Guide to the Human Genome
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Name: LINS1 Sequence: fasta or formatted (757aa) NCBI GI: 95007030
Description:

lines homolog 1

Referenced in:

Additional Genes in Development

Other entries for this name:
alt mRNA [757aa] lines homolog 1
alt mRNA [757aa] lines homolog 1
alt mRNA [757aa] lines homolog 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         47           2
 C cysteine            4.0         30           1
 D aspartate           5.4         41           3
 E glutamate           6.1         46           2
 F phenylalanine       5.4         41           2
 G glycine             2.5         19           2
 H histidine           3.2         24           2
 I isoleucine          5.9         45           2
 K lysine              6.9         52           2
 L leucine            12.5         95           3
 M methionine          2.4         18           1
 N asparagine          3.7         28           2
 P proline             3.6         27           2
 Q glutamine           4.8         36           2
 R arginine            3.0         23           1
 S serine              9.4         71           2
 T threonine           5.4         41           2
 V valine              6.1         46           2
 W tryptophan          1.1          8           1
 Y tyrosine            2.5         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lines homolog 1 
LINS1                 1.000   lines homolog 1 
LINS1                 1.000   lines homolog 1 
LINS1                 1.000   lines homolog 1 
C5                    0.005   complement component 5 preproprotein 
CSF1                  0.005   colony stimulating factor 1 isoform a precursor [Hom...
CSF1                  0.005   colony stimulating factor 1 isoform b precursor [Hom...
CSF1                  0.005   colony stimulating factor 1 isoform a precursor [Hom...
APC                   0.004   adenomatous polyposis coli 
APC                   0.004   adenomatous polyposis coli 
APC                   0.004   adenomatous polyposis coli 
VLDLR                 0.004   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.004   very low density lipoprotein receptor isoform a [Hom...
MED1                  0.004   mediator complex subunit 1 
ABCF3                 0.004   ATP-binding cassette, sub-family F (GCN20), member ...
TIAM1                 0.003   T-cell lymphoma invasion and metastasis 1 
SPEN                  0.003   spen homolog, transcriptional regulator 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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