)
Query: 153 RGPGPGAVQRE--AAEL-AARGPAAGTEEASELAEVPAAAGETRG---GVGVGGGRKKKT 206
R P P A Q + AA L + RG ++E+S P ++ G ++KK
Sbjct: 28 REPEPRAPQPDPCAAWLDSERGHYPSSDESSLETSPPDSSQRPSARPASPGSDAEKRKKR 87
Query: 207 RTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLA--- 263
R +FS++Q +LE F +RYLS+ ER LA+ L+LT TQVKIWFQN R K KR A
Sbjct: 88 RVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGA 147
Query: 264 ---------AELEAASLSPPGAQRLVRVPVLYHESPPAAAAAG-------PPATLPFPLA 307
AEL AA PG R V VPVL + P G P A
Sbjct: 148 AESPDLAASAELHAA----PGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPA 203
Query: 308 PAAPAPPPPLLGFSGAL----AYPLAAFPAAAS 336
A P P P G AL AY A PA S
Sbjct: 204 AACPLPGYPAFGPGSALGLFPAYQHLASPALVS 236
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 84.7 bits (208), Expect = 1e-16
Identities = 93/336 (27%), Positives = 123/336 (36%), Gaps = 55/336 (16%)
Query: 7 EPGRATPARASSFLIENLLAAEAKGAGRATQGDGSREDEEED----DDDPEDEDAEQARR 62
+P RA A+++ + LAA A G G G G+ +P A++ R
Sbjct: 16 DPPRAASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASSEPPAAPADRLRA 75
Query: 63 RRLQRRRQLLA-----------GTGPGG---------------------EARARALLGPG 90
R L A G G GG A A A G
Sbjct: 76 ESPSPPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAAAAAAAAAAAAG 135
Query: 91 ALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGRAEGA 150
L LG P G G A Y GY + P + +GA
Sbjct: 136 GLALGLHPGGAQG---GAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGA 192
Query: 151 WPRGP------GPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKK 204
P P G G Q + R AG L ++P + + + G+ +
Sbjct: 193 HPAHPADPIKLGAGTFQLDQW---LRASTAGMI----LPKMPDFNSQAQSNLL---GKCR 242
Query: 205 KTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAA 264
+ RT F+ Q+ +LE F L +YLS +R +A SL LTETQVKIWFQNRR KWKR A
Sbjct: 243 RPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKA 302
Query: 265 ELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPA 300
+ +AA + E P A GPPA
Sbjct: 303 KEQAAQEAEKQKGGGGGAGKGGAEEPGAEELLGPPA 338
>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
Length = 291
Score = 84.7 bits (208), Expect = 1e-16
Identities = 40/67 (59%), Positives = 51/67 (76%)
Query: 202 RKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQ 261
++KK RT FSR Q+ +LE F ++YL+SAERA LA SL++T+ QVK WFQNRR KW+RQ
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
Query: 262 LAAELEA 268
A E EA
Sbjct: 225 TAEEREA 231
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 84.3 bits (207), Expect = 1e-16
Identities = 93/312 (29%), Positives = 116/312 (37%), Gaps = 105/312 (33%)
Query: 27 AEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEARARAL 86
A GAG+A+ +GS +EEED +DP RR RL+ R A
Sbjct: 73 AAGPGAGQASPLEGSEAEEEEDAEDP--------RRPRLRERA---------------AR 109
Query: 87 LGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGR 146
L PG R P P G A P GG G SP
Sbjct: 110 LLPGLA----RSPDAPA-------GALASGEPCEDGGGGPVRSP---------------- 142
Query: 147 AEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKT 206
P PG +R E P ++
Sbjct: 143 -----PGSPGSPRPRRRRLEPNCAKP-------------------------------RRA 166
Query: 207 RTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQL---- 262
RT F+ Q+ LE+ F RYLS ER LA SL LTETQVKIWFQNRR KWK+Q
Sbjct: 167 RTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD 226
Query: 263 -AAELEAASLSP-----------PGAQRLVRVPVLYHESPPAAAAAGP--PATLPFPLAP 308
AA++ + P G+ L+ ++ P+ +AA P+ FPL
Sbjct: 227 GAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTA 286
Query: 309 AAPAPP-PPLLG 319
AAP P P LG
Sbjct: 287 AAPGSPFAPFLG 298
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 84.3 bits (207), Expect = 1e-16
Identities = 93/312 (29%), Positives = 116/312 (37%), Gaps = 105/312 (33%)
Query: 27 AEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEARARAL 86
A GAG+A+ +GS +EEED +DP RR RL+ R A
Sbjct: 95 AAGPGAGQASPLEGSEAEEEEDAEDP--------RRPRLRERA---------------AR 131
Query: 87 LGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGR 146
L PG R P P G A P GG G SP
Sbjct: 132 LLPGLA----RSPDAPA-------GALASGEPCEDGGGGPVRSP---------------- 164
Query: 147 AEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKT 206
P PG +R E P ++
Sbjct: 165 -----PGSPGSPRPRRRRLEPNCAKP-------------------------------RRA 188
Query: 207 RTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQL---- 262
RT F+ Q+ LE+ F RYLS ER LA SL LTETQVKIWFQNRR KWK+Q
Sbjct: 189 RTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD 248
Query: 263 -AAELEAASLSP-----------PGAQRLVRVPVLYHESPPAAAAAGP--PATLPFPLAP 308
AA++ + P G+ L+ ++ P+ +AA P+ FPL
Sbjct: 249 GAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTA 308
Query: 309 AAPAPP-PPLLG 319
AAP P P LG
Sbjct: 309 AAPGSPFAPFLG 320
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 84.3 bits (207), Expect = 1e-16
Identities = 93/312 (29%), Positives = 116/312 (37%), Gaps = 105/312 (33%)
Query: 27 AEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEARARAL 86
A GAG+A+ +GS +EEED +DP RR RL+ R A
Sbjct: 95 AAGPGAGQASPLEGSEAEEEEDAEDP--------RRPRLRERA---------------AR 131
Query: 87 LGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGR 146
L PG R P P G A P GG G SP
Sbjct: 132 LLPGLA----RSPDAPA-------GALASGEPCEDGGGGPVRSP---------------- 164
Query: 147 AEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKT 206
P PG +R E P ++
Sbjct: 165 -----PGSPGSPRPRRRRLEPNCAKP-------------------------------RRA 188
Query: 207 RTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQL---- 262
RT F+ Q+ LE+ F RYLS ER LA SL LTETQVKIWFQNRR KWK+Q
Sbjct: 189 RTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD 248
Query: 263 -AAELEAASLSP-----------PGAQRLVRVPVLYHESPPAAAAAGP--PATLPFPLAP 308
AA++ + P G+ L+ ++ P+ +AA P+ FPL
Sbjct: 249 GAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTA 308
Query: 309 AAPAPP-PPLLG 319
AAP P P LG
Sbjct: 309 AAPGSPFAPFLG 320
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 84.3 bits (207), Expect = 1e-16
Identities = 93/312 (29%), Positives = 116/312 (37%), Gaps = 105/312 (33%)
Query: 27 AEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEARARAL 86
A GAG+A+ +GS +EEED +DP RR RL+ R A
Sbjct: 95 AAGPGAGQASPLEGSEAEEEEDAEDP--------RRPRLRERA---------------AR 131
Query: 87 LGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGR 146
L PG R P P G A P GG G SP
Sbjct: 132 LLPGLA----RSPDAPA-------GALASGEPCEDGGGGPVRSP---------------- 164
Query: 147 AEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKT 206
P PG +R E P ++
Sbjct: 165 -----PGSPGSPRPRRRRLEPNCAKP-------------------------------RRA 188
Query: 207 RTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQL---- 262
RT F+ Q+ LE+ F RYLS ER LA SL LTETQVKIWFQNRR KWK+Q
Sbjct: 189 RTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD 248
Query: 263 -AAELEAASLSP-----------PGAQRLVRVPVLYHESPPAAAAAGP--PATLPFPLAP 308
AA++ + P G+ L+ ++ P+ +AA P+ FPL
Sbjct: 249 GAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTA 308
Query: 309 AAPAPP-PPLLG 319
AAP P P LG
Sbjct: 309 AAPGSPFAPFLG 320
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 84.3 bits (207), Expect = 1e-16
Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 158 GAVQREAAELAARGPA--AGTEEASELAEVPAAAGETRGGVGVG-GGRKKKTRTVFSRSQ 214
G + AEL R P G ++ + A +G + + G++K TR FS Q
Sbjct: 188 GRYPKPLAELPGRTPIFWPGVMQSPPWRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQ 247
Query: 215 VFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAA 269
+F LE TF+ +YL+ ERA LA SL +TE+QVK+WFQNRR KW+++ AAE+ A
Sbjct: 248 IFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATA 302
Score = 30.4 bits (67), Expect = 2.5
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 292 AAAAAGPPATLPFPL---APAAPAPPPPLLGFSGALAYPLAAFPAAASVPFLRAQMPG 346
AAAAA PA L L + +P PPPP L FS + AA A P A++PG
Sbjct: 146 AAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPS----AAAVAAVGRYPKPLAELPG 199
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 83.6 bits (205), Expect = 2e-16
Identities = 90/320 (28%), Positives = 121/320 (37%), Gaps = 74/320 (23%)
Query: 27 AEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEARARAL 86
A+ G+G A G G ++ P + L ++ L G G E
Sbjct: 24 AQHSGSGGADGGPGGGPGYQQPPAPPT---------QHLPLQQPQLPHAGGGRE------ 68
Query: 87 LGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHG--------GYGGGLSPDTSDRDSP 138
P A PR P P AA YP AHG GY GG SP +
Sbjct: 69 --PTASYYAPRTAREPAYP-------AAALYP-AHGAADTAYPYGYRGGASPGRPPQPEQ 118
Query: 139 ETGEEMGRAEGAW--------------PRGPGPGAVQR-EAAELAARGPAAGTEEASELA 183
+ G A G PR P A +R EAA PA G+ A L
Sbjct: 119 PPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLL 178
Query: 184 EVPAAAGETRGGVGV-----------------GGGRKKKTRTVFSRSQVFQLESTFDLKR 226
+ +G V GG K++RT ++R QV +LE F R
Sbjct: 179 LADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNR 238
Query: 227 YLSSAERAGLAASLQLTETQVKIWFQNRRNKWK--------RQLAAELEAASLSPPGAQR 278
YL+ R +A +L L+E QVKIWFQNRR KWK + ++ +AS PPG +
Sbjct: 239 YLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQ 298
Query: 279 LVRVPVLYHESPPAAAAAGP 298
+ P L+ P+ + P
Sbjct: 299 -TQSPHLHPHPHPSTSTPVP 317
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 83.6 bits (205), Expect = 2e-16
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 12/132 (9%)
Query: 156 GPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQV 215
GPGA+ +L G EE + P AG T GG+ ++ RT F+ Q+
Sbjct: 225 GPGALLGPKPKLKG-SLGTGAEEGA-----PVTAGVT-----APGGKSRRRRTAFTSEQL 273
Query: 216 FQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPG 275
+LE F K+YLS ER+ +A +L+L+E QVKIWFQNRR KWKR A + + S P
Sbjct: 274 LELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVR 333
Query: 276 AQRLVRVPVLYH 287
++V VP+ H
Sbjct: 334 NPKIV-VPIPVH 344
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 82.4 bits (202), Expect = 5e-16
Identities = 74/237 (31%), Positives = 98/237 (41%), Gaps = 34/237 (14%)
Query: 120 AHGGYGGGLSPD-TSDRDSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEE 178
+ GG GG P S++ P+ + P PG G A+ GP A +
Sbjct: 98 SQGGGGGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGV----PAKKPKGGPNASSSS 153
Query: 179 ASELAEV----------------PAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTF 222
A+ ++ A AGE+ G K+ RT ++ +Q+ +LE F
Sbjct: 154 ATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEF 213
Query: 223 DLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRV 282
RYL R +A L LTE Q+KIWFQNRR K+K+ A+ L P +Q R
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAK---GILHSPASQSPER- 269
Query: 283 PVLYHESPPAAAAAGPPA---TLPFPLAPAAPAPPPPLLGFSGALAYPLAAFPAAAS 336
SPP AAG A LP A AP PP S Y LAA+ A S
Sbjct: 270 ------SPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLS 320
>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
Length = 348
Score = 82.4 bits (202), Expect = 5e-16
Identities = 49/121 (40%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 171 GPAAGTEE--ASELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYL 228
G AA EE L E P ++G G G+ ++ RT F+ Q+ +LE F K+YL
Sbjct: 215 GQAAHKEEDPGHALEETPPSSGAA--GSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYL 272
Query: 229 SSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHE 288
S ER+ +A +L+L+E QVKIWFQNRR KWKR A + + P ++V VP+ H
Sbjct: 273 SLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAGNANSKTGEPSRNPKIV-VPIPVHV 331
Query: 289 S 289
S
Sbjct: 332 S 332
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,590,272
Number of Sequences: 37866
Number of extensions: 1271480
Number of successful extensions: 22068
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 1023
Number of HSP's that attempted gapping in prelim test: 13320
Number of HSP's gapped (non-prelim): 7741
length of query: 348
length of database: 18,247,518
effective HSP length: 103
effective length of query: 245
effective length of database: 14,347,320
effective search space: 3515093400
effective search space used: 3515093400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.