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Search of human proteins with 239743954
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743954 PREDICTED: hypothetical protein XP_002344279 [Homo
sapiens]
(98 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755190 PREDICTED: hypothetical protein [Homo sapiens] 211 8e-56
gi|239749686 PREDICTED: hypothetical protein [Homo sapiens] 211 8e-56
gi|239743954 PREDICTED: hypothetical protein XP_002344279 [Homo ... 211 8e-56
gi|197276594 RNA binding motif protein 20 [Homo sapiens] 32 0.083
gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 31 0.19
gi|40807489 egf-like module containing, mucin-like, hormone rece... 29 0.92
gi|239756172 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239750674 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239744984 PREDICTED: hypothetical protein XP_002343349 [Homo ... 28 1.2
gi|163310741 LIM and calponin homology domains 1 isoform a [Homo... 28 1.2
gi|47458036 hereditary sensory neuropathy, type II [Homo sapiens] 28 1.6
gi|118498364 dapper 1 isoform 2 [Homo sapiens] 28 2.1
gi|24158478 dapper 1 isoform 1 [Homo sapiens] 28 2.1
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 27 2.7
gi|215422375 neural precursor cell expressed, developmentally do... 27 2.7
gi|5453680 neural precursor cell expressed, developmentally down... 27 2.7
gi|239753883 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo ... 27 4.6
gi|169174934 PREDICTED: similar to ADAMTS-like 2 [Homo sapiens] 27 4.6
gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo ... 27 4.6
gi|81158080 cystin 1 [Homo sapiens] 27 4.6
gi|223718260 ADAMTS-like 2 precursor [Homo sapiens] 26 6.0
gi|41281450 ADAMTS-like 2 precursor [Homo sapiens] 26 6.0
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 26 6.0
gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [H... 26 7.8
gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [H... 26 7.8
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ... 26 7.8
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ... 26 7.8
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 26 7.8
>gi|239755190 PREDICTED: hypothetical protein [Homo sapiens]
Length = 98
Score = 211 bits (538), Expect = 8e-56
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60
MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD
Sbjct: 1 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60
Query: 61 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI 98
HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI
Sbjct: 61 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI 98
>gi|239749686 PREDICTED: hypothetical protein [Homo sapiens]
Length = 98
Score = 211 bits (538), Expect = 8e-56
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60
MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD
Sbjct: 1 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60
Query: 61 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI 98
HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI
Sbjct: 61 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI 98
>gi|239743954 PREDICTED: hypothetical protein XP_002344279 [Homo
sapiens]
Length = 98
Score = 211 bits (538), Expect = 8e-56
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60
MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD
Sbjct: 1 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60
Query: 61 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI 98
HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI
Sbjct: 61 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI 98
>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
Length = 1227
Score = 32.3 bits (72), Expect = 0.083
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 48 SEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRD 87
S P R +PR H + +C + PGP+ A G GRD
Sbjct: 635 SRSPVSRSLSPRSHTPSFTSCSSSHSPPGPSRADWGNGRD 674
>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
Length = 521
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 4 QCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQ 63
Q P + PQ P QQP Q Q Q +P+ P +SH+ P + N +P H+
Sbjct: 368 QQPQQPQQPQPPQQQPPQPQQPQPQQPQQPQ--QPPQQQSHLVPVSLSNLIPGSPLPHVG 425
Query: 64 ASGT 67
A+ T
Sbjct: 426 AALT 429
>gi|40807489 egf-like module containing, mucin-like, hormone
receptor-like sequence 1 [Homo sapiens]
Length = 886
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 40 SWESHVSPSEIPNGRQRTPRDH--IQASGTCQDAID 73
SWE H+ P+ PN + RD A TC + +D
Sbjct: 17 SWEGHIRPTRKPNTKGNNCRDSTLCPAYATCTNTVD 52
>gi|239756172 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 42 ESHVSPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTL 90
ES + +PN +P + G C GP +PA+ G+ R L
Sbjct: 5 ESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTIL 53
>gi|239750674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 42 ESHVSPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTL 90
ES + +PN +P + G C GP +PA+ G+ R L
Sbjct: 5 ESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTIL 53
>gi|239744984 PREDICTED: hypothetical protein XP_002343349 [Homo
sapiens]
Length = 122
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 42 ESHVSPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTL 90
ES + +PN +P + G C GP +PA+ G+ R L
Sbjct: 5 ESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTIL 53
>gi|163310741 LIM and calponin homology domains 1 isoform a [Homo
sapiens]
Length = 1083
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 6 PFKALSPQI---PNQQPFQGGATQDQAFDEPRLFGVPSWESHV--SPSEIPNGRQRTPRD 60
P +PQ+ P+Q T +P+ + +H SPSE R+++PR+
Sbjct: 928 PHCGTNPQLAQDPSQNQQTSNPTHSSEDVKPKTLPLDKSINHQIESPSE---RRKKSPRE 984
Query: 61 HIQAS--GTCQDAIDGPGPNPAREGK 84
H QA C G PN + GK
Sbjct: 985 HFQAGPFSPCSPTPPGQSPNRSISGK 1010
>gi|47458036 hereditary sensory neuropathy, type II [Homo sapiens]
Length = 434
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 13 QIPNQQPFQGGATQDQAFDEP 33
QIP Q+P QGG T F+ P
Sbjct: 180 QIPEQKPVQGGPTSSSVFEFP 200
>gi|118498364 dapper 1 isoform 2 [Homo sapiens]
Length = 799
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 8 KALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGT 67
+A S ++P + GA D P+ + H S I G +P++ Q SG
Sbjct: 390 QAESKRVPLPEGCPSGAASDLQSKHLPKTAKPASQEHARCSAIGTGE--SPKESAQLSGA 447
Query: 68 CQDAIDGPGPNPAREGK 84
GP P +E K
Sbjct: 448 SPKESPSRGPAPPQENK 464
>gi|24158478 dapper 1 isoform 1 [Homo sapiens]
Length = 836
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 8 KALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGT 67
+A S ++P + GA D P+ + H S I G +P++ Q SG
Sbjct: 427 QAESKRVPLPEGCPSGAASDLQSKHLPKTAKPASQEHARCSAIGTGE--SPKESAQLSGA 484
Query: 68 CQDAIDGPGPNPAREGK 84
GP P +E K
Sbjct: 485 SPKESPSRGPAPPQENK 501
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 14 IPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGTCQDA 71
+P ++ T+ + + R PS S SPS P+G Q +D QA T A
Sbjct: 646 VPRSPDWKRSPTRTSSLSQNR---TPSKTSSHSPSTFPSGGQTLSQDDSQADATTSKA 700
>gi|215422375 neural precursor cell expressed, developmentally
down-regulated 9 isoform 3 [Homo sapiens]
Length = 834
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 8 KALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQR 56
++LSP P Q Q +Q+ A+D PR GV E SE N ++R
Sbjct: 295 QSLSPNHPPPQLGQSVGSQNDAYDVPR--GVQFLEPPAETSEKANPQER 341
>gi|5453680 neural precursor cell expressed, developmentally
down-regulated 9 isoform 1 [Homo sapiens]
Length = 834
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 8 KALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQR 56
++LSP P Q Q +Q+ A+D PR GV E SE N ++R
Sbjct: 295 QSLSPNHPPPQLGQSVGSQNDAYDVPR--GVQFLEPPAETSEKANPQER 341
>gi|239753883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 54 RQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTLET 92
R R PR + + PGP GKGR+R L T
Sbjct: 126 RLRRPRHRLPGGSR---RLPAPGPRAPAPGKGRERELRT 161
>gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo
sapiens]
Length = 296
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 54 RQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTLET 92
R R PR + + PGP GKGR+R L T
Sbjct: 126 RLRRPRHRLPGGSR---RLPAPGPRAPAPGKGRERELRT 161
>gi|169174934 PREDICTED: similar to ADAMTS-like 2 [Homo sapiens]
Length = 660
Score = 26.6 bits (57), Expect = 4.6
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 14 IPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGTCQDAID 73
IP+ G A+ ++ + RLFG P + + PS+ G+ + + C+ A
Sbjct: 73 IPHNGSLYGQASSERLGLDNRLFGHPGLDMELGPSQ---GQ--------ETNEVCEQAGG 121
Query: 74 GPGPNPAREGKG-RDRTL 90
G P R GKG RDR +
Sbjct: 122 GACEGPPR-GKGFRDRNV 138
>gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo
sapiens]
Length = 296
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 54 RQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTLET 92
R R PR + + PGP GKGR+R L T
Sbjct: 126 RLRRPRHRLPGGSR---RLPAPGPRAPAPGKGRERELRT 161
>gi|81158080 cystin 1 [Homo sapiens]
Length = 158
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Query: 46 SPSEIPNG----------RQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTL 90
SP +P G R+R P + G + G P+P GRD TL
Sbjct: 17 SPESLPAGPGAAALEGGTRRRVPVAAAEVPGAAAEEAPGRDPSPVAPPDGRDETL 71
>gi|223718260 ADAMTS-like 2 precursor [Homo sapiens]
Length = 951
Score = 26.2 bits (56), Expect = 6.0
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 14 IPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGTCQDAID 73
+P+ G A+ ++ + RLFG P + + PS+ G+ + + C+ A
Sbjct: 364 VPHNGSLYGQASSERLGLDNRLFGHPGLDMELGPSQ---GQ--------ETNEVCEQAGG 412
Query: 74 GPGPNPAREGKG-RDRTL 90
G P R GKG RDR +
Sbjct: 413 GACEGPPR-GKGFRDRNV 429
>gi|41281450 ADAMTS-like 2 precursor [Homo sapiens]
Length = 951
Score = 26.2 bits (56), Expect = 6.0
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 14 IPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGTCQDAID 73
+P+ G A+ ++ + RLFG P + + PS+ G+ + + C+ A
Sbjct: 364 VPHNGSLYGQASSERLGLDNRLFGHPGLDMELGPSQ---GQ--------ETNEVCEQAGG 412
Query: 74 GPGPNPAREGKG-RDRTL 90
G P R GKG RDR +
Sbjct: 413 GACEGPPR-GKGFRDRNV 429
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 26.2 bits (56), Expect = 6.0
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 18 QPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGTCQDAIDGPGP 77
Q +G + A EPR E +P QR ASG D++D GP
Sbjct: 106 QQVEGASPGRGAQGEPRGEAQREPEDSAAPERQEEAEQRPEVPEGSASGEAGDSVDAEGP 165
Query: 78 ---NPAREGKGRDRTLETHG 94
N EG D ++E G
Sbjct: 166 LGDNIEAEGPAGD-SVEAEG 184
>gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [Homo
sapiens]
Length = 756
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 15 PNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60
P Q + G A ++P P E+ P E P+ +RTP +
Sbjct: 561 PRQAELKSGPASRPALEKPH----PHEEATTLPEEAPSNDERTPEE 602
>gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [Homo
sapiens]
Length = 645
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 15 PNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60
P Q + G A ++P P E+ P E P+ +RTP +
Sbjct: 450 PRQAELKSGPASRPALEKPH----PHEEATTLPEEAPSNDERTPEE 491
>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 46 SPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTLE 91
SP R PR +GT GP +R G+GR R L+
Sbjct: 132 SPRRAIEAGARPPRQR-PGAGTAAARASRAGPRASRRGRGRGRGLQ 176
>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
sapiens]
Length = 219
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 46 SPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTLE 91
SP R PR +GT GP +R G+GR R L+
Sbjct: 132 SPRRAIEAGARPPRQR-PGAGTAAARASRAGPRASRRGRGRGRGLQ 176
>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
sapiens]
Length = 219
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 46 SPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTLE 91
SP R PR +GT GP +R G+GR R L+
Sbjct: 132 SPRRAIEAGARPPRQR-PGAGTAAARASRAGPRASRRGRGRGRGLQ 176
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 25.8 bits (55), Expect = 7.8
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 7 FKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVS--PSEIPNGRQRTPRDHIQA 64
+ +SP P P G + L GVPS S VS PS++P+ P
Sbjct: 97 YSLVSPHRPLVSPLLSGVPSPPSDVPSLLSGVPSLPSDVSSPPSDVPSLLSDVPS---LL 153
Query: 65 SGTCQDAIDGPGP 77
SG D P P
Sbjct: 154 SGVPSPPSDVPSP 166
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,365,995
Number of Sequences: 37866
Number of extensions: 288313
Number of successful extensions: 556
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 36
length of query: 98
length of database: 18,247,518
effective HSP length: 69
effective length of query: 29
effective length of database: 15,634,764
effective search space: 453408156
effective search space used: 453408156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.