Search of human proteins with 239743594

Search of human proteins with 239743594

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743594 PREDICTED: hypothetical protein XP_002342913,
partial [Homo sapiens]
         (552 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo ...  1118   0.0  
gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo ...  1118   0.0  
gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo ...  1118   0.0  
gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo ...  1118   0.0  
gi|239743594 PREDICTED: hypothetical protein XP_002342913, parti...  1118   0.0  
gi|126273519 exonuclease GOR [Homo sapiens]                          1117   0.0  
gi|145199237 transcription elongation factor B polypeptide 3 bin...   691   0.0  
gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens]              108   1e-23
gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens]              108   1e-23
gi|194239666 interferon stimulated exonuclease gene 20kDa-like 1...    81   3e-15
gi|6857800 interferon stimulated exonuclease [Homo sapiens]            74   3e-13
gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2 ...    67   6e-11
gi|76781492 XPMC2 prevents mitotic catastrophe 2 homolog [Homo s...    56   8e-08
gi|188536114 PAN2 polyA specific ribonuclease subunit homolog is...    48   2e-05
gi|188536112 PAN2 polyA specific ribonuclease subunit homolog is...    48   2e-05
gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]              36   0.10 
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi...    33   0.52 
gi|224496106 small fragment nuclease [Homo sapiens]                    33   0.68 
gi|33356174 pinin, desmosome associated protein [Homo sapiens]         32   1.5  
gi|98986457 host cell factor 1 [Homo sapiens]                          32   2.0  
gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens]        32   2.0  
gi|50083281 KIAA1853 protein [Homo sapiens]                            31   2.6  
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi...    31   2.6  
gi|169213922 PREDICTED: hypothetical protein isoform 1 [Homo sap...    31   3.4  
gi|169213920 PREDICTED: hypothetical protein isoform 2 [Homo sap...    31   3.4  
gi|169214343 PREDICTED: hypothetical protein [Homo sapiens]            31   3.4  
gi|169213300 PREDICTED: hypothetical protein [Homo sapiens]            31   3.4  
gi|19923646 family with sequence similarity 126, member A [Homo ...    31   3.4  
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]         30   4.4  
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ...    30   4.4  

>gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo
           sapiens]
          Length = 675

 Score = 1118 bits (2893), Expect = 0.0
 Identities = 552/552 (100%), Positives = 552/552 (100%)

Query: 1   PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 60
           PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA
Sbjct: 124 PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 183

Query: 61  CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG 120
           CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG
Sbjct: 184 CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG 243

Query: 121 RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL 180
           RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL
Sbjct: 244 RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL 303

Query: 181 FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR 240
           FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR
Sbjct: 304 FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR 363

Query: 241 AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV 300
           AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV
Sbjct: 364 AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV 423

Query: 301 SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD 360
           SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD
Sbjct: 424 SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD 483

Query: 361 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 420
           GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD
Sbjct: 484 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 543

Query: 421 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 480
           YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA
Sbjct: 544 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 603

Query: 481 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR 540
           VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR
Sbjct: 604 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR 663

Query: 541 HRSASPAALACP 552
           HRSASPAALACP
Sbjct: 664 HRSASPAALACP 675


>gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo
           sapiens]
          Length = 675

 Score = 1118 bits (2893), Expect = 0.0
 Identities = 552/552 (100%), Positives = 552/552 (100%)

Query: 1   PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 60
           PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA
Sbjct: 124 PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 183

Query: 61  CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG 120
           CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG
Sbjct: 184 CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG 243

Query: 121 RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL 180
           RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL
Sbjct: 244 RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL 303

Query: 181 FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR 240
           FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR
Sbjct: 304 FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR 363

Query: 241 AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV 300
           AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV
Sbjct: 364 AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV 423

Query: 301 SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD 360
           SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD
Sbjct: 424 SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD 483

Query: 361 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 420
           GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD
Sbjct: 484 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 543

Query: 421 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 480
           YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA
Sbjct: 544 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 603

Query: 481 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR 540
           VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR
Sbjct: 604 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR 663

Query: 541 HRSASPAALACP 552
           HRSASPAALACP
Sbjct: 664 HRSASPAALACP 675


>gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo
           sapiens]
          Length = 675

 Score = 1118 bits (2893), Expect = 0.0
 Identities = 552/552 (100%), Positives = 552/552 (100%)

Query: 1   PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 60
           PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA
Sbjct: 124 PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 183

Query: 61  CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG 120
           CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG
Sbjct: 184 CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG 243

Query: 121 RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL 180
           RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL
Sbjct: 244 RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL 303

Query: 181 FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR 240
           FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR
Sbjct: 304 FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR 363

Query: 241 AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV 300
           AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV
Sbjct: 364 AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV 423

Query: 301 SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD 360
           SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD
Sbjct: 424 SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD 483

Query: 361 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 420
           GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD
Sbjct: 484 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 543

Query: 421 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 480
           YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA
Sbjct: 544 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 603

Query: 481 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR 540
           VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR
Sbjct: 604 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR 663

Query: 541 HRSASPAALACP 552
           HRSASPAALACP
Sbjct: 664 HRSASPAALACP 675


>gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo
           sapiens]
          Length = 675

 Score = 1118 bits (2893), Expect = 0.0
 Identities = 552/552 (100%), Positives = 552/552 (100%)

Query: 1   PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 60
           PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA
Sbjct: 124 PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 183

Query: 61  CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG 120
           CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG
Sbjct: 184 CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG 243

Query: 121 RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL 180
           RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL
Sbjct: 244 RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL 303

Query: 181 FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR 240
           FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR
Sbjct: 304 FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR 363

Query: 241 AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV 300
           AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV
Sbjct: 364 AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV 423

Query: 301 SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD 360
           SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD
Sbjct: 424 SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD 483

Query: 361 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 420
           GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD
Sbjct: 484 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 543

Query: 421 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 480
           YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA
Sbjct: 544 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 603

Query: 481 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR 540
           VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR
Sbjct: 604 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR 663

Query: 541 HRSASPAALACP 552
           HRSASPAALACP
Sbjct: 664 HRSASPAALACP 675


>gi|239743594 PREDICTED: hypothetical protein XP_002342913, partial
           [Homo sapiens]
          Length = 552

 Score = 1118 bits (2893), Expect = 0.0
 Identities = 552/552 (100%), Positives = 552/552 (100%)

Query: 1   PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 60
           PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA
Sbjct: 1   PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 60

Query: 61  CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG 120
           CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG
Sbjct: 61  CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG 120

Query: 121 RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL 180
           RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL
Sbjct: 121 RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL 180

Query: 181 FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR 240
           FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR
Sbjct: 181 FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR 240

Query: 241 AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV 300
           AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV
Sbjct: 241 AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV 300

Query: 301 SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD 360
           SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD
Sbjct: 301 SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD 360

Query: 361 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 420
           GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD
Sbjct: 361 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 420

Query: 421 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 480
           YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA
Sbjct: 421 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 480

Query: 481 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR 540
           VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR
Sbjct: 481 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR 540

Query: 541 HRSASPAALACP 552
           HRSASPAALACP
Sbjct: 541 HRSASPAALACP 552


>gi|126273519 exonuclease GOR [Homo sapiens]
          Length = 675

 Score = 1117 bits (2888), Expect = 0.0
 Identities = 551/552 (99%), Positives = 552/552 (100%)

Query: 1   PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 60
           PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA
Sbjct: 124 PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 183

Query: 61  CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG 120
           CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG
Sbjct: 184 CRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVG 243

Query: 121 RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL 180
           RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL
Sbjct: 244 RQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQL 303

Query: 181 FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR 240
           FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR
Sbjct: 304 FTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR 363

Query: 241 AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV 300
           AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV
Sbjct: 364 AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSSCRVCCRCGTEYLV 423

Query: 301 SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD 360
           SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD
Sbjct: 424 SSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVAKQHVRDGRKESLD 483

Query: 361 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 420
           GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD
Sbjct: 484 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 543

Query: 421 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 480
           YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA
Sbjct: 544 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 603

Query: 481 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQIQPR 540
           VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDA+ACLQLVMWKVRQRAQIQPR
Sbjct: 604 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKVRQRAQIQPR 663

Query: 541 HRSASPAALACP 552
           HRSASPAALACP
Sbjct: 664 HRSASPAALACP 675


>gi|145199237 transcription elongation factor B polypeptide 3 binding
            protein 1 [Homo sapiens]
          Length = 1221

 Score =  691 bits (1784), Expect = 0.0
 Identities = 360/549 (65%), Positives = 408/549 (74%), Gaps = 43/549 (7%)

Query: 29   QAEPQNRGPAVPPAWPKMVTESCYF---PAQRGSACRLPAAPRLTERPSGVRISAPRKRK 85
            + EP  RGPAVPPA P    E CY     AQR SA  L A  RL E+   V ISAP +++
Sbjct: 672  EVEPPRRGPAVPPARPPTAQEVCYLRAQQAQRASASLLQAPARLAEKSPSVHISAPGEKR 731

Query: 86   TIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVGRQPGKTRNRSGMACKTTATTSSKRI 145
             IAH  +P L    T AKRT  AS SQ S G + G Q  KTR  SGMA KTT T   KRI
Sbjct: 732  RIAHIPNPRLAAAPTGAKRTLAASGSQSSNGPEPGGQQLKTRTLSGMASKTTTTIIPKRI 791

Query: 146  VRRASLPSLSLKKPIILRSSGCQVPTVLRRGYLQLFTEECLKFCASKQEAEEKALNEEKV 205
                SL SL  KKPII +  G +VPTV+R+ YL LF EECLKFC S QEA EKALNEEKV
Sbjct: 792  AHSPSLQSL--KKPIIPKEFGGKVPTVIRQRYLNLFIEECLKFCTSNQEAIEKALNEEKV 849

Query: 206  AYDCSPNKNRYLNVVLNTLKRLKGLTPSSMPGLSR------------------------- 240
            AYD SP+KN YLNV +NTLK+L+GL PS++PGLS+                         
Sbjct: 850  AYDRSPSKNIYLNVAVNTLKKLRGLAPSAVPGLSKTSGRRVVSHEVVLGGRLAAKTSFSL 909

Query: 241  -------------AALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVLFTGQGKGPGDSS 287
                         AALYSRL+E+LLTQDQLKENGYPFPHPERPGGA++FT + K P DSS
Sbjct: 910  SRPSSPRVEDLKGAALYSRLREYLLTQDQLKENGYPFPHPERPGGAIIFTAEEKRPKDSS 969

Query: 288  CRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCCAAAPGSVGCQVA 347
            CR CCRCGTEYLVSSSGRC+RD+ CYYHWGR+R ++VAGG  +QY CC+AA GSVGCQVA
Sbjct: 970  CRTCCRCGTEYLVSSSGRCIRDEECYYHWGRLRRNRVAGGWETQYMCCSAAAGSVGCQVA 1029

Query: 348  KQHVRDGRKESLDGFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVV 407
            KQHV+DGRKE L+GFV+TF+KELS D +PGIYALDCEM YTT+GLELTRVTVVD D+ VV
Sbjct: 1030 KQHVQDGRKERLEGFVKTFEKELSGDTHPGIYALDCEMSYTTYGLELTRVTVVDTDVHVV 1089

Query: 408  YDTFVKPDNEIVDYNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLL 467
            YDTFVKPDNEIVDYNTRFSGVTEAD+A TS+TL  VQA+LLS FSA TILIGHSLESDLL
Sbjct: 1090 YDTFVKPDNEIVDYNTRFSGVTEADLADTSVTLRDVQAVLLSMFSADTILIGHSLESDLL 1149

Query: 468  ALKLIHSTVVDTAVLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLV 527
            ALK+IHSTVVDT+VLFPH LG PYKRSLRNL ADYL QIIQD+ DGH+SSEDA AC+ LV
Sbjct: 1150 ALKVIHSTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDAGACMHLV 1209

Query: 528  MWKVRQRAQ 536
            +WKVR+ A+
Sbjct: 1210 IWKVREDAK 1218



 Score = 33.9 bits (76), Expect = 0.40
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 38/175 (21%)

Query: 16  PQMHKQASAFVDI---QAEPQNRGPAVPPAWPKMV-----------TESCYFPAQRGSAC 61
           P++ K+A +  D+   ++E +  GP VP  WP  +             S  FP  +G   
Sbjct: 509 PKLKKRALSHADLFGDESEDEAAGPGVPSVWPSALPSLSSDSDSDSDSSLGFPEAQGPPK 568

Query: 62  RLPAAPRLTERPS------------GVRISAPRKRKTIAHSSSP---CLVTGYTDAKRTR 106
           RL A+P  +  PS            G  +      K +   S P   CL       +   
Sbjct: 569 RLKASPPPSPAPSSSSSSSSSTSSAGADVDYSALEKEVDFDSDPMEECL-------RIFN 621

Query: 107 VASSSQRSRGSKVGRQPGKTR--NRSGMACKTTATTSSKRIVRRASLPSLSLKKP 159
            ++S +     ++ RQP K       G++  TT     KR +   S     ++ P
Sbjct: 622 ESTSVKTEDRGRLARQPPKEEKSEEKGLSGLTTLFPGQKRRISHLSKQGQEVEPP 676


>gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens]
          Length = 743

 Score =  108 bits (271), Expect = 1e-23
 Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 3/153 (1%)

Query: 378 IYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTS 437
           ++ LDCEMC T+ G ELTR+++V      V D  VKP+N+I+DY T FSG+T+  +   +
Sbjct: 228 LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVT 287

Query: 438 ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKRSLRN 497
             L  VQ  L +      +L+GHSL+ DL ALK+IH  V+DT++L+    G  +K  L+ 
Sbjct: 288 TKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKF 345

Query: 498 LAADYLAQIIQ-DSQDGHNSSEDANACLQLVMW 529
           LA   L + IQ   + GH+++EDA   L+L  +
Sbjct: 346 LAKVILGKDIQCPDRLGHDATEDARTILELARY 378


>gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens]
          Length = 774

 Score =  108 bits (271), Expect = 1e-23
 Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 3/153 (1%)

Query: 378 IYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTS 437
           ++ LDCEMC T+ G ELTR+++V      V D  VKP+N+I+DY T FSG+T+  +   +
Sbjct: 228 LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVT 287

Query: 438 ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKRSLRN 497
             L  VQ  L +      +L+GHSL+ DL ALK+IH  V+DT++L+    G  +K  L+ 
Sbjct: 288 TKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKF 345

Query: 498 LAADYLAQIIQ-DSQDGHNSSEDANACLQLVMW 529
           LA   L + IQ   + GH+++EDA   L+L  +
Sbjct: 346 LAKVILGKDIQCPDRLGHDATEDARTILELARY 378


>gi|194239666 interferon stimulated exonuclease gene 20kDa-like 1
           [Homo sapiens]
          Length = 325

 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 18/169 (10%)

Query: 380 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 436
           A+DCEM  T       EL R ++V     V+YD +++P+  I DY TR+SG+T   + K 
Sbjct: 112 AIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRK- 170

Query: 437 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFPHYLGFP---- 490
           ++     Q  +L     + +++GH+L +D  ALK +H  S   DT  + P++L  P    
Sbjct: 171 AVPFQVAQKEILKLLKGK-VVVGHALHNDFQALKYVHPRSQTRDTTYV-PNFLSEPGLHT 228

Query: 491 -YKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQL-----VMWKVRQ 533
             + SL++LA   L + IQ  Q GH+S EDA   ++L     V W+ ++
Sbjct: 229 RARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQE 277


>gi|6857800 interferon stimulated exonuclease [Homo sapiens]
          Length = 181

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 378 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVT-EADVA 434
           + A+DCEM       E  L R ++V+    V+YD F++P+ EI DY TR SGVT +  V 
Sbjct: 7   VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 66

Query: 435 KTSITLPQVQAILLSFFSAQTILIGHSLESDLLALK------LIHSTVVDTAVLFPHYLG 488
            T   + +++ + L       +++GH L+ D  ALK       I+ T  D  +     L 
Sbjct: 67  ATPFAVARLEILQL---LKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123

Query: 489 FPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQ 536
              + SLR L+   L + IQ+S  GH+S EDA A ++L     R RA+
Sbjct: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRAR 171


>gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2
           [Homo sapiens]
          Length = 353

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 17/159 (10%)

Query: 380 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 436
           A+DCEM  T    H   L R ++V+ +  V+YD ++ P   IVDY TR+SG+ +  +   
Sbjct: 181 AIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNA 240

Query: 437 S---ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFP--HYLGF 489
           +   I   Q+  IL        I++GH++ +D  AL+  H  S   DT+ + P       
Sbjct: 241 TPFKIARGQILKILTG-----KIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADC 295

Query: 490 PYK--RSLRNLAADYLAQIIQDSQDGHNSSEDANACLQL 526
           P     SL++L    L + IQ  + GH+S EDA A ++L
Sbjct: 296 PENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334


>gi|76781492 XPMC2 prevents mitotic catastrophe 2 homolog [Homo
           sapiens]
          Length = 422

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 13/197 (6%)

Query: 339 PGSVGCQVAKQHVRDGRKE--SLDGFVE-TFKKELSRDAYPGIYALDCEMCYTTHGLE-- 393
           P  +   +  +  +  RK+    +G V  +  KE +        ALDCEM       E  
Sbjct: 201 PADIEAAIGPEAAKIARKQLGQSEGSVSLSLVKEQAFGGLTRALALDCEMVGVGPKGEES 260

Query: 394 -LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTSITLPQVQAILLSFFS 452
              RV++V+   + VYD +VKP   + DY T  SG+   ++ K    L  VQ  +     
Sbjct: 261 MAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL-KQGEELEVVQKEVAEMLK 319

Query: 453 AQTILIGHSLESDLLALKLIH--STVVDTAVLFPHYLGFPYKR-SLRNLAADYLAQIIQD 509
            + IL+GH+L +DL  L L H    + DT    P        R SLR L+   L   +Q 
Sbjct: 320 GR-ILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRPSLRLLSEKILGLQVQQ 378

Query: 510 SQDGHNSSEDANACLQL 526
           ++  H S +DA A ++L
Sbjct: 379 AE--HCSIQDAQAAMRL 393


>gi|188536114 PAN2 polyA specific ribonuclease subunit homolog isoform
            2 [Homo sapiens]
          Length = 1202

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 409  DTFVKPDNEIVDYNTRFSGVTEADV-----AKTSITLPQVQAILLSFFSAQTILIGHSLE 463
            D ++    ++VDY T++SG+   D+     +K   TL      L          +GH L+
Sbjct: 1026 DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQ 1085

Query: 464  SDLLALKLI--HSTVVDTAVLFPHYLGFPYKR--SLRNLAADYLAQIIQDSQDGHNSSED 519
             D   + L+     V+DT  LF      P KR  SLR LA  +L   IQ   + H+S ED
Sbjct: 1086 KDFRVINLMVPKDQVLDTVYLF----HMPRKRMISLRFLAWYFLDLKIQG--ETHDSIED 1139

Query: 520  ANACLQL 526
            A   LQL
Sbjct: 1140 ARTALQL 1146


>gi|188536112 PAN2 polyA specific ribonuclease subunit homolog isoform
            1 [Homo sapiens]
          Length = 1198

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 409  DTFVKPDNEIVDYNTRFSGVTEADV-----AKTSITLPQVQAILLSFFSAQTILIGHSLE 463
            D ++    ++VDY T++SG+   D+     +K   TL      L          +GH L+
Sbjct: 1022 DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQ 1081

Query: 464  SDLLALKLI--HSTVVDTAVLFPHYLGFPYKR--SLRNLAADYLAQIIQDSQDGHNSSED 519
             D   + L+     V+DT  LF      P KR  SLR LA  +L   IQ   + H+S ED
Sbjct: 1082 KDFRVINLMVPKDQVLDTVYLF----HMPRKRMISLRFLAWYFLDLKIQG--ETHDSIED 1135

Query: 520  ANACLQL 526
            A   LQL
Sbjct: 1136 ARTALQL 1142


>gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]
          Length = 1834

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 77/318 (24%), Positives = 119/318 (37%), Gaps = 46/318 (14%)

Query: 43   WPKMVTESCYF---PAQRGSACRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGY 99
            W       C F   P Q GS       PR +   SG  +S PR R   +   SP L++  
Sbjct: 1025 WQASPPHPCRFLLGPPQGGS-------PRGSHHTSGSSLSTPRSRGGTSQVGSPTLLSPA 1077

Query: 100  TDAKRTRVASSSQRSRGSKVGRQPGKTRNRSGMACKTTAT----TSSKRIVRRASLPSLS 155
              +K+ R  S    S+  + G Q GK R RS + C+          S  I    S P  S
Sbjct: 1078 VPSKQKRDRSILTLSK--EPGHQKGKER-RSVLECRNKGVLMFPEKSPSIDLTQSNPDHS 1134

Query: 156  LKKPIILRSSGCQVPTVLRRGYLQLFTEECLKFCASKQEAEEKALNEEKVAYDCSPNKNR 215
              +     S   +   V+    L L ++E L+   +K ++      EEK A + SP    
Sbjct: 1135 SSRSQKSSSKLNEEDEVI----LLLDSDEELELEQTKMKSISSDPLEEKKALEISPRSCE 1190

Query: 216  YLNVVLNTLKRLKGLTPSSMPGLSRAALYSRLQEFLLTQDQLKENGYPFPHPERPGGAVL 275
              +++     +     PS  P  S A L          +  L EN        R G   L
Sbjct: 1191 LFSIIDVDADQ----EPSQSPPRSEAVLQQE------DEGALPENRGSL---GRRGAPWL 1237

Query: 276  FTGQGKGPGDSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRSSQVAGG----RVSQ 331
            F  +   P ++S        T +LV ++    R + C     + + S +  G     V+Q
Sbjct: 1238 FCDRESSPSEAS-----TTDTSWLVPATPLASRSRDCS---SQTQISSLRSGLAVQAVTQ 1289

Query: 332  YTCCAAAPGSVGCQVAKQ 349
            +T  A+     G +VA++
Sbjct: 1290 HTPRASVGNREGNEVAQK 1307


>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
           sapiens]
          Length = 1031

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 19/43 (44%), Positives = 23/43 (53%)

Query: 101 DAKRTRVASSSQRSRGSKVGRQPGKTRNRSGMACKTTATTSSK 143
           D +R+R  S  +RSR S  G +  KT NRS    KT    SSK
Sbjct: 89  DRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGGESSK 131


>gi|224496106 small fragment nuclease [Homo sapiens]
          Length = 237

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 31/148 (20%)

Query: 399 VVDADMRVVYD---TFVKPDNEIVDYNTRF-------SGVTEADVAKTSITLPQVQAILL 448
           + D+D+ ++ +     +K  +E++D  + +       SG+T+A V +++ITL Q +   L
Sbjct: 67  ITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKA-VKESTITLQQAEYEFL 125

Query: 449 SFFSAQT-----ILIGHSLESDLLAL--------KLIHSTVVDTAVL-------FPHYLG 488
           SF   QT      L G+S+  D   L        K +H  ++D + +       +P    
Sbjct: 126 SFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYE 185

Query: 489 FPYKRSLRNLAADYLAQIIQDSQDGHNS 516
           F  K++  + A D +++ I++ Q   N+
Sbjct: 186 FAPKKAASHRALDDISESIKELQFYRNN 213


>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
          Length = 717

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 23/145 (15%)

Query: 16  PQMHKQASAFVDIQAEPQNRG-----------PAVPPAWPKMVTESCYFPAQRGSACRLP 64
           PQ+  Q+ +   +Q++P ++            P V      ++ E   FP +      +P
Sbjct: 482 PQLQLQSQSQPVLQSQPPSQPEDLSLAVLQPTPQVTQEQGHLLPERKDFPVESVKLTEVP 541

Query: 65  AAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSK-----V 119
             P LT  P         K KT   S S       T   R+R +SSS  S  S       
Sbjct: 542 VEPVLTVHPES-------KSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGS 594

Query: 120 GRQPGKTRNRSGMACKTTATTSSKR 144
               G + +RS  +  ++ + SS R
Sbjct: 595 SSSSGSSSSRSSSSSSSSTSGSSSR 619


>gi|98986457 host cell factor 1 [Homo sapiens]
          Length = 2035

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 17/154 (11%)

Query: 3   PSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCY--FPAQRGSA 60
           P+  P  S     P+    A+A   +Q   Q     +P A P   T +     P   GS+
Sbjct: 412 PTPNPVPSVPANPPKSPAPAAAAPAVQPLTQVGITLLPQAAPAPPTTTTIQVLPTVPGSS 471

Query: 61  CRLPAAPRLTERPSGVRISAPR---------KRKTIAHSSSPCLVTGYTDAKRTRVASSS 111
             +P A R    P+ ++++ P+          R       +P  VT        R+   +
Sbjct: 472 ISVPTAARTQGVPAVLKVTGPQATTGTPLVTMRPASQAGKAPVTVTSLPAG--VRMVVPT 529

Query: 112 QRSRGSKVGRQPGKTRNRSGMACKTTATTSSKRI 145
           Q ++G+ +G  P      SGMA    A  ++++I
Sbjct: 530 QSAQGTVIGSSP----QMSGMAALAAAAAATQKI 559


>gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens]
          Length = 729

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 103 KRTRVASSSQRSRGSKVGRQPGKTRNRSGMACKTTATTSSKRIVRRAS-LPSLSLKKPII 161
           K   + SSS R   S + R PG  R   G    TTA  +  R+V   S    + +  P++
Sbjct: 269 KNLSLVSSSSRGNTSTLRRGPGSRRKVPGQFSITTALNTLNRMVHSPSGRHMVEISTPVL 328

Query: 162 LRSSGCQVPT 171
           + SS   V T
Sbjct: 329 ISSSNPSVIT 338


>gi|50083281 KIAA1853 protein [Homo sapiens]
          Length = 611

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 55  AQRGSACRLPAAPRLTERPSGV---RISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSS 111
           A+R      P   R  + PS +   RI++ RKR    +  SP   +G   +  +  +SSS
Sbjct: 483 ARRRRRSYSPMRKRRRDSPSHLEARRITSARKRPIPYYRPSPSS-SGSLSSTSSWYSSSS 541

Query: 112 QRSRGSKVGRQPGKTRNRSGMACKTTATTSSK 143
            RS      R   ++R+R     +T++++SS+
Sbjct: 542 SRSASRSYSRSRSRSRSRRRSRTRTSSSSSSR 573


>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
           sapiens]
          Length = 674

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 38/170 (22%)

Query: 72  RPSGVRISAPRKRKTIAHSSSPCLVTGYTDAKRTRVAS----------------SSQRSR 115
           R  G R S    R    +S SP    GY   +R+R  S                SS RSR
Sbjct: 436 RSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSR 495

Query: 116 GS---KVGRQPGKTRNRSGMACKTTATTSSK-------------RIVRRASLPSLSLK-- 157
            S      R    TR+RS     + + + S+             ++ R A+ P++  K  
Sbjct: 496 SSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPAASPAVGEKLK 555

Query: 158 --KPIILRSSGCQVPTVLRRGYLQLFTEECL--KFCASKQEAEEKALNEE 203
             +P   + +G   P +  +  L+L  ++ L  +F A K+ A+EK + +E
Sbjct: 556 KTEPAAGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEKMIQQE 605


>gi|169213922 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 198

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 40  PPAWPKMVTESCYFPAQRGSACRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGY 99
           P AW +    SC      G   R P     T RP   R    R R  +   S+P     +
Sbjct: 62  PQAWAR----SC-----SGWPAREPTVAART-RPCSTR-GPRRSRMALRPRSAPSRAPAW 110

Query: 100 TDAKRTRVASSSQRSRGSKVGRQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLS 155
             A+R   +S+S+RSR   + R   +    S +   + A TS +   RR    S+S
Sbjct: 111 YTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPRTSSMS 166


>gi|169213920 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 198

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 40  PPAWPKMVTESCYFPAQRGSACRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGY 99
           P AW +    SC      G   R P     T RP   R    R R  +   S+P     +
Sbjct: 62  PQAWAR----SC-----SGWPAREPTVAART-RPCSTR-GPRRSRMALRPRSAPSRAPAW 110

Query: 100 TDAKRTRVASSSQRSRGSKVGRQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLS 155
             A+R   +S+S+RSR   + R   +    S +   + A TS +   RR    S+S
Sbjct: 111 YTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPRTSSMS 166


>gi|169214343 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 198

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 40  PPAWPKMVTESCYFPAQRGSACRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGY 99
           P AW +    SC      G   R P     T RP   R    R R  +   S+P     +
Sbjct: 62  PQAWAR----SC-----SGWPAREPTVAART-RPCSTR-GPRRSRMALRPRSAPSRAPAW 110

Query: 100 TDAKRTRVASSSQRSRGSKVGRQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLS 155
             A+R   +S+S+RSR   + R   +    S +   + A TS +   RR    S+S
Sbjct: 111 YTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPRTSSMS 166


>gi|169213300 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 198

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 40  PPAWPKMVTESCYFPAQRGSACRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLVTGY 99
           P AW +    SC      G   R P     T RP   R    R R  +   S+P     +
Sbjct: 62  PQAWAR----SC-----SGWPAREPTVAART-RPCSTR-GPRRSRMALRPRSAPSRAPAW 110

Query: 100 TDAKRTRVASSSQRSRGSKVGRQPGKTRNRSGMACKTTATTSSKRIVRRASLPSLS 155
             A+R   +S+S+RSR   + R   +    S +   + A TS +   RR    S+S
Sbjct: 111 YTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPHTSSMS 166


>gi|19923646 family with sequence similarity 126, member A [Homo
           sapiens]
          Length = 521

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 10/95 (10%)

Query: 77  RISAPRKRKTIAHSSSPCLVTGYTDAKRTRVASSSQRSRGSKVGRQPGKTRNRSGMACKT 136
           R ++   +  +++SS  C       + +  +  + +RS GSK G   GK +  +G +CK 
Sbjct: 354 RAASSTSQSGLSNSSHNC-------SNKPSIGKNHRRSGGSKTG---GKEKETTGESCKD 403

Query: 137 TATTSSKRIVRRASLPSLSLKKPIILRSSGCQVPT 171
                  +  +  +L  LSLK+  +  S     P+
Sbjct: 404 HFARKQTQRAQSENLELLSLKRLTLTTSQSLPKPS 438


>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
          Length = 365

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 37  PAVPPAWPKMVTESCYFPAQRGSACRLPAAPRLTERPSGVRISAPRKRKTIAHSSSPCLV 96
           PA PP  P     S        ++ R P AP    RPS +  S+P   +++     PC  
Sbjct: 269 PAAPPRRPPQSASSL------SASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGPPCAG 322

Query: 97  TGYTDA---KRTRVASSSQRSRGSKVGR 121
             +  A   +R+   +S +RS G+   R
Sbjct: 323 CPWPTAGPGRRSPGGTSPERSPGTARAR 350


>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
           sapiens]
          Length = 459

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 1   PLPSHQPAQSFGLWVPQMHKQASAFVDIQAEPQNRGPAVPPAWPKMVTESCYFPAQRGSA 60
           P P+   + S    VP+  + +   +    +P++  P  P A  +  +++   PA R  A
Sbjct: 168 PSPADPGSTSSATRVPRARRSSRRAL----QPRHAAPDAPGAPSRSTSQATPPPAPRFPA 223

Query: 61  CRLPAAPRLTER 72
            R P APRL  R
Sbjct: 224 SRRPGAPRLLSR 235


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,123,942
Number of Sequences: 37866
Number of extensions: 1062013
Number of successful extensions: 3302
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3237
Number of HSP's gapped (non-prelim): 90
length of query: 552
length of database: 18,247,518
effective HSP length: 107
effective length of query: 445
effective length of database: 14,195,856
effective search space: 6317155920
effective search space used: 6317155920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.