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Search of human proteins with 239744278
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744278 PREDICTED: hypothetical protein XP_002343110 [Homo
sapiens]
(387 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744278 PREDICTED: hypothetical protein XP_002343110 [Homo ... 804 0.0
gi|239755473 PREDICTED: hypothetical protein [Homo sapiens] 800 0.0
gi|239749968 PREDICTED: hypothetical protein XP_002347245 [Homo ... 800 0.0
gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens] 33 0.33
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 32 0.97
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 31 1.7
gi|45331217 zinc finger protein 526 [Homo sapiens] 31 1.7
gi|239756319 PREDICTED: hypothetical protein [Homo sapiens] 31 2.2
gi|239750846 PREDICTED: hypothetical protein [Homo sapiens] 31 2.2
gi|239745208 PREDICTED: hypothetical protein XP_002343389 [Homo ... 31 2.2
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 30 2.8
gi|169177938 PREDICTED: similar to chromosome 9 open reading fra... 30 3.7
gi|167466201 WAS protein family homolog 1 [Homo sapiens] 30 3.7
gi|157042792 coiled-coil domain containing 64B [Homo sapiens] 30 3.7
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 30 4.8
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is... 30 4.8
gi|169790958 methionine synthase reductase isoform 1 [Homo sapiens] 29 6.3
gi|169790956 methionine synthase reductase isoform 2 [Homo sapiens] 29 6.3
gi|239743666 PREDICTED: hypothetical protein XP_002342940 isofor... 29 6.3
gi|239743664 PREDICTED: hypothetical protein XP_002342939 isofor... 29 6.3
gi|90193619 nuclear matrix transcription factor 4 isoform c [Hom... 29 8.2
gi|90193617 nuclear matrix transcription factor 4 isoform b [Hom... 29 8.2
gi|90193615 nuclear matrix transcription factor 4 isoform b [Hom... 29 8.2
gi|90193613 nuclear matrix transcription factor 4 isoform a [Hom... 29 8.2
gi|90193611 nuclear matrix transcription factor 4 isoform a [Hom... 29 8.2
gi|36054194 nuclear matrix transcription factor 4 isoform a [Hom... 29 8.2
gi|209180475 nuclear matrix transcription factor 4 isoform d [Ho... 29 8.2
gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo ... 29 8.2
gi|31881785 Hermansky-Pudlak syndrome-6 [Homo sapiens] 29 8.2
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 29 8.2
>gi|239744278 PREDICTED: hypothetical protein XP_002343110 [Homo
sapiens]
Length = 387
Score = 804 bits (2076), Expect = 0.0
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MELLQSRLPWKDPCPLHLLYPNCPQYIAGQADLRVIRGGTNEDTGSPTLTSCGHKEQGQQ 60
MELLQSRLPWKDPCPLHLLYPNCPQYIAGQADLRVIRGGTNEDTGSPTLTSCGHKEQGQQ
Sbjct: 1 MELLQSRLPWKDPCPLHLLYPNCPQYIAGQADLRVIRGGTNEDTGSPTLTSCGHKEQGQQ 60
Query: 61 RHAKAERWIYFGTRHKHRGGRQHQPSGYTLHLEQSFFGSPRSPGIFLGVLRRLWLQRGLQ 120
RHAKAERWIYFGTRHKHRGGRQHQPSGYTLHLEQSFFGSPRSPGIFLGVLRRLWLQRGLQ
Sbjct: 61 RHAKAERWIYFGTRHKHRGGRQHQPSGYTLHLEQSFFGSPRSPGIFLGVLRRLWLQRGLQ 120
Query: 121 RRLGFRLGFSAPARPKARRLDRGGRWRCRAFPARKGPSEALYLLQSGAPQPLGPGLHRLL 180
RRLGFRLGFSAPARPKARRLDRGGRWRCRAFPARKGPSEALYLLQSGAPQPLGPGLHRLL
Sbjct: 121 RRLGFRLGFSAPARPKARRLDRGGRWRCRAFPARKGPSEALYLLQSGAPQPLGPGLHRLL 180
Query: 181 VRALSNFGLQLLWAQLGLVRRAQGLWCLLESAGWDFTLLLHVTDTALILAAPYPQQPETH 240
VRALSNFGLQLLWAQLGLVRRAQGLWCLLESAGWDFTLLLHVTDTALILAAPYPQQPETH
Sbjct: 181 VRALSNFGLQLLWAQLGLVRRAQGLWCLLESAGWDFTLLLHVTDTALILAAPYPQQPETH 240
Query: 241 SLITQGKPFTSAARVTDLEEQNVELPARHQQPVVGLQPLHLGCAAHRALLGGVGVRAHAL 300
SLITQGKPFTSAARVTDLEEQNVELPARHQQPVVGLQPLHLGCAAHRALLGGVGVRAHAL
Sbjct: 241 SLITQGKPFTSAARVTDLEEQNVELPARHQQPVVGLQPLHLGCAAHRALLGGVGVRAHAL 300
Query: 301 RLGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGH 360
RLGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGH
Sbjct: 301 RLGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGH 360
Query: 361 HRHGVHGTPRRRLGHRPPLQRTLPHDP 387
HRHGVHGTPRRRLGHRPPLQRTLPHDP
Sbjct: 361 HRHGVHGTPRRRLGHRPPLQRTLPHDP 387
>gi|239755473 PREDICTED: hypothetical protein [Homo sapiens]
Length = 387
Score = 800 bits (2067), Expect = 0.0
Identities = 386/387 (99%), Positives = 386/387 (99%)
Query: 1 MELLQSRLPWKDPCPLHLLYPNCPQYIAGQADLRVIRGGTNEDTGSPTLTSCGHKEQGQQ 60
MELLQSRLPWKDPCPLHLLYPNCPQYIAGQADLRVIRGGTNEDTGSPTLTSCGHKEQGQQ
Sbjct: 1 MELLQSRLPWKDPCPLHLLYPNCPQYIAGQADLRVIRGGTNEDTGSPTLTSCGHKEQGQQ 60
Query: 61 RHAKAERWIYFGTRHKHRGGRQHQPSGYTLHLEQSFFGSPRSPGIFLGVLRRLWLQRGLQ 120
RHAKAERWIYFGTRHKHRGGRQHQPSGYTLHLEQSFFGSPRSPGIFLGVLRRLWLQRGLQ
Sbjct: 61 RHAKAERWIYFGTRHKHRGGRQHQPSGYTLHLEQSFFGSPRSPGIFLGVLRRLWLQRGLQ 120
Query: 121 RRLGFRLGFSAPARPKARRLDRGGRWRCRAFPARKGPSEALYLLQSGAPQPLGPGLHRLL 180
RRLGFRLGFSAPARPKARRLDRGGRWRCRAFPARKGPSEALYLLQSGAPQPLGPGLHRLL
Sbjct: 121 RRLGFRLGFSAPARPKARRLDRGGRWRCRAFPARKGPSEALYLLQSGAPQPLGPGLHRLL 180
Query: 181 VRALSNFGLQLLWAQLGLVRRAQGLWCLLESAGWDFTLLLHVTDTALILAAPYPQQPETH 240
VRALSNFGLQLLWAQLGLVRRAQGLWCLLESAGWDFTLLLHVTDTALILAAPYPQQPETH
Sbjct: 181 VRALSNFGLQLLWAQLGLVRRAQGLWCLLESAGWDFTLLLHVTDTALILAAPYPQQPETH 240
Query: 241 SLITQGKPFTSAARVTDLEEQNVELPARHQQPVVGLQPLHLGCAAHRALLGGVGVRAHAL 300
SLITQGKPFTSAARVTDLEEQNVELPARHQQPVVGLQPLHLGCAAHRALLGGVGVRAHAL
Sbjct: 241 SLITQGKPFTSAARVTDLEEQNVELPARHQQPVVGLQPLHLGCAAHRALLGGVGVRAHAL 300
Query: 301 RLGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGH 360
RLGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGH
Sbjct: 301 RLGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGH 360
Query: 361 HRHGVHGTPRRRLGHRPPLQRTLPHDP 387
HRHGVHGTPRRRLGHRP LQRTLPHDP
Sbjct: 361 HRHGVHGTPRRRLGHRPRLQRTLPHDP 387
>gi|239749968 PREDICTED: hypothetical protein XP_002347245 [Homo
sapiens]
Length = 387
Score = 800 bits (2067), Expect = 0.0
Identities = 386/387 (99%), Positives = 386/387 (99%)
Query: 1 MELLQSRLPWKDPCPLHLLYPNCPQYIAGQADLRVIRGGTNEDTGSPTLTSCGHKEQGQQ 60
MELLQSRLPWKDPCPLHLLYPNCPQYIAGQADLRVIRGGTNEDTGSPTLTSCGHKEQGQQ
Sbjct: 1 MELLQSRLPWKDPCPLHLLYPNCPQYIAGQADLRVIRGGTNEDTGSPTLTSCGHKEQGQQ 60
Query: 61 RHAKAERWIYFGTRHKHRGGRQHQPSGYTLHLEQSFFGSPRSPGIFLGVLRRLWLQRGLQ 120
RHAKAERWIYFGTRHKHRGGRQHQPSGYTLHLEQSFFGSPRSPGIFLGVLRRLWLQRGLQ
Sbjct: 61 RHAKAERWIYFGTRHKHRGGRQHQPSGYTLHLEQSFFGSPRSPGIFLGVLRRLWLQRGLQ 120
Query: 121 RRLGFRLGFSAPARPKARRLDRGGRWRCRAFPARKGPSEALYLLQSGAPQPLGPGLHRLL 180
RRLGFRLGFSAPARPKARRLDRGGRWRCRAFPARKGPSEALYLLQSGAPQPLGPGLHRLL
Sbjct: 121 RRLGFRLGFSAPARPKARRLDRGGRWRCRAFPARKGPSEALYLLQSGAPQPLGPGLHRLL 180
Query: 181 VRALSNFGLQLLWAQLGLVRRAQGLWCLLESAGWDFTLLLHVTDTALILAAPYPQQPETH 240
VRALSNFGLQLLWAQLGLVRRAQGLWCLLESAGWDFTLLLHVTDTALILAAPYPQQPETH
Sbjct: 181 VRALSNFGLQLLWAQLGLVRRAQGLWCLLESAGWDFTLLLHVTDTALILAAPYPQQPETH 240
Query: 241 SLITQGKPFTSAARVTDLEEQNVELPARHQQPVVGLQPLHLGCAAHRALLGGVGVRAHAL 300
SLITQGKPFTSAARVTDLEEQNVELPARHQQPVVGLQPLHLGCAAHRALLGGVGVRAHAL
Sbjct: 241 SLITQGKPFTSAARVTDLEEQNVELPARHQQPVVGLQPLHLGCAAHRALLGGVGVRAHAL 300
Query: 301 RLGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGH 360
RLGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGH
Sbjct: 301 RLGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGH 360
Query: 361 HRHGVHGTPRRRLGHRPPLQRTLPHDP 387
HRHGVHGTPRRRLGHRP LQRTLPHDP
Sbjct: 361 HRHGVHGTPRRRLGHRPRLQRTLPHDP 387
>gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]
Length = 1586
Score = 33.5 bits (75), Expect = 0.33
Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 314 VVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGHHRHGVHGTP 369
VVAA A AA AA G Q LP A LP+ Q G+ + H HGVHG P
Sbjct: 36 VVAA---AAAAAVAAQGVPQHLLPPFHAPLPIDMRHQE-GRYHYEPHSVHGVHGPP 87
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 32.0 bits (71), Expect = 0.97
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 26/78 (33%)
Query: 320 SAQAALDAAH-----GPCQASLPSSQASLPLPQSLQHGGQLLQQGHHRHGVHGTPR---- 370
+A+A+L A+H GP P+ LP P SL HH H +HG+P+
Sbjct: 442 TARASLAASHSNLLLGP--GGPPTPLRGLPPPSSLH--------AHHHHALHGSPQPAWM 491
Query: 371 -------RRLGHRPPLQR 381
L RPP QR
Sbjct: 492 SDAGGGGGTLARRPPFQR 509
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 31.2 bits (69), Expect = 1.7
Identities = 37/168 (22%), Positives = 53/168 (31%), Gaps = 32/168 (19%)
Query: 230 AAPYPQQPETHSLITQGK----PFTSAARVTDLEEQNVELPARHQQPVVGLQPLHLGCAA 285
A P P THS + + P S + E++ E PA P P GC
Sbjct: 6806 AKSLPPSPVTHSPLLHPRGFLRPSASLPEEAEASERSTEAPAPPASPEGAGPPAAQGCVP 6865
Query: 286 HRALLGGV----------------GVRAHALRLGQQLRQGVAGGVVAATQS--------A 321
+++ + G R H R L+ G G + +
Sbjct: 6866 RHSVIRSLFYHQAGESPEHGALAPGSRRHPARRRHLLKGGYIAGALPGLREPLMEHRVLE 6925
Query: 322 QAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGHHRHGVHGTP 369
+ A A PS + +L LP S H L GH H +P
Sbjct: 6926 EEAAREEQATLLAKAPSFETALRLPASGTH----LAPGHSHSLEHDSP 6969
>gi|45331217 zinc finger protein 526 [Homo sapiens]
Length = 670
Score = 31.2 bits (69), Expect = 1.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 337 PSSQASLPLPQSLQHGGQLLQQGHHRHGVHGTPRRR 372
P+ A LP PQ + + HR VHG P RR
Sbjct: 436 PAPPAQLPCPQCSKSFASASRLSRHRRAVHGPPERR 471
>gi|239756319 PREDICTED: hypothetical protein [Homo sapiens]
Length = 463
Score = 30.8 bits (68), Expect = 2.2
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 282 GCAAHRALLG-GVGVRAHALRLGQQLRQGVAGGVVAATQS-AQAALDAAHGPCQASLPSS 339
G R L G G G + A R+ Q+L++ G VVA +D A G +
Sbjct: 90 GHGGRRGLNGHGDGGQRLARRVAQRLQRHAVGAVVATRHGDGGGRVDHAGGAIHVWPAGA 149
Query: 340 QASLPLPQSLQHGGQLLQQ----GHHRHGVHGTPRRRL 373
Q + HG QL+ + GH HG G P R L
Sbjct: 150 QRAA-------HGSQLVGERVGSGHRLHGGEGQPPRHL 180
>gi|239750846 PREDICTED: hypothetical protein [Homo sapiens]
Length = 463
Score = 30.8 bits (68), Expect = 2.2
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 282 GCAAHRALLG-GVGVRAHALRLGQQLRQGVAGGVVAATQS-AQAALDAAHGPCQASLPSS 339
G R L G G G + A R+ Q+L++ G VVA +D A G +
Sbjct: 90 GHGGRRGLNGHGDGGQRLARRVAQRLQRHAVGAVVATRHGDGGGRVDHAGGAIHVWPAGA 149
Query: 340 QASLPLPQSLQHGGQLLQQ----GHHRHGVHGTPRRRL 373
Q + HG QL+ + GH HG G P R L
Sbjct: 150 QRAA-------HGSQLVGERVGSGHRLHGGEGQPPRHL 180
>gi|239745208 PREDICTED: hypothetical protein XP_002343389 [Homo
sapiens]
Length = 463
Score = 30.8 bits (68), Expect = 2.2
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 282 GCAAHRALLG-GVGVRAHALRLGQQLRQGVAGGVVAATQS-AQAALDAAHGPCQASLPSS 339
G R L G G G + A R+ Q+L++ G VVA +D A G +
Sbjct: 90 GHGGRRGLNGHGDGGQRLARRVAQRLQRHAVGAVVATRHGDGGGRVDHAGGAIHVWPAGA 149
Query: 340 QASLPLPQSLQHGGQLLQQ----GHHRHGVHGTPRRRL 373
Q + HG QL+ + GH HG G P R L
Sbjct: 150 QRAA-------HGSQLVGERVGSGHRLHGGEGQPPRHL 180
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 30.4 bits (67), Expect = 2.8
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 299 ALRLGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSS--QASLPLPQSLQHGGQ-- 354
A +L Q L+ AA A AA A GP +P S +A+ P L+ +
Sbjct: 32 ARQLLQTLQAAEGEAAAAAGAGAGAAAAGAEGPGSPGVPGSPPEAASEPPTGLRFSPEQV 91
Query: 355 ------LLQQGHHRHGVHGTPRRRLGHRPPLQRTLPHDP 387
LLQ GH G R LG PP +R DP
Sbjct: 92 ACVCEALLQAGH-----AGRLSRFLGALPPAERLRGSDP 125
>gi|169177938 PREDICTED: similar to chromosome 9 open reading frame
147 [Homo sapiens]
Length = 208
Score = 30.0 bits (66), Expect = 3.7
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 294 GVRAHALRLGQQLRQGVAGGVVA---ATQSAQAALDAAHGPCQ-----ASLPSSQASLPL 345
G + HALRL LR + GG A T +A L A+H + A+ + A L
Sbjct: 11 GRQPHALRLQPPLRPELPGGGAARGRRTGAATGGLCASHPQARRCRRAAARVPALAPASL 70
Query: 346 PQSLQHGGQLLQQGHHRHGVHGTPRRRLGHRPPLQRT 382
P+ G + H + V G R+ PP RT
Sbjct: 71 PREETKGSR-----HRKRAVVGETHRKCVTTPPTART 102
>gi|167466201 WAS protein family homolog 1 [Homo sapiens]
Length = 465
Score = 30.0 bits (66), Expect = 3.7
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 321 AQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGHHRHGVHGTPRRRL--GHRPP 378
AQA ++ G +A S A P P+ LQ G + G G+ PR R+ HRP
Sbjct: 72 AQAKIEKIKGSKKAIKVFSSAKYPAPERLQEYGSIF-TGAQDPGLQRRPRHRIQSKHRPL 130
Query: 379 LQRTL 383
+R L
Sbjct: 131 DERAL 135
>gi|157042792 coiled-coil domain containing 64B [Homo sapiens]
Length = 508
Score = 30.0 bits (66), Expect = 3.7
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 300 LRLGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQ 357
LRL QQL Q Q Q LDA G CQA + +SLQ Q+LQ
Sbjct: 158 LRLSQQLAQASQ-----TEQELQRELDALRGQCQAQALAGAELRTRLESLQGENQMLQ 210
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 29.6 bits (65), Expect = 4.8
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 231 APYPQQPETHSLITQGKPFTSAARVTDLEEQNVELPARHQQPVVGLQPLHLGCAAHRALL 290
+P PE+ L+TQ S R+ + E +L R Q L+ L + C A +
Sbjct: 59 SPGTSTPESKVLLTQADALASRGRIREALEVYRQLSERQQLVAEQLEQL-VRCLAEKVPQ 117
Query: 291 GGVGVRAHALRLGQQLRQGVAGGVVAATQSAQAALDAA 328
G AL A G VAA ++ AA AA
Sbjct: 118 G------EALAPAPPDEGSTASGTVAAEETGAAAAAAA 149
>gi|37622896 LON peptidase N-terminal domain and ring finger 3
isoform 2 [Homo sapiens]
Length = 718
Score = 29.6 bits (65), Expect = 4.8
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 231 APYPQQPETHSLITQGKPFTSAARVTDLEEQNVELPARHQQPVVGLQPLHLGCAAHRALL 290
+P PE+ L+TQ S R+ + E +L R Q L+ L + C A +
Sbjct: 59 SPGTSTPESKVLLTQADALASRGRIREALEVYRQLSERQQLVAEQLEQL-VRCLAEKVPQ 117
Query: 291 GGVGVRAHALRLGQQLRQGVAGGVVAATQSAQAALDAA 328
G AL A G VAA ++ AA AA
Sbjct: 118 G------EALAPAPPDEGSTASGTVAAEETGAAAAAAA 149
>gi|169790958 methionine synthase reductase isoform 1 [Homo sapiens]
Length = 698
Score = 29.3 bits (64), Expect = 6.3
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 46 SPTLTSCGHKEQGQQRHAKAE---RWIYFGTRHKHRGG------RQHQPSGYTLHLEQSF 96
+P + H+E+ Q++H W++FG RHK R R G HL+ SF
Sbjct: 550 APFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSF 609
>gi|169790956 methionine synthase reductase isoform 2 [Homo sapiens]
Length = 725
Score = 29.3 bits (64), Expect = 6.3
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 46 SPTLTSCGHKEQGQQRHAKAE---RWIYFGTRHKHRGG------RQHQPSGYTLHLEQSF 96
+P + H+E+ Q++H W++FG RHK R R G HL+ SF
Sbjct: 577 APFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSF 636
>gi|239743666 PREDICTED: hypothetical protein XP_002342940 isoform 2
[Homo sapiens]
Length = 465
Score = 29.3 bits (64), Expect = 6.3
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 301 RLGQQLRQGVAG--GVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQ 358
R+ QQ+ Q + + AQA ++ G +A S A P P LQ G +
Sbjct: 50 RISQQVEQSRSQVQAIGEKVSLAQAKIEKIKGSKKAIKVFSSAKYPAPGRLQEYGSIF-T 108
Query: 359 GHHRHGVHGTPRRRL--GHRPPLQRTL 383
G G+ PR R+ HRP +R L
Sbjct: 109 GAQDPGLQRRPRHRIQSKHRPLDERAL 135
>gi|239743664 PREDICTED: hypothetical protein XP_002342939 isoform 1
[Homo sapiens]
Length = 482
Score = 29.3 bits (64), Expect = 6.3
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 301 RLGQQLRQGVAG--GVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQ 358
R+ QQ+ Q + + AQA ++ G +A S A P P LQ G +
Sbjct: 64 RISQQVEQSRSQVQAIGEKVSLAQAKIEKIKGSKKAIKVFSSAKYPAPGRLQEYGSIF-T 122
Query: 359 GHHRHGVHGTPRRRL--GHRPPLQRTL 383
G G+ PR R+ HRP +R L
Sbjct: 123 GAQDPGLQRRPRHRIQSKHRPLDERAL 149
>gi|90193619 nuclear matrix transcription factor 4 isoform c [Homo
sapiens]
Length = 461
Score = 28.9 bits (63), Expect = 8.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Query: 302 LGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQ 358
L QQ++ A VA Q+ A A QA +SQAS Q Q Q QQ
Sbjct: 344 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQ 400
>gi|90193617 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 28.9 bits (63), Expect = 8.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Query: 302 LGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQ 358
L QQ++ A VA Q+ A A QA +SQAS Q Q Q QQ
Sbjct: 383 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQ 439
>gi|90193615 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 28.9 bits (63), Expect = 8.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Query: 302 LGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQ 358
L QQ++ A VA Q+ A A QA +SQAS Q Q Q QQ
Sbjct: 383 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQ 439
>gi|90193613 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 28.9 bits (63), Expect = 8.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Query: 302 LGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQ 358
L QQ++ A VA Q+ A A QA +SQAS Q Q Q QQ
Sbjct: 399 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQ 455
>gi|90193611 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 28.9 bits (63), Expect = 8.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Query: 302 LGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQ 358
L QQ++ A VA Q+ A A QA +SQAS Q Q Q QQ
Sbjct: 399 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQ 455
>gi|36054194 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 28.9 bits (63), Expect = 8.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Query: 302 LGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQ 358
L QQ++ A VA Q+ A A QA +SQAS Q Q Q QQ
Sbjct: 399 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQ 455
>gi|209180475 nuclear matrix transcription factor 4 isoform d [Homo
sapiens]
Length = 577
Score = 28.9 bits (63), Expect = 8.2
Identities = 20/57 (35%), Positives = 24/57 (42%)
Query: 302 LGQQLRQGVAGGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQ 358
L QQ++ A VA Q+ A A QA +SQAS Q Q Q QQ
Sbjct: 460 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQ 516
>gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo
sapiens]
Length = 262
Score = 28.9 bits (63), Expect = 8.2
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 301 RLGQQLRQGVA----GGVVAATQSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLL 356
R + R+GV GG++AA Q+A+ + A A ++Q S G LL
Sbjct: 55 RRSGEAREGVCSRHCGGLMAAGQAARTPVPDADRRQSAVTDATQRPAAAESSPVWTG-LL 113
Query: 357 QQGHHRHGVHGTPRRRL 373
Q+G H G G RRL
Sbjct: 114 QRGPHDRGACGNTARRL 130
>gi|31881785 Hermansky-Pudlak syndrome-6 [Homo sapiens]
Length = 775
Score = 28.9 bits (63), Expect = 8.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 138 RRLDRGGRWRCRAFPARKGPSEALYLLQSGAPQPLGP 174
RRLD CR P P+E L LL++ P +GP
Sbjct: 682 RRLDAHLPLLCRLCPPELAPAELLLLLRTYLPDEVGP 718
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 28.9 bits (63), Expect = 8.2
Identities = 45/188 (23%), Positives = 65/188 (34%), Gaps = 41/188 (21%)
Query: 220 LHVTDTALILAAPYPQQPETHSLITQGKPFTSAARVTDLEEQNVELPARHQQPVVGLQPL 279
L +D A + + +P + Q +PFT QP VG+ L
Sbjct: 659 LRGSDPATLYGSSGVPEPHPGEPVQQRQPFT-------------------MQPPVGINSL 699
Query: 280 H---LGCAAHRALLGGV------GVRAHALRLGQQLRQGVAGGVVAATQSAQAALDAAHG 330
LG + + GG+ G +L+LGQ G + A Q + HG
Sbjct: 700 RGPRLGTPEEKQMCGGLTHLSNMGPHPGSLQLGQISGPSQDGSMYAPAQFQPGFIPPRHG 759
Query: 331 PCQASLPSSQASLPLPQS-LQHGGQLLQQGHHR--HGVHGTPRR---------RLGHRPP 378
A P S +P S + + L + H +G HG + LG P
Sbjct: 760 GAPARPPDFPESSEIPPSHMYRSYKYLNRVHSAVWNGNHGATNQGPLGPDEKPHLGPGPS 819
Query: 379 LQ-RTLPH 385
Q RTL H
Sbjct: 820 HQPRTLGH 827
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,807,354
Number of Sequences: 37866
Number of extensions: 931887
Number of successful extensions: 2453
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2427
Number of HSP's gapped (non-prelim): 36
length of query: 387
length of database: 18,247,518
effective HSP length: 104
effective length of query: 283
effective length of database: 14,309,454
effective search space: 4049575482
effective search space used: 4049575482
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.