Guide to the Human Genome
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Name: LOC100292936 Sequence: fasta or formatted (387aa) NCBI GI: 239755473
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         36           2
 C cysteine            1.8          7           1
 D aspartate           2.3          9           1
 E glutamate           2.8         11           2
 F phenylalanine       2.6         10           2
 G glycine            11.1         43           2
 H histidine           5.7         22           2
 I isoleucine          1.6          6           1
 K lysine              1.8          7           1
 L leucine            15.5         60           3
 M methionine          0.3          1           1
 N asparagine          1.0          4           1
 P proline             8.0         31           1
 Q glutamine           9.3         36           2
 R arginine           10.3         40           3
 S serine              5.2         20           2
 T threonine           4.1         16           1
 V valine              3.9         15           2
 W tryptophan          1.8          7           1
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290616          1.000   PREDICTED: hypothetical protein XP_002347245 
LOC100288128          0.996   PREDICTED: hypothetical protein XP_002343110 
GLI2                  0.010   GLI-Kruppel family member GLI2 
OBSCN                 0.008   obscurin, cytoskeletal calmodulin and titin-interac...
ZNF526                0.008   zinc finger protein 526 
SYNPO2L               0.008   synaptopodin 2-like isoform a 
SYNPO2L               0.008   synaptopodin 2-like isoform b 
LOC100293316          0.008   PREDICTED: hypothetical protein 
LOC100287115          0.008   PREDICTED: hypothetical protein 
LOC100287115          0.008   PREDICTED: hypothetical protein XP_002343389 
WASH1                 0.006   WAS protein family homolog 1 
CCDC64B               0.006   coiled-coil domain containing 64B 
LOC100287171          0.006   PREDICTED: hypothetical protein XP_002342940 isofor...
LOC100287171          0.006   PREDICTED: hypothetical protein XP_002342939 isofor...
LONRF3                0.006   LON peptidase N-terminal domain and ring finger 3 is...
C10orf140             0.006   hypothetical protein LOC387640 
LONRF3                0.006   LON peptidase N-terminal domain and ring finger 3 is...
MTRR                  0.005   methionine synthase reductase isoform 1 
MTRR                  0.005   methionine synthase reductase isoform 2 
CECR2                 0.005   cat eye syndrome chromosome region, candidate 2 [Ho...
LOC729956             0.005   hypothetical protein LOC729956 
ZNF384                0.005   nuclear matrix transcription factor 4 isoform c [Hom...
ZNF384                0.005   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.005   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.005   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.005   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.005   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.005   nuclear matrix transcription factor 4 isoform d [Ho...
LOC100291683          0.005   PREDICTED: hypothetical protein XP_002345694 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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