Guide to the Human Genome
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Search of human proteins with 239744401

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744401 PREDICTED: hypothetical protein [Homo sapiens]
         (382 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750092 PREDICTED: hypothetical protein [Homo sapiens]           796   0.0  
gi|239744401 PREDICTED: hypothetical protein [Homo sapiens]           796   0.0  
gi|169202942 PREDICTED: hypothetical protein [Homo sapiens]           489   e-138
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]             34   0.19 
gi|169212138 PREDICTED: similar to hCG2040688 [Homo sapiens]           32   0.73 
gi|169211729 PREDICTED: hypothetical protein [Homo sapiens]            32   0.73 
gi|169210847 PREDICTED: similar to hCG2040688 [Homo sapiens]           32   0.73 
gi|113416171 PREDICTED: hypothetical protein [Homo sapiens]            32   1.2  
gi|169166294 PREDICTED: hypothetical protein [Homo sapiens]            32   1.2  
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]            31   1.6  
gi|38683827 ADAM metallopeptidase with thrombospondin type 1 mot...    31   1.6  
gi|169169054 PREDICTED: hypothetical protein [Homo sapiens]            31   2.1  
gi|169168706 PREDICTED: hypothetical protein [Homo sapiens]            31   2.1  
gi|169169649 PREDICTED: hypothetical protein [Homo sapiens]            31   2.1  
gi|55750053 atrophin-1 [Homo sapiens]                                  31   2.1  
gi|55750041 atrophin-1 [Homo sapiens]                                  31   2.1  
gi|226442791 runt-related transcription factor 2 isoform b [Homo...    30   3.6  
gi|226442783 runt-related transcription factor 2 isoform a [Homo...    30   3.6  
gi|66934969 runt-related transcription factor 2 isoform c [Homo ...    30   3.6  
gi|89276766 trophinin isoform 5 [Homo sapiens]                         30   3.6  
gi|95007030 lines homolog 1 [Homo sapiens]                             30   4.7  
gi|95007028 lines homolog 1 [Homo sapiens]                             30   4.7  
gi|95007024 lines homolog 1 [Homo sapiens]                             30   4.7  
gi|16933557 dachsous 1 precursor [Homo sapiens]                        30   4.7  
gi|46409270 tubulin, alpha 3e [Homo sapiens]                           30   4.7  
gi|95007026 lines homolog 1 [Homo sapiens]                             30   4.7  
gi|239756295 PREDICTED: hypothetical protein [Homo sapiens]            29   6.2  
gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]            29   6.2  
gi|169194755 PREDICTED: hypothetical protein [Homo sapiens]            29   6.2  
gi|169184025 PREDICTED: hypothetical protein [Homo sapiens]            29   6.2  

>gi|239750092 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 382

 Score =  796 bits (2055), Expect = 0.0
 Identities = 382/382 (100%), Positives = 382/382 (100%)

Query: 1   MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
           MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS
Sbjct: 1   MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60

Query: 61  RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
           RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ
Sbjct: 61  RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120

Query: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
           HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL
Sbjct: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180

Query: 181 KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA 240
           KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA
Sbjct: 181 KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA 240

Query: 241 EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 300
           EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC
Sbjct: 241 EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 300

Query: 301 DMTRPCTFTAVAEALSRLAHRVDEAHDEALTDTLTAELTLQEKVPRSTAGPLFQFPKHWH 360
           DMTRPCTFTAVAEALSRLAHRVDEAHDEALTDTLTAELTLQEKVPRSTAGPLFQFPKHWH
Sbjct: 301 DMTRPCTFTAVAEALSRLAHRVDEAHDEALTDTLTAELTLQEKVPRSTAGPLFQFPKHWH 360

Query: 361 KRFWRVNQQVEQGTPKRRRTRK 382
           KRFWRVNQQVEQGTPKRRRTRK
Sbjct: 361 KRFWRVNQQVEQGTPKRRRTRK 382


>gi|239744401 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 382

 Score =  796 bits (2055), Expect = 0.0
 Identities = 382/382 (100%), Positives = 382/382 (100%)

Query: 1   MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
           MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS
Sbjct: 1   MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60

Query: 61  RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
           RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ
Sbjct: 61  RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120

Query: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
           HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL
Sbjct: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180

Query: 181 KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA 240
           KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA
Sbjct: 181 KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA 240

Query: 241 EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 300
           EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC
Sbjct: 241 EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 300

Query: 301 DMTRPCTFTAVAEALSRLAHRVDEAHDEALTDTLTAELTLQEKVPRSTAGPLFQFPKHWH 360
           DMTRPCTFTAVAEALSRLAHRVDEAHDEALTDTLTAELTLQEKVPRSTAGPLFQFPKHWH
Sbjct: 301 DMTRPCTFTAVAEALSRLAHRVDEAHDEALTDTLTAELTLQEKVPRSTAGPLFQFPKHWH 360

Query: 361 KRFWRVNQQVEQGTPKRRRTRK 382
           KRFWRVNQQVEQGTPKRRRTRK
Sbjct: 361 KRFWRVNQQVEQGTPKRRRTRK 382


>gi|169202942 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 293

 Score =  489 bits (1258), Expect = e-138
 Identities = 256/309 (82%), Positives = 261/309 (84%), Gaps = 16/309 (5%)

Query: 1   MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
           MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS
Sbjct: 1   MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60

Query: 61  RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
           RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ
Sbjct: 61  RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120

Query: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
           HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL
Sbjct: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180

Query: 181 KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA 240
           K   R G  A        ++   R +   E PL   A  G          V+  H  +  
Sbjct: 181 K---RPGGIAGGV-----AALLPRAAVHGESPLAGVAALG----LANTLFVQEPHLVV-- 226

Query: 241 EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 300
                TVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC
Sbjct: 227 --KRGTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 284

Query: 301 DMTRPCTFT 309
           DMTRPCTFT
Sbjct: 285 DMTRPCTFT 293


>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
          Length = 2240

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 204 RC--SGPCEHPLRTGAPPGGKKRYCKEARVR--GNHQPIGAEDALRTVPPACVRATPASL 259
           RC  S P  H L+  AP   ++R  + A  R   NH+P+    A  T  P   R  PAS 
Sbjct: 101 RCLFSAPSTHRLQ--APISWRRRDARAANARPGANHRPLLGNVAPPTRGPTGPRPGPASP 158

Query: 260 GSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSICDMTR 304
           G+       VS   R    +  R +RVL   R    LR  C + R
Sbjct: 159 GALALIALRVSDPLR----KALRQTRVLKSRRKPRRLRLQCMLVR 199


>gi|169212138 PREDICTED: similar to hCG2040688 [Homo sapiens]
          Length = 247

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 146 PGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKSWGRSGPAAESCCTRRKSSCWSRC 205
           PG+     H  SR+LLN          +NS+WI++         + S CT   +  W   
Sbjct: 134 PGLKAGAHHTHSRSLLNYDDHCARNLFDNSYWIII---------SISDCTILTNQSWRLL 184

Query: 206 SGPC 209
           S PC
Sbjct: 185 SNPC 188


>gi|169211729 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 247

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 146 PGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKSWGRSGPAAESCCTRRKSSCWSRC 205
           PG+     H  SR+LLN          +NS+WI++         + S CT   +  W   
Sbjct: 134 PGLKAGAHHTRSRSLLNYDDHCARNLFDNSYWIII---------SISDCTILTNQSWRLL 184

Query: 206 SGPC 209
           S PC
Sbjct: 185 SNPC 188


>gi|169210847 PREDICTED: similar to hCG2040688 [Homo sapiens]
          Length = 247

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 146 PGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKSWGRSGPAAESCCTRRKSSCWSRC 205
           PG+     H  SR+LLN          +NS+WI++         + S CT   +  W   
Sbjct: 134 PGLKAGAHHTRSRSLLNYDDHCARNLFDNSYWIII---------SISDCTILTNQSWRLL 184

Query: 206 SGPC 209
           S PC
Sbjct: 185 SNPC 188


>gi|113416171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 265

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 185 RSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKR------YCKEARVRGNHQPI 238
           R  P  +S  T + +     C+ PC      G     + R      +C  ARV  N  P 
Sbjct: 106 RKEPRRQSRATGKSARTRRACASPCRPGRHCGPETARRPRPLAGTTFCGGARVLSNPPPS 165

Query: 239 GAEDALRTVP--PACVRATPASL 259
           G+    R  P  P   RAT ASL
Sbjct: 166 GSGGDARPSPLVPRRCRATSASL 188


>gi|169166294 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 265

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 185 RSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKR------YCKEARVRGNHQPI 238
           R  P  +S  T + +     C+ PC      G     + R      +C  ARV  N  P 
Sbjct: 106 RKEPRRQSRATGKSARTRRACASPCRPGRHCGPETARRPRPLAGTTFCGGARVLSNPPPS 165

Query: 239 GAEDALRTVP--PACVRATPASL 259
           G+    R  P  P   RAT ASL
Sbjct: 166 GSGGDARPSPLVPRRCRATSASL 188


>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1230

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 3/160 (1%)

Query: 139 GLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKSWGRSGPAAESCCTRRK 198
           G   P+      S S   S     ST  ++   S + FW+   +   S P+     +   
Sbjct: 162 GWASPSASWTSPSASCASSSASGASTPSDSGWASPSVFWVSPSTSWASSPSDFGWASTPS 221

Query: 199 SSCWSRCSGPCEHPLRTGAPPGGKKRYCKEAR---VRGNHQPIGAEDALRTVPPACVRAT 255
            S W+  S  C  P  +GA       +   +         +   + D+      A   + 
Sbjct: 222 DSGWASSSASCISPSASGASTSSDSGWASPSASWVSTSTSRASTSSDSGWASSSASWDSI 281

Query: 256 PASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTL 295
            +  G  C S +  SS+  + +A +  GS   S SR STL
Sbjct: 282 TSDSGWVCPSASWASSSASWASAPSDSGSSSPSVSRASTL 321


>gi|38683827 ADAM metallopeptidase with thrombospondin type 1 motif, 7
            preproprotein [Homo sapiens]
          Length = 1686

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 194  CTRRKSSCWSRCSGPCEHPL----------RTGAPPGGKKRYCKEARVRGNHQPIGAEDA 243
            CT+     W +CSGPC   +          +TG P     +   EA    + +P G ED 
Sbjct: 1570 CTQWVVGPWGQCSGPCGGGVQRRLVKCVNTQTGLPEEDSDQCGHEAWPESS-RPCGTEDC 1628

Query: 244  LRTVPPACVR 253
                PP C R
Sbjct: 1629 EPVEPPRCER 1638


>gi|169169054 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 399

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 43  DLNHTGLHGHRVWAAQ---GSRGHHFV----QQQVHEFFVGHKTPQVELQKVAVHLHLLQ 95
           DL+   L G    AAQ    +RG  F+    Q QV    + H+ PQ+    + +H+H   
Sbjct: 237 DLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGH 296

Query: 96  PEAPKGAQPHTLQQRLQADLDDAGQ 120
           P+  +G  P       +A LD A +
Sbjct: 297 PQGQRG--PRRRHSGRRAHLDGAAR 319


>gi|169168706 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 399

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 43  DLNHTGLHGHRVWAAQ---GSRGHHFV----QQQVHEFFVGHKTPQVELQKVAVHLHLLQ 95
           DL+   L G    AAQ    +RG  F+    Q QV    + H+ PQ+    + +H+H   
Sbjct: 237 DLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGH 296

Query: 96  PEAPKGAQPHTLQQRLQADLDDAGQ 120
           P+  +G  P       +A LD A +
Sbjct: 297 PQGQRG--PRRRHSGRRAHLDGAAR 319


>gi|169169649 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 399

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 43  DLNHTGLHGHRVWAAQ---GSRGHHFV----QQQVHEFFVGHKTPQVELQKVAVHLHLLQ 95
           DL+   L G    AAQ    +RG  F+    Q QV    + H+ PQ+    + +H+H   
Sbjct: 237 DLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGH 296

Query: 96  PEAPKGAQPHTLQQRLQADLDDAGQ 120
           P+  +G  P       +A LD A +
Sbjct: 297 PQGQRG--PRRRHSGRRAHLDGAAR 319


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 42/161 (26%), Positives = 54/161 (33%), Gaps = 41/161 (25%)

Query: 60  SRGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAG 119
           S  HH  QQQ  +     +  Q + Q+     H      P GA PH L+          G
Sbjct: 477 STHHHHHQQQQQQ-----QQQQQQQQQQQQQHHGNSGPPPPGAFPHPLE---------GG 522

Query: 120 QHRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWIL 179
              H        SLG+     L+P  PG P  L    S+   +  G N            
Sbjct: 523 SSHHAHPYAMSPSLGS-----LRPYPPG-PAHLPPPHSQVSYSQAGPN------------ 564

Query: 180 LKSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPG 220
                  GP   S  +   SS  S+ S PC HP  +  P G
Sbjct: 565 -------GPPVSS--SSNSSSSTSQGSYPCSHPSPSQGPQG 596


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 42/161 (26%), Positives = 54/161 (33%), Gaps = 41/161 (25%)

Query: 60  SRGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAG 119
           S  HH  QQQ  +     +  Q + Q+     H      P GA PH L+          G
Sbjct: 477 STHHHHHQQQQQQ-----QQQQQQQQQQQQQHHGNSGPPPPGAFPHPLE---------GG 522

Query: 120 QHRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWIL 179
              H        SLG+     L+P  PG P  L    S+   +  G N            
Sbjct: 523 SSHHAHPYAMSPSLGS-----LRPYPPG-PAHLPPPHSQVSYSQAGPN------------ 564

Query: 180 LKSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPG 220
                  GP   S  +   SS  S+ S PC HP  +  P G
Sbjct: 565 -------GPPVSS--SSNSSSSTSQGSYPCSHPSPSQGPQG 596


>gi|226442791 runt-related transcription factor 2 isoform b [Homo
           sapiens]
          Length = 499

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 131 CSLGTAGVGLLQPTLP----GIPGSLSHVGSRTLLNSTGLNTSIRSENSFW 177
           C+  + G  LL P LP    G+    SH  S T+LNS+G     R + S W
Sbjct: 451 CTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSG-----RMDESVW 496


>gi|226442783 runt-related transcription factor 2 isoform a [Homo
           sapiens]
          Length = 521

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 131 CSLGTAGVGLLQPTLP----GIPGSLSHVGSRTLLNSTGLNTSIRSENSFW 177
           C+  + G  LL P LP    G+    SH  S T+LNS+G     R + S W
Sbjct: 473 CTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSG-----RMDESVW 518


>gi|66934969 runt-related transcription factor 2 isoform c [Homo
           sapiens]
          Length = 507

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 131 CSLGTAGVGLLQPTLP----GIPGSLSHVGSRTLLNSTGLNTSIRSENSFW 177
           C+  + G  LL P LP    G+    SH  S T+LNS+G     R + S W
Sbjct: 459 CTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSG-----RMDESVW 504


>gi|89276766 trophinin isoform 5 [Homo sapiens]
          Length = 1431

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 252 VRATPASLGSTCTSMAVVSS----TTRF----MTARTFRGSRVLSQSRVSTLLRSICDMT 303
           V +T  S GS  T+  V SS    +T F     T+  F GS   S S   TL  SIC   
Sbjct: 862 VLSTSTSFGSAPTTSTVFSSALSTSTGFGGILSTSVCFGGSPSSSGSFGGTLSTSICFGG 921

Query: 304 RPCTFTAVAEALS 316
            PCT T     LS
Sbjct: 922 SPCTSTGFGGTLS 934


>gi|95007030 lines homolog 1 [Homo sapiens]
          Length = 757

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 231 VRGNHQPIGAEDALRTVPPACVRATPASLGSTCTSM----AVVSSTTRFMTARTFRGSRV 286
           ++G HQPI    A   V P C++      GS    +     +   TTR ++ +T   ++ 
Sbjct: 55  IQGRHQPISVGVAPIAVAPVCLKTNSQMSGSREVMLLQLTVIKVMTTRILSVKTEFHAKE 114

Query: 287 LSQSRVSTLLRSI-CDMTRPCTFTAVAEALSRLA 319
             +  +  LL S   D    C F    + LS +A
Sbjct: 115 QYRDVIKILLESAKVDSKLICMFQNSDKLLSHMA 148


>gi|95007028 lines homolog 1 [Homo sapiens]
          Length = 757

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 231 VRGNHQPIGAEDALRTVPPACVRATPASLGSTCTSM----AVVSSTTRFMTARTFRGSRV 286
           ++G HQPI    A   V P C++      GS    +     +   TTR ++ +T   ++ 
Sbjct: 55  IQGRHQPISVGVAPIAVAPVCLKTNSQMSGSREVMLLQLTVIKVMTTRILSVKTEFHAKE 114

Query: 287 LSQSRVSTLLRSI-CDMTRPCTFTAVAEALSRLA 319
             +  +  LL S   D    C F    + LS +A
Sbjct: 115 QYRDVIKILLESAKVDSKLICMFQNSDKLLSHMA 148


>gi|95007024 lines homolog 1 [Homo sapiens]
          Length = 757

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 231 VRGNHQPIGAEDALRTVPPACVRATPASLGSTCTSM----AVVSSTTRFMTARTFRGSRV 286
           ++G HQPI    A   V P C++      GS    +     +   TTR ++ +T   ++ 
Sbjct: 55  IQGRHQPISVGVAPIAVAPVCLKTNSQMSGSREVMLLQLTVIKVMTTRILSVKTEFHAKE 114

Query: 287 LSQSRVSTLLRSI-CDMTRPCTFTAVAEALSRLA 319
             +  +  LL S   D    C F    + LS +A
Sbjct: 115 QYRDVIKILLESAKVDSKLICMFQNSDKLLSHMA 148


>gi|16933557 dachsous 1 precursor [Homo sapiens]
          Length = 3298

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 97   EAPKGAQPHTLQQRLQADLDDAGQHRHLQAGTQGCSLGTAGVGLLQPT 144
            E P+     TL  +LQA   DAG + H+   T     GTAG  LL+P+
Sbjct: 1863 EVPEDVPAGTLLLQLQAHDPDAGANGHV---TYYLGAGTAGAFLLEPS 1907


>gi|46409270 tubulin, alpha 3e [Homo sapiens]
          Length = 450

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 247 VPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSICDMTRPC 306
           V P  V A  A++ +  T   V    T F     ++   V+    ++ + R++C ++   
Sbjct: 323 VVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNT- 381

Query: 307 TFTAVAEALSRLAHRVD 323
             TA+AEA +RL H+ D
Sbjct: 382 --TAIAEAWARLVHKFD 396


>gi|95007026 lines homolog 1 [Homo sapiens]
          Length = 757

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 231 VRGNHQPIGAEDALRTVPPACVRATPASLGSTCTSM----AVVSSTTRFMTARTFRGSRV 286
           ++G HQPI    A   V P C++      GS    +     +   TTR ++ +T   ++ 
Sbjct: 55  IQGRHQPISVGVAPIAVAPVCLKTNSQMSGSREVMLLQLTVIKVMTTRILSVKTEFHAKE 114

Query: 287 LSQSRVSTLLRSI-CDMTRPCTFTAVAEALSRLA 319
             +  +  LL S   D    C F    + LS +A
Sbjct: 115 QYRDVIKILLESAKVDSKLICMFQNSDKLLSHMA 148


>gi|239756295 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 129 QGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSE 173
           QGC       GL +PT PG    L H   + L+   G +T ++S+
Sbjct: 7   QGCLFHVPFTGLPEPTAPGKGLDLMHGCCKYLVLKVGFSTQLKSD 51


>gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 173

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 12/57 (21%)

Query: 185 RSGPAA-ESCCTRRKSSCWSRCSGPCEHPLRTGAP-------PGGKKRYCKEARVRG 233
           R  PA    CCT   SSC      P     R GA        PGG++R C  A V G
Sbjct: 104 RGEPAGGRGCCTAEGSSC----GHPWRRERRQGAATRGPSRGPGGERRVCVRASVAG 156


>gi|169194755 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 243

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 208 PCEHPLRT-------GAPPGGKKRYCKEARVRGNHQPIGAEDALRTVPPACVRATPASLG 260
           PC  P++T       G     + + C     RG   P       R +  + V+  PA   
Sbjct: 103 PCCLPMQTVGRLQLLGEERKEEIQACDPDPTRGAQTPALGTPGERLLRQSSVQHQPALSP 162

Query: 261 STCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSI 299
           S C+  AV++ T R+    +F  S  +  +R + L R++
Sbjct: 163 SFCSFAAVLTETLRYHCQGSFAESSTIKAARKTDLHRNL 201


>gi|169184025 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 230

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 4   RPVLTPA-CGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHG 51
           RP+  P  C    P   P C G  G    W + RL +     NH G HG
Sbjct: 70  RPLAHPLPCESVSPCAWPACFGPSGLPQRWPKGRLPSAEQVTNHFGGHG 118


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,165,985
Number of Sequences: 37866
Number of extensions: 853368
Number of successful extensions: 2900
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2885
Number of HSP's gapped (non-prelim): 51
length of query: 382
length of database: 18,247,518
effective HSP length: 104
effective length of query: 278
effective length of database: 14,309,454
effective search space: 3978028212
effective search space used: 3978028212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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