Search of human proteins with 239744108

Search of human proteins with 239744108

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744108 PREDICTED: chromosome 10 open reading frame 105
[Homo sapiens]
         (133 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169184513 PREDICTED: chromosome 10 open reading frame 105 [Ho...   278   1e-75
gi|239749818 PREDICTED: chromosome 10 open reading frame 105 [Ho...   278   1e-75
gi|239744108 PREDICTED: chromosome 10 open reading frame 105 [Ho...   278   1e-75
gi|46560555 transmembrane protein 132E [Homo sapiens]                  30   0.43 
gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens]         30   0.74 
gi|169161541 PREDICTED: hypothetical protein [Homo sapiens]            30   0.74 
gi|169161244 PREDICTED: hypothetical protein [Homo sapiens]            30   0.74 
gi|14717401 protocadherin alpha subfamily C, 1 isoform 1 precurs...    29   0.97 
gi|14717403 protocadherin alpha subfamily C, 1 isoform 2 precurs...    29   0.97 
gi|169213751 PREDICTED: chromosome 19 open reading frame 67 [Hom...    29   1.3  
gi|89057223 PREDICTED: chromosome 19 open reading frame 67 [Homo...    29   1.3  
gi|89052437 PREDICTED: chromosome 19 open reading frame 67 [Homo...    29   1.3  
gi|26667180 calcium/calmodulin-dependent protein kinase II delta...    29   1.3  
gi|156071452 nardilysin isoform b [Homo sapiens]                       29   1.3  
gi|156071450 nardilysin isoform a [Homo sapiens]                       29   1.3  
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s...    28   1.6  
gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo s...    28   1.6  
gi|239753433 PREDICTED: hypothetical protein XP_002345652 [Homo ...    28   1.6  
gi|119829183 cytochrome P450, family 11, subfamily B, polypeptid...    28   2.2  
gi|191252814 RIMS binding protein 3B [Homo sapiens]                    28   2.8  
gi|191252806 RIMS binding protein 3C [Homo sapiens]                    28   2.8  
gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]           28   2.8  
gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]           28   2.8  
gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]           28   2.8  
gi|41281683 disabled homolog 2 interacting protein isoform 2 [Ho...    28   2.8  
gi|94967023 disabled homolog 2 interacting protein isoform 1 [Ho...    28   2.8  
gi|4507609 tumor necrosis factor (ligand) superfamily, member 9 ...    28   2.8  
gi|153792195 DKFZP434H0735 protein [Homo sapiens]                      28   2.8  
gi|153218631 breast carcinoma amplified sequence 3 isoform 1 [Ho...    28   2.8  
gi|33563376 TBC1 domain family, member 16 [Homo sapiens]               27   3.7  

>gi|169184513 PREDICTED: chromosome 10 open reading frame 105 [Homo
           sapiens]
          Length = 133

 Score =  278 bits (710), Expect = 1e-75
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60
           MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK
Sbjct: 1   MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60

Query: 61  PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED 120
           PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED
Sbjct: 61  PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED 120

Query: 121 NRSHCDYMESTKM 133
           NRSHCDYMESTKM
Sbjct: 121 NRSHCDYMESTKM 133


>gi|239749818 PREDICTED: chromosome 10 open reading frame 105 [Homo
           sapiens]
          Length = 133

 Score =  278 bits (710), Expect = 1e-75
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60
           MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK
Sbjct: 1   MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60

Query: 61  PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED 120
           PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED
Sbjct: 61  PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED 120

Query: 121 NRSHCDYMESTKM 133
           NRSHCDYMESTKM
Sbjct: 121 NRSHCDYMESTKM 133


>gi|239744108 PREDICTED: chromosome 10 open reading frame 105 [Homo
           sapiens]
          Length = 133

 Score =  278 bits (710), Expect = 1e-75
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60
           MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK
Sbjct: 1   MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60

Query: 61  PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED 120
           PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED
Sbjct: 61  PAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPED 120

Query: 121 NRSHCDYMESTKM 133
           NRSHCDYMESTKM
Sbjct: 121 NRSHCDYMESTKM 133


>gi|46560555 transmembrane protein 132E [Homo sapiens]
          Length = 984

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 58  LCKPAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVP 111
           LC  A L  +  R+H   P  PG  + P L +  RL   RL+    R  RP  P
Sbjct: 14  LCLSALLAHASGRSHPASPSPPGPQASPVLPVSYRLSHTRLAFF-LREARPPSP 66


>gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens]
          Length = 924

 Score = 29.6 bits (65), Expect = 0.74
 Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 23  PVTPGTLAEATDPLP-MLIALACIFLLLATCLLFMTLCKPAALDPS-----RRRAHECMP 76
           P TPG L+  T PLP   +A   +  LL    L  T   PAA   S      R A +   
Sbjct: 750 PSTPGVLSNCTSPLPEAFLANLFVHPLLPPRDLSPTAPCPAAATASLLASISRIAQDPSS 809

Query: 77  HHPGSPSEPQLRLWKRLGSLRLSLH 101
             PG     +L     L S  +SLH
Sbjct: 810 VSPGGTGGQKLAQLPELASAEMSLH 834


>gi|169161541 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 122

 Score = 29.6 bits (65), Expect = 0.74
 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 6   PSLASSPAISPLAFLSAPVTPGTLAEATD--PLP 37
           P L    A+S LA L  PV PGTL + TD  PLP
Sbjct: 69  PKLRDGAAVSRLAVL-VPVRPGTLDQGTDGGPLP 101


>gi|169161244 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 122

 Score = 29.6 bits (65), Expect = 0.74
 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 6   PSLASSPAISPLAFLSAPVTPGTLAEATD--PLP 37
           P L    A+S LA L  PV PGTL + TD  PLP
Sbjct: 69  PKLRDGAAVSRLAVL-VPVRPGTLDQGTDGGPLP 101


>gi|14717401 protocadherin alpha subfamily C, 1 isoform 1 precursor
           [Homo sapiens]
          Length = 963

 Score = 29.3 bits (64), Expect = 0.97
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 6   PSLASSPAISPLAFLSAPVTPGTLAEATDP--------LPMLIALACIFLLLATCLLFMT 57
           P L+SS  +  L   S P       +  +P        L ++IALACI  L   CLLF  
Sbjct: 644 PPLSSSVTLGVLLSNSVPQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFV 703

Query: 58  LCK 60
             K
Sbjct: 704 CTK 706


>gi|14717403 protocadherin alpha subfamily C, 1 isoform 2 precursor
           [Homo sapiens]
          Length = 818

 Score = 29.3 bits (64), Expect = 0.97
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 6   PSLASSPAISPLAFLSAPVTPGTLAEATDP--------LPMLIALACIFLLLATCLLFMT 57
           P L+SS  +  L   S P       +  +P        L ++IALACI  L   CLLF  
Sbjct: 644 PPLSSSVTLGVLLSNSVPQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFV 703

Query: 58  LCK 60
             K
Sbjct: 704 CTK 706


>gi|169213751 PREDICTED: chromosome 19 open reading frame 67 [Homo
           sapiens]
          Length = 368

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 61  PAALDPSRRRAHECMPHHPGSPSEPQLR-LWKRLGSLRLSLHSFRHGRPTVPRQPLPGPE 119
           P   DPSR       P  PG+PSEP       RL   R S  S    +P VPR   PGP 
Sbjct: 29  PPCGDPSRSTP----PGRPGNPSEPDPEDAEGRLAEARASTSS---PKPLVPR---PGPA 78

Query: 120 DNRSHCDYMES 130
             R   D + S
Sbjct: 79  PPRLSLDTLFS 89


>gi|89057223 PREDICTED: chromosome 19 open reading frame 67 [Homo
           sapiens]
          Length = 368

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 61  PAALDPSRRRAHECMPHHPGSPSEPQLR-LWKRLGSLRLSLHSFRHGRPTVPRQPLPGPE 119
           P   DPSR       P  PG+PSEP       RL   R S  S    +P VPR   PGP 
Sbjct: 29  PPCGDPSRSTP----PGRPGNPSEPDPEDAEGRLAEARASTSS---PKPLVPR---PGPA 78

Query: 120 DNRSHCDYMES 130
             R   D + S
Sbjct: 79  PPRLSLDTLFS 89


>gi|89052437 PREDICTED: chromosome 19 open reading frame 67 [Homo
           sapiens]
          Length = 368

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 61  PAALDPSRRRAHECMPHHPGSPSEPQLR-LWKRLGSLRLSLHSFRHGRPTVPRQPLPGPE 119
           P   DPSR       P  PG+PSEP       RL   R S  S    +P VPR   PGP 
Sbjct: 29  PPCGDPSRSTP----PGRPGNPSEPDPEDAEGRLAEARASTSS---PKPLVPR---PGPA 78

Query: 120 DNRSHCDYMES 130
             R   D + S
Sbjct: 79  PPRLSLDTLFS 89


>gi|26667180 calcium/calmodulin-dependent protein kinase II delta
           isoform 3 [Homo sapiens]
          Length = 499

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 79  PGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQP--LPGPEDNRS 123
           P +    + R+W R      ++H  R G PTVP +P  +P  ++N S
Sbjct: 444 PKTMQSEETRVWHRRDGKWQNVHFHRSGSPTVPIKPPCIPNGKENFS 490


>gi|156071452 nardilysin isoform b [Homo sapiens]
          Length = 1151

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 94   GSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMEST 131
            GS  LS+H   +G+  +     P  ED+ S C+ M+ T
Sbjct: 1079 GSKMLSVHVVGYGKYELEEDGTPSSEDSNSSCEVMQLT 1116


>gi|156071450 nardilysin isoform a [Homo sapiens]
          Length = 1219

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 94   GSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMEST 131
            GS  LS+H   +G+  +     P  ED+ S C+ M+ T
Sbjct: 1147 GSKMLSVHVVGYGKYELEEDGTPSSEDSNSSCEVMQLT 1184


>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
            sapiens]
          Length = 2506

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 22/81 (27%)

Query: 8    LASSPAISP---LAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCKPAAL 64
            LA++ + +P   L     P +P  +  +TDP PML                     PA  
Sbjct: 1073 LATAESAAPHGSLGHAGLPQSPAKMGNSTDPGPMLAI-------------------PAMA 1113

Query: 65   DPSRRRAHECMPHHPGSPSEP 85
               +  A    P++PG+PS P
Sbjct: 1114 TNPQNAASRRTPNNPGNPSNP 1134


>gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo
            sapiens]
          Length = 2261

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 22/81 (27%)

Query: 8    LASSPAISP---LAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCKPAAL 64
            LA++ + +P   L     P +P  +  +TDP PML                     PA  
Sbjct: 1074 LATAESAAPHGSLGHAGLPQSPAKMGNSTDPGPMLAI-------------------PAMA 1114

Query: 65   DPSRRRAHECMPHHPGSPSEP 85
               +  A    P++PG+PS P
Sbjct: 1115 TNPQNAASRRTPNNPGNPSNP 1135


>gi|239753433 PREDICTED: hypothetical protein XP_002345652 [Homo
           sapiens]
          Length = 302

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 13/100 (13%)

Query: 1   MSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK 60
           M++ GP+ A+ P   P+    AP     +  +   L +L+ L    LLL   ++ ++  +
Sbjct: 39  MASSGPTWATGPLAVPIP---APAPAALIGGSQKVLVILVGL----LLLGIDIVILSRER 91

Query: 61  PAALDPSRRRAHECMPH------HPGSPSEPQLRLWKRLG 94
            +   P+       +P        PG+PS     LW++ G
Sbjct: 92  LSKAPPTPGALSSPLPQLLLAEQEPGTPSSTAQGLWEKTG 131


>gi|119829183 cytochrome P450, family 11, subfamily B, polypeptide 2
           precursor [Homo sapiens]
          Length = 503

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 62  AALDPSRRRAHECMPHHPGSPSEPQLRLWKRLG--SLRLSLHSFRHGRPTVPRQPLPGP 118
           AA  P      E MP HPG+     L++W+  G   L L +H        + R  L GP
Sbjct: 28  AARAPRTVLPFEAMPQHPGNRWLRLLQIWREQGYEHLHLEMHQTFQELGPIFRYNLGGP 86


>gi|191252814 RIMS binding protein 3B [Homo sapiens]
          Length = 1639

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 19/91 (20%)

Query: 1    MSTEGPSLASSPAISPLAFLSA---PVTPGTLAEATDPLPMLIALACIFLLLATCLLFMT 57
            MS  G SL S PA  P  F      P TP       DP    +           C   ++
Sbjct: 1167 MSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFP-------VCPQKLS 1219

Query: 58   LCKPAALDPSRRRAHECMPHHPGSPSEPQLR 88
            L  P+A         +  PH+PGS  EPQ +
Sbjct: 1220 LAPPSA---------KASPHNPGSCGEPQAK 1241


>gi|191252806 RIMS binding protein 3C [Homo sapiens]
          Length = 1639

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 19/91 (20%)

Query: 1    MSTEGPSLASSPAISPLAFLSA---PVTPGTLAEATDPLPMLIALACIFLLLATCLLFMT 57
            MS  G SL S PA  P  F      P TP       DP    +           C   ++
Sbjct: 1167 MSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFP-------VCPQKLS 1219

Query: 58   LCKPAALDPSRRRAHECMPHHPGSPSEPQLR 88
            L  P+A         +  PH+PGS  EPQ +
Sbjct: 1220 LAPPSA---------KASPHNPGSCGEPQAK 1241


>gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 69  RRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYM 128
           RRA  C PH  GS    +  L  R  S  LS     H  P  P    PG    R H + +
Sbjct: 83  RRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARP----PGSGPGRGHGEAV 138

Query: 129 E 129
           E
Sbjct: 139 E 139


>gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 69  RRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYM 128
           RRA  C PH  GS    +  L  R  S  LS     H  P  P    PG    R H + +
Sbjct: 83  RRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARP----PGSGPGRGHGEAV 138

Query: 129 E 129
           E
Sbjct: 139 E 139


>gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 69  RRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYM 128
           RRA  C PH  GS    +  L  R  S  LS     H  P  P    PG    R H + +
Sbjct: 83  RRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARP----PGSGPGRGHGEAV 138

Query: 129 E 129
           E
Sbjct: 139 E 139


>gi|41281683 disabled homolog 2 interacting protein isoform 2 [Homo
           sapiens]
          Length = 1065

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 32/110 (29%), Positives = 41/110 (37%), Gaps = 15/110 (13%)

Query: 23  PVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCKPAALDPSRRRAHECMPHHP--- 79
           P TPGT +E     P L+A       +      + L  P  L  S    H  +  H    
Sbjct: 683 PTTPGT-SEGAPGRPQLLAPLSFQNPVYQMAAGLPL-SPRGLGDSGSEGHSSLSSHSNSE 740

Query: 80  --------GSPSEPQLRLWKRLGSLRLSLHSF--RHGRPTVPRQPLPGPE 119
                   GS S     L +R G L     S   + G+PTVPRQ   GP+
Sbjct: 741 ELAAAAKLGSFSTAAEELARRPGELARRQMSLTEKGGQPTVPRQNSAGPQ 790


>gi|94967023 disabled homolog 2 interacting protein isoform 1 [Homo
           sapiens]
          Length = 1132

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 32/110 (29%), Positives = 41/110 (37%), Gaps = 15/110 (13%)

Query: 23  PVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCKPAALDPSRRRAHECMPHHP--- 79
           P TPGT +E     P L+A       +      + L  P  L  S    H  +  H    
Sbjct: 779 PTTPGT-SEGAPGRPQLLAPLSFQNPVYQMAAGLPL-SPRGLGDSGSEGHSSLSSHSNSE 836

Query: 80  --------GSPSEPQLRLWKRLGSLRLSLHSF--RHGRPTVPRQPLPGPE 119
                   GS S     L +R G L     S   + G+PTVPRQ   GP+
Sbjct: 837 ELAAAAKLGSFSTAAEELARRPGELARRQMSLTEKGGQPTVPRQNSAGPQ 886


>gi|4507609 tumor necrosis factor (ligand) superfamily, member 9
          [Homo sapiens]
          Length = 254

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 12/80 (15%)

Query: 9  ASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCKPAALDPSR 68
          AS  ++ P     AP  P   A A   LP  +    + LLL      + L  P A+  +R
Sbjct: 4  ASDASLDP----EAPWPPAPRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSGAR 59

Query: 69 RRAHECMPHHPGSPSEPQLR 88
                    PGS + P+LR
Sbjct: 60 A--------SPGSAASPRLR 71


>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
          Length = 1639

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 19/91 (20%)

Query: 1    MSTEGPSLASSPAISPLAFLSA---PVTPGTLAEATDPLPMLIALACIFLLLATCLLFMT 57
            MS  G SL S PA  P  F      P TP       DP    +           C   ++
Sbjct: 1167 MSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFP-------VCPQKLS 1219

Query: 58   LCKPAALDPSRRRAHECMPHHPGSPSEPQLR 88
            L  P+A         +  PH+PGS  EPQ +
Sbjct: 1220 LAPPSA---------KASPHNPGSCGEPQAK 1241


>gi|153218631 breast carcinoma amplified sequence 3 isoform 1 [Homo
           sapiens]
          Length = 928

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 8   LASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFMTLCK---PAAL 64
           L S   + PLA +  P+T GT+ + T P          +L  A C      CK   P  +
Sbjct: 520 LPSLMVVMPLAQIKQPMTLGTITKRTGP----------YLFGAGCFSIKAPCKVKPPPQI 569

Query: 65  DPSRRRAHE 73
            PS+    E
Sbjct: 570 SPSKSMGGE 578


>gi|33563376 TBC1 domain family, member 16 [Homo sapiens]
          Length = 767

 Score = 27.3 bits (59), Expect = 3.7
 Identities = 13/28 (46%), Positives = 13/28 (46%)

Query: 58  LCKPAALDPSRRRAHECMPHHPGSPSEP 85
           LC     D     A EC  HHPGS S P
Sbjct: 709 LCGSGMWDSGSMPAVECTGHHPGSESCP 736


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,823,793
Number of Sequences: 37866
Number of extensions: 351678
Number of successful extensions: 1320
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1275
Number of HSP's gapped (non-prelim): 74
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.