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Search of human proteins with 239744401
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744401 PREDICTED: hypothetical protein [Homo sapiens]
(382 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750092 PREDICTED: hypothetical protein [Homo sapiens] 796 0.0
gi|239744401 PREDICTED: hypothetical protein [Homo sapiens] 796 0.0
gi|169202942 PREDICTED: hypothetical protein [Homo sapiens] 489 e-138
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 34 0.19
gi|169212138 PREDICTED: similar to hCG2040688 [Homo sapiens] 32 0.73
gi|169211729 PREDICTED: hypothetical protein [Homo sapiens] 32 0.73
gi|169210847 PREDICTED: similar to hCG2040688 [Homo sapiens] 32 0.73
gi|113416171 PREDICTED: hypothetical protein [Homo sapiens] 32 1.2
gi|169166294 PREDICTED: hypothetical protein [Homo sapiens] 32 1.2
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 31 1.6
gi|38683827 ADAM metallopeptidase with thrombospondin type 1 mot... 31 1.6
gi|169169054 PREDICTED: hypothetical protein [Homo sapiens] 31 2.1
gi|169168706 PREDICTED: hypothetical protein [Homo sapiens] 31 2.1
gi|169169649 PREDICTED: hypothetical protein [Homo sapiens] 31 2.1
gi|55750053 atrophin-1 [Homo sapiens] 31 2.1
gi|55750041 atrophin-1 [Homo sapiens] 31 2.1
gi|226442791 runt-related transcription factor 2 isoform b [Homo... 30 3.6
gi|226442783 runt-related transcription factor 2 isoform a [Homo... 30 3.6
gi|66934969 runt-related transcription factor 2 isoform c [Homo ... 30 3.6
gi|89276766 trophinin isoform 5 [Homo sapiens] 30 3.6
gi|95007030 lines homolog 1 [Homo sapiens] 30 4.7
gi|95007028 lines homolog 1 [Homo sapiens] 30 4.7
gi|95007024 lines homolog 1 [Homo sapiens] 30 4.7
gi|16933557 dachsous 1 precursor [Homo sapiens] 30 4.7
gi|46409270 tubulin, alpha 3e [Homo sapiens] 30 4.7
gi|95007026 lines homolog 1 [Homo sapiens] 30 4.7
gi|239756295 PREDICTED: hypothetical protein [Homo sapiens] 29 6.2
gi|169201741 PREDICTED: hypothetical protein [Homo sapiens] 29 6.2
gi|169194755 PREDICTED: hypothetical protein [Homo sapiens] 29 6.2
gi|169184025 PREDICTED: hypothetical protein [Homo sapiens] 29 6.2
>gi|239750092 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 796 bits (2055), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS
Sbjct: 1 MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
Query: 61 RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ
Sbjct: 61 RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
Query: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL
Sbjct: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
Query: 181 KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA 240
KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA
Sbjct: 181 KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA 240
Query: 241 EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 300
EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC
Sbjct: 241 EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 300
Query: 301 DMTRPCTFTAVAEALSRLAHRVDEAHDEALTDTLTAELTLQEKVPRSTAGPLFQFPKHWH 360
DMTRPCTFTAVAEALSRLAHRVDEAHDEALTDTLTAELTLQEKVPRSTAGPLFQFPKHWH
Sbjct: 301 DMTRPCTFTAVAEALSRLAHRVDEAHDEALTDTLTAELTLQEKVPRSTAGPLFQFPKHWH 360
Query: 361 KRFWRVNQQVEQGTPKRRRTRK 382
KRFWRVNQQVEQGTPKRRRTRK
Sbjct: 361 KRFWRVNQQVEQGTPKRRRTRK 382
>gi|239744401 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 796 bits (2055), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS
Sbjct: 1 MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
Query: 61 RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ
Sbjct: 61 RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
Query: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL
Sbjct: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
Query: 181 KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA 240
KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA
Sbjct: 181 KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA 240
Query: 241 EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 300
EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC
Sbjct: 241 EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 300
Query: 301 DMTRPCTFTAVAEALSRLAHRVDEAHDEALTDTLTAELTLQEKVPRSTAGPLFQFPKHWH 360
DMTRPCTFTAVAEALSRLAHRVDEAHDEALTDTLTAELTLQEKVPRSTAGPLFQFPKHWH
Sbjct: 301 DMTRPCTFTAVAEALSRLAHRVDEAHDEALTDTLTAELTLQEKVPRSTAGPLFQFPKHWH 360
Query: 361 KRFWRVNQQVEQGTPKRRRTRK 382
KRFWRVNQQVEQGTPKRRRTRK
Sbjct: 361 KRFWRVNQQVEQGTPKRRRTRK 382
>gi|169202942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 293
Score = 489 bits (1258), Expect = e-138
Identities = 256/309 (82%), Positives = 261/309 (84%), Gaps = 16/309 (5%)
Query: 1 MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS
Sbjct: 1 MFIRPVLTPACGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHGHRVWAAQGS 60
Query: 61 RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ
Sbjct: 61 RGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAGQ 120
Query: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL
Sbjct: 121 HRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILL 180
Query: 181 KSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKRYCKEARVRGNHQPIGA 240
K R G A ++ R + E PL A G V+ H +
Sbjct: 181 K---RPGGIAGGV-----AALLPRAAVHGESPLAGVAALG----LANTLFVQEPHLVV-- 226
Query: 241 EDALRTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 300
TVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC
Sbjct: 227 --KRGTVPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSIC 284
Query: 301 DMTRPCTFT 309
DMTRPCTFT
Sbjct: 285 DMTRPCTFT 293
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 34.3 bits (77), Expect = 0.19
Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 204 RC--SGPCEHPLRTGAPPGGKKRYCKEARVR--GNHQPIGAEDALRTVPPACVRATPASL 259
RC S P H L+ AP ++R + A R NH+P+ A T P R PAS
Sbjct: 101 RCLFSAPSTHRLQ--APISWRRRDARAANARPGANHRPLLGNVAPPTRGPTGPRPGPASP 158
Query: 260 GSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSICDMTR 304
G+ VS R + R +RVL R LR C + R
Sbjct: 159 GALALIALRVSDPLR----KALRQTRVLKSRRKPRRLRLQCMLVR 199
>gi|169212138 PREDICTED: similar to hCG2040688 [Homo sapiens]
Length = 247
Score = 32.3 bits (72), Expect = 0.73
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 146 PGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKSWGRSGPAAESCCTRRKSSCWSRC 205
PG+ H SR+LLN +NS+WI++ + S CT + W
Sbjct: 134 PGLKAGAHHTHSRSLLNYDDHCARNLFDNSYWIII---------SISDCTILTNQSWRLL 184
Query: 206 SGPC 209
S PC
Sbjct: 185 SNPC 188
>gi|169211729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 247
Score = 32.3 bits (72), Expect = 0.73
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 146 PGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKSWGRSGPAAESCCTRRKSSCWSRC 205
PG+ H SR+LLN +NS+WI++ + S CT + W
Sbjct: 134 PGLKAGAHHTRSRSLLNYDDHCARNLFDNSYWIII---------SISDCTILTNQSWRLL 184
Query: 206 SGPC 209
S PC
Sbjct: 185 SNPC 188
>gi|169210847 PREDICTED: similar to hCG2040688 [Homo sapiens]
Length = 247
Score = 32.3 bits (72), Expect = 0.73
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 146 PGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKSWGRSGPAAESCCTRRKSSCWSRC 205
PG+ H SR+LLN +NS+WI++ + S CT + W
Sbjct: 134 PGLKAGAHHTRSRSLLNYDDHCARNLFDNSYWIII---------SISDCTILTNQSWRLL 184
Query: 206 SGPC 209
S PC
Sbjct: 185 SNPC 188
>gi|113416171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 31.6 bits (70), Expect = 1.2
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 185 RSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKR------YCKEARVRGNHQPI 238
R P +S T + + C+ PC G + R +C ARV N P
Sbjct: 106 RKEPRRQSRATGKSARTRRACASPCRPGRHCGPETARRPRPLAGTTFCGGARVLSNPPPS 165
Query: 239 GAEDALRTVP--PACVRATPASL 259
G+ R P P RAT ASL
Sbjct: 166 GSGGDARPSPLVPRRCRATSASL 188
>gi|169166294 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 31.6 bits (70), Expect = 1.2
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 185 RSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPGGKKR------YCKEARVRGNHQPI 238
R P +S T + + C+ PC G + R +C ARV N P
Sbjct: 106 RKEPRRQSRATGKSARTRRACASPCRPGRHCGPETARRPRPLAGTTFCGGARVLSNPPPS 165
Query: 239 GAEDALRTVP--PACVRATPASL 259
G+ R P P RAT ASL
Sbjct: 166 GSGGDARPSPLVPRRCRATSASL 188
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 31.2 bits (69), Expect = 1.6
Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 3/160 (1%)
Query: 139 GLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKSWGRSGPAAESCCTRRK 198
G P+ S S S ST ++ S + FW+ + S P+ +
Sbjct: 162 GWASPSASWTSPSASCASSSASGASTPSDSGWASPSVFWVSPSTSWASSPSDFGWASTPS 221
Query: 199 SSCWSRCSGPCEHPLRTGAPPGGKKRYCKEAR---VRGNHQPIGAEDALRTVPPACVRAT 255
S W+ S C P +GA + + + + D+ A +
Sbjct: 222 DSGWASSSASCISPSASGASTSSDSGWASPSASWVSTSTSRASTSSDSGWASSSASWDSI 281
Query: 256 PASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTL 295
+ G C S + SS+ + +A + GS S SR STL
Sbjct: 282 TSDSGWVCPSASWASSSASWASAPSDSGSSSPSVSRASTL 321
>gi|38683827 ADAM metallopeptidase with thrombospondin type 1 motif, 7
preproprotein [Homo sapiens]
Length = 1686
Score = 31.2 bits (69), Expect = 1.6
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 194 CTRRKSSCWSRCSGPCEHPL----------RTGAPPGGKKRYCKEARVRGNHQPIGAEDA 243
CT+ W +CSGPC + +TG P + EA + +P G ED
Sbjct: 1570 CTQWVVGPWGQCSGPCGGGVQRRLVKCVNTQTGLPEEDSDQCGHEAWPESS-RPCGTEDC 1628
Query: 244 LRTVPPACVR 253
PP C R
Sbjct: 1629 EPVEPPRCER 1638
>gi|169169054 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 30.8 bits (68), Expect = 2.1
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 43 DLNHTGLHGHRVWAAQ---GSRGHHFV----QQQVHEFFVGHKTPQVELQKVAVHLHLLQ 95
DL+ L G AAQ +RG F+ Q QV + H+ PQ+ + +H+H
Sbjct: 237 DLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGH 296
Query: 96 PEAPKGAQPHTLQQRLQADLDDAGQ 120
P+ +G P +A LD A +
Sbjct: 297 PQGQRG--PRRRHSGRRAHLDGAAR 319
>gi|169168706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 30.8 bits (68), Expect = 2.1
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 43 DLNHTGLHGHRVWAAQ---GSRGHHFV----QQQVHEFFVGHKTPQVELQKVAVHLHLLQ 95
DL+ L G AAQ +RG F+ Q QV + H+ PQ+ + +H+H
Sbjct: 237 DLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGH 296
Query: 96 PEAPKGAQPHTLQQRLQADLDDAGQ 120
P+ +G P +A LD A +
Sbjct: 297 PQGQRG--PRRRHSGRRAHLDGAAR 319
>gi|169169649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 30.8 bits (68), Expect = 2.1
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 43 DLNHTGLHGHRVWAAQ---GSRGHHFV----QQQVHEFFVGHKTPQVELQKVAVHLHLLQ 95
DL+ L G AAQ +RG F+ Q QV + H+ PQ+ + +H+H
Sbjct: 237 DLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGH 296
Query: 96 PEAPKGAQPHTLQQRLQADLDDAGQ 120
P+ +G P +A LD A +
Sbjct: 297 PQGQRG--PRRRHSGRRAHLDGAAR 319
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 30.8 bits (68), Expect = 2.1
Identities = 42/161 (26%), Positives = 54/161 (33%), Gaps = 41/161 (25%)
Query: 60 SRGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAG 119
S HH QQQ + + Q + Q+ H P GA PH L+ G
Sbjct: 477 STHHHHHQQQQQQ-----QQQQQQQQQQQQQHHGNSGPPPPGAFPHPLE---------GG 522
Query: 120 QHRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWIL 179
H SLG+ L+P PG P L S+ + G N
Sbjct: 523 SSHHAHPYAMSPSLGS-----LRPYPPG-PAHLPPPHSQVSYSQAGPN------------ 564
Query: 180 LKSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPG 220
GP S + SS S+ S PC HP + P G
Sbjct: 565 -------GPPVSS--SSNSSSSTSQGSYPCSHPSPSQGPQG 596
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 30.8 bits (68), Expect = 2.1
Identities = 42/161 (26%), Positives = 54/161 (33%), Gaps = 41/161 (25%)
Query: 60 SRGHHFVQQQVHEFFVGHKTPQVELQKVAVHLHLLQPEAPKGAQPHTLQQRLQADLDDAG 119
S HH QQQ + + Q + Q+ H P GA PH L+ G
Sbjct: 477 STHHHHHQQQQQQ-----QQQQQQQQQQQQQHHGNSGPPPPGAFPHPLE---------GG 522
Query: 120 QHRHLQAGTQGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWIL 179
H SLG+ L+P PG P L S+ + G N
Sbjct: 523 SSHHAHPYAMSPSLGS-----LRPYPPG-PAHLPPPHSQVSYSQAGPN------------ 564
Query: 180 LKSWGRSGPAAESCCTRRKSSCWSRCSGPCEHPLRTGAPPG 220
GP S + SS S+ S PC HP + P G
Sbjct: 565 -------GPPVSS--SSNSSSSTSQGSYPCSHPSPSQGPQG 596
>gi|226442791 runt-related transcription factor 2 isoform b [Homo
sapiens]
Length = 499
Score = 30.0 bits (66), Expect = 3.6
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 131 CSLGTAGVGLLQPTLP----GIPGSLSHVGSRTLLNSTGLNTSIRSENSFW 177
C+ + G LL P LP G+ SH S T+LNS+G R + S W
Sbjct: 451 CTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSG-----RMDESVW 496
>gi|226442783 runt-related transcription factor 2 isoform a [Homo
sapiens]
Length = 521
Score = 30.0 bits (66), Expect = 3.6
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 131 CSLGTAGVGLLQPTLP----GIPGSLSHVGSRTLLNSTGLNTSIRSENSFW 177
C+ + G LL P LP G+ SH S T+LNS+G R + S W
Sbjct: 473 CTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSG-----RMDESVW 518
>gi|66934969 runt-related transcription factor 2 isoform c [Homo
sapiens]
Length = 507
Score = 30.0 bits (66), Expect = 3.6
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 131 CSLGTAGVGLLQPTLP----GIPGSLSHVGSRTLLNSTGLNTSIRSENSFW 177
C+ + G LL P LP G+ SH S T+LNS+G R + S W
Sbjct: 459 CTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSG-----RMDESVW 504
>gi|89276766 trophinin isoform 5 [Homo sapiens]
Length = 1431
Score = 30.0 bits (66), Expect = 3.6
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 252 VRATPASLGSTCTSMAVVSS----TTRF----MTARTFRGSRVLSQSRVSTLLRSICDMT 303
V +T S GS T+ V SS +T F T+ F GS S S TL SIC
Sbjct: 862 VLSTSTSFGSAPTTSTVFSSALSTSTGFGGILSTSVCFGGSPSSSGSFGGTLSTSICFGG 921
Query: 304 RPCTFTAVAEALS 316
PCT T LS
Sbjct: 922 SPCTSTGFGGTLS 934
>gi|95007030 lines homolog 1 [Homo sapiens]
Length = 757
Score = 29.6 bits (65), Expect = 4.7
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 231 VRGNHQPIGAEDALRTVPPACVRATPASLGSTCTSM----AVVSSTTRFMTARTFRGSRV 286
++G HQPI A V P C++ GS + + TTR ++ +T ++
Sbjct: 55 IQGRHQPISVGVAPIAVAPVCLKTNSQMSGSREVMLLQLTVIKVMTTRILSVKTEFHAKE 114
Query: 287 LSQSRVSTLLRSI-CDMTRPCTFTAVAEALSRLA 319
+ + LL S D C F + LS +A
Sbjct: 115 QYRDVIKILLESAKVDSKLICMFQNSDKLLSHMA 148
>gi|95007028 lines homolog 1 [Homo sapiens]
Length = 757
Score = 29.6 bits (65), Expect = 4.7
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 231 VRGNHQPIGAEDALRTVPPACVRATPASLGSTCTSM----AVVSSTTRFMTARTFRGSRV 286
++G HQPI A V P C++ GS + + TTR ++ +T ++
Sbjct: 55 IQGRHQPISVGVAPIAVAPVCLKTNSQMSGSREVMLLQLTVIKVMTTRILSVKTEFHAKE 114
Query: 287 LSQSRVSTLLRSI-CDMTRPCTFTAVAEALSRLA 319
+ + LL S D C F + LS +A
Sbjct: 115 QYRDVIKILLESAKVDSKLICMFQNSDKLLSHMA 148
>gi|95007024 lines homolog 1 [Homo sapiens]
Length = 757
Score = 29.6 bits (65), Expect = 4.7
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 231 VRGNHQPIGAEDALRTVPPACVRATPASLGSTCTSM----AVVSSTTRFMTARTFRGSRV 286
++G HQPI A V P C++ GS + + TTR ++ +T ++
Sbjct: 55 IQGRHQPISVGVAPIAVAPVCLKTNSQMSGSREVMLLQLTVIKVMTTRILSVKTEFHAKE 114
Query: 287 LSQSRVSTLLRSI-CDMTRPCTFTAVAEALSRLA 319
+ + LL S D C F + LS +A
Sbjct: 115 QYRDVIKILLESAKVDSKLICMFQNSDKLLSHMA 148
>gi|16933557 dachsous 1 precursor [Homo sapiens]
Length = 3298
Score = 29.6 bits (65), Expect = 4.7
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 97 EAPKGAQPHTLQQRLQADLDDAGQHRHLQAGTQGCSLGTAGVGLLQPT 144
E P+ TL +LQA DAG + H+ T GTAG LL+P+
Sbjct: 1863 EVPEDVPAGTLLLQLQAHDPDAGANGHV---TYYLGAGTAGAFLLEPS 1907
>gi|46409270 tubulin, alpha 3e [Homo sapiens]
Length = 450
Score = 29.6 bits (65), Expect = 4.7
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 247 VPPACVRATPASLGSTCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSICDMTRPC 306
V P V A A++ + T V T F ++ V+ ++ + R++C ++
Sbjct: 323 VVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNT- 381
Query: 307 TFTAVAEALSRLAHRVD 323
TA+AEA +RL H+ D
Sbjct: 382 --TAIAEAWARLVHKFD 396
>gi|95007026 lines homolog 1 [Homo sapiens]
Length = 757
Score = 29.6 bits (65), Expect = 4.7
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 231 VRGNHQPIGAEDALRTVPPACVRATPASLGSTCTSM----AVVSSTTRFMTARTFRGSRV 286
++G HQPI A V P C++ GS + + TTR ++ +T ++
Sbjct: 55 IQGRHQPISVGVAPIAVAPVCLKTNSQMSGSREVMLLQLTVIKVMTTRILSVKTEFHAKE 114
Query: 287 LSQSRVSTLLRSI-CDMTRPCTFTAVAEALSRLA 319
+ + LL S D C F + LS +A
Sbjct: 115 QYRDVIKILLESAKVDSKLICMFQNSDKLLSHMA 148
>gi|239756295 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 29.3 bits (64), Expect = 6.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 129 QGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSE 173
QGC GL +PT PG L H + L+ G +T ++S+
Sbjct: 7 QGCLFHVPFTGLPEPTAPGKGLDLMHGCCKYLVLKVGFSTQLKSD 51
>gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 29.3 bits (64), Expect = 6.2
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
Query: 185 RSGPAA-ESCCTRRKSSCWSRCSGPCEHPLRTGAP-------PGGKKRYCKEARVRG 233
R PA CCT SSC P R GA PGG++R C A V G
Sbjct: 104 RGEPAGGRGCCTAEGSSC----GHPWRRERRQGAATRGPSRGPGGERRVCVRASVAG 156
>gi|169194755 PREDICTED: hypothetical protein [Homo sapiens]
Length = 243
Score = 29.3 bits (64), Expect = 6.2
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 208 PCEHPLRT-------GAPPGGKKRYCKEARVRGNHQPIGAEDALRTVPPACVRATPASLG 260
PC P++T G + + C RG P R + + V+ PA
Sbjct: 103 PCCLPMQTVGRLQLLGEERKEEIQACDPDPTRGAQTPALGTPGERLLRQSSVQHQPALSP 162
Query: 261 STCTSMAVVSSTTRFMTARTFRGSRVLSQSRVSTLLRSI 299
S C+ AV++ T R+ +F S + +R + L R++
Sbjct: 163 SFCSFAAVLTETLRYHCQGSFAESSTIKAARKTDLHRNL 201
>gi|169184025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 29.3 bits (64), Expect = 6.2
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 4 RPVLTPA-CGEGPPRPDPGCHGVQGQTGAWQRLRLAALADDLNHTGLHG 51
RP+ P C P P C G G W + RL + NH G HG
Sbjct: 70 RPLAHPLPCESVSPCAWPACFGPSGLPQRWPKGRLPSAEQVTNHFGGHG 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,165,985
Number of Sequences: 37866
Number of extensions: 853368
Number of successful extensions: 2900
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2885
Number of HSP's gapped (non-prelim): 51
length of query: 382
length of database: 18,247,518
effective HSP length: 104
effective length of query: 278
effective length of database: 14,309,454
effective search space: 3978028212
effective search space used: 3978028212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.