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Search of human proteins with 239743587
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743587 PREDICTED: hypothetical protein [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743587 PREDICTED: hypothetical protein [Homo sapiens] 475 e-134
gi|169173341 PREDICTED: hypothetical protein [Homo sapiens] 275 3e-74
gi|169172540 PREDICTED: hypothetical protein [Homo sapiens] 275 3e-74
gi|169212085 PREDICTED: similar to poly(A) binding protein inter... 35 0.043
gi|239752553 PREDICTED: similar to poly(A) binding protein inter... 35 0.056
gi|89041275 PREDICTED: similar to poly(A) binding protein intera... 35 0.056
gi|116517305 cysteine-rich protein 3 [Homo sapiens] 35 0.073
gi|62460633 RNA-binding motif protein 16 [Homo sapiens] 34 0.096
gi|55953117 ribosomal protein S6 kinase, 70kDa, polypeptide 2 [H... 34 0.13
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 33 0.16
gi|47132519 Ras association and pleckstrin homology domains 1 is... 33 0.16
gi|222080058 Smith-Magenis syndrome chromosome region, candidate... 33 0.16
gi|22538488 Smith-Magenis syndrome chromosome region, candidate ... 33 0.16
gi|28872805 myeloid translocation gene on chromosome 16 isoform ... 33 0.16
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 33 0.16
gi|40807465 zinc finger protein 341 [Homo sapiens] 33 0.16
gi|4504649 interleukin 15 receptor, alpha isoform 1 precursor [H... 33 0.28
gi|26787982 interleukin 15 receptor, alpha isoform 2 [Homo sapiens] 33 0.28
gi|239753123 PREDICTED: kelch-like 29 (Drosophila) [Homo sapiens] 33 0.28
gi|239748384 PREDICTED: hypothetical protein XP_002346651 [Homo ... 33 0.28
gi|239747686 PREDICTED: kelch-like 29 (Drosophila) [Homo sapiens] 33 0.28
gi|239742312 PREDICTED: hypothetical protein XP_002342488 [Homo ... 33 0.28
gi|239741555 PREDICTED: kelch repeat and BTB (POZ) domain contai... 33 0.28
gi|4502403 biglycan preproprotein [Homo sapiens] 32 0.36
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 32 0.48
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.48
gi|116292174 fidgetin-like 2 [Homo sapiens] 32 0.48
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 32 0.62
gi|20336305 B-cell CLL/lymphoma 11A isoform 1 [Homo sapiens] 32 0.62
gi|20336307 B-cell CLL/lymphoma 11A isoform 2 [Homo sapiens] 32 0.62
>gi|239743587 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 475 bits (1222), Expect = e-134
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MRLPRAAHVLSVFRSCGDSQSHHSAGRRSPDSPLALRYLTPAYLAQPPPPPSSSCVLPIQ 60
MRLPRAAHVLSVFRSCGDSQSHHSAGRRSPDSPLALRYLTPAYLAQPPPPPSSSCVLPIQ
Sbjct: 1 MRLPRAAHVLSVFRSCGDSQSHHSAGRRSPDSPLALRYLTPAYLAQPPPPPSSSCVLPIQ 60
Query: 61 PPAISPKGIFSGLGSQSINDLSGELSLTPPGTPVLQSRALMALKHCEARKRLKLPLESAS 120
PPAISPKGIFSGLGSQSINDLSGELSLTPPGTPVLQSRALMALKHCEARKRLKLPLESAS
Sbjct: 61 PPAISPKGIFSGLGSQSINDLSGELSLTPPGTPVLQSRALMALKHCEARKRLKLPLESAS 120
Query: 121 TLKEILASHCVCSFLAFNLPPRKDTVNKVPSWKQTAAFTRHQTFWHLDLALSSLQNRLEL 180
TLKEILASHCVCSFLAFNLPPRKDTVNKVPSWKQTAAFTRHQTFWHLDLALSSLQNRLEL
Sbjct: 121 TLKEILASHCVCSFLAFNLPPRKDTVNKVPSWKQTAAFTRHQTFWHLDLALSSLQNRLEL 180
Query: 181 LPLRAGESSANSEPGGPTLPPFVKSPEPLSKAASLPTQPFLSQLPDVSRRTQSASS 236
LPLRAGESSANSEPGGPTLPPFVKSPEPLSKAASLPTQPFLSQLPDVSRRTQSASS
Sbjct: 181 LPLRAGESSANSEPGGPTLPPFVKSPEPLSKAASLPTQPFLSQLPDVSRRTQSASS 236
>gi|169173341 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 275 bits (702), Expect = 3e-74
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 101 MALKHCEARKRLKLPLESASTLKEILASHCVCSFLAFNLPPRKDTVNKVPSWKQTAAFTR 160
MALKHCEARKRLKLPLESASTLKEILASHCVCSFLAFNLPPRKDTVNKVPSWKQTAAFTR
Sbjct: 1 MALKHCEARKRLKLPLESASTLKEILASHCVCSFLAFNLPPRKDTVNKVPSWKQTAAFTR 60
Query: 161 HQTFWHLDLALSSLQNRLELLPLRAGESSANSEPGGPTLPPFVKSPEPLSKAASLPTQPF 220
HQTFWHLDLALSSLQNRLELLPLRAGESSANSEPGGPTLPPFVKSPEPLSKAASLPTQPF
Sbjct: 61 HQTFWHLDLALSSLQNRLELLPLRAGESSANSEPGGPTLPPFVKSPEPLSKAASLPTQPF 120
Query: 221 LSQLPDVSRRTQSASS 236
LSQLPDVSRRTQSASS
Sbjct: 121 LSQLPDVSRRTQSASS 136
>gi|169172540 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 275 bits (702), Expect = 3e-74
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 101 MALKHCEARKRLKLPLESASTLKEILASHCVCSFLAFNLPPRKDTVNKVPSWKQTAAFTR 160
MALKHCEARKRLKLPLESASTLKEILASHCVCSFLAFNLPPRKDTVNKVPSWKQTAAFTR
Sbjct: 1 MALKHCEARKRLKLPLESASTLKEILASHCVCSFLAFNLPPRKDTVNKVPSWKQTAAFTR 60
Query: 161 HQTFWHLDLALSSLQNRLELLPLRAGESSANSEPGGPTLPPFVKSPEPLSKAASLPTQPF 220
HQTFWHLDLALSSLQNRLELLPLRAGESSANSEPGGPTLPPFVKSPEPLSKAASLPTQPF
Sbjct: 61 HQTFWHLDLALSSLQNRLELLPLRAGESSANSEPGGPTLPPFVKSPEPLSKAASLPTQPF 120
Query: 221 LSQLPDVSRRTQSASS 236
LSQLPDVSRRTQSASS
Sbjct: 121 LSQLPDVSRRTQSASS 136
>gi|169212085 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 516
Score = 35.4 bits (80), Expect = 0.043
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 18 DSQSHHSAG-----RRSPDSPLALRYLTPAYLAQP--PPPPSSSCVLPIQPPAISPKG 68
DS + AG R P P A +L P L QP PPP + C +P P SP G
Sbjct: 65 DSGGPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSPPG 122
>gi|239752553 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 457
Score = 35.0 bits (79), Expect = 0.056
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 27 RRSPDSPLALRYLTPAYLAQP--PPPPSSSCVLPIQPPAISPKG 68
R P P A +L P L QP PPP + C +P P SP G
Sbjct: 20 RHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSPPG 63
>gi|89041275 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 488
Score = 35.0 bits (79), Expect = 0.056
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 27 RRSPDSPLALRYLTPAYLAQP--PPPPSSSCVLPIQPPAISPKG 68
R P P A +L P L QP PPP + C +P P SP G
Sbjct: 51 RHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSPPG 94
>gi|116517305 cysteine-rich protein 3 [Homo sapiens]
Length = 204
Score = 34.7 bits (78), Expect = 0.073
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 48 PPPPSSSCVLPIQPPAISPKGIFSGL--GSQS---INDLSGELSLTPP-GTPVLQSRALM 101
PP PS C P+ P + SP +GL G +S + +GE SL P G PV + +M
Sbjct: 79 PPTPSPGCTTPLSPSSFSPPRPRTGLPQGKKSPPHMKTFTGETSLCPGCGEPVYFAEKVM 138
Query: 102 AL 103
+L
Sbjct: 139 SL 140
>gi|62460633 RNA-binding motif protein 16 [Homo sapiens]
Length = 1271
Score = 34.3 bits (77), Expect = 0.096
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 45 AQPPPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTPPGTP 93
AQPP ++S +L IQPP++S G+ +I + SG + + PP P
Sbjct: 843 AQPPNILNNSGILGIQPPSVSNSSGLLGVLPPNIPNNSGLVGVQPPNVP 891
Score = 30.4 bits (67), Expect = 1.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 46 QPPPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTPPGTP 93
+P SSS ++ QPP I G+ S+++ SG L + PP P
Sbjct: 830 RPSNVSSSSGIIAAQPPNILNNSGILGIQPPSVSNSSGLLGVLPPNIP 877
Score = 27.7 bits (60), Expect = 9.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 46 QPPPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTPPGTP 93
QPP +SS +L + PP I G+ ++ + G L PP P
Sbjct: 858 QPPSVSNSSGLLGVLPPNIPNNSGLVGVQPPNVPNTPGLLGTQPPAGP 905
>gi|55953117 ribosomal protein S6 kinase, 70kDa, polypeptide 2 [Homo
sapiens]
Length = 482
Score = 33.9 bits (76), Expect = 0.13
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 27 RRSPDSPLALRYLTPAYLAQPPPPPSSSCVLPIQPPAISPK 67
R SP P P L PPPPPS++ LPI+PP+ + K
Sbjct: 434 RPSPSLPEPTELPLPPLL--PPPPPSTTAPLPIRPPSGTKK 472
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 33.5 bits (75), Expect = 0.16
Identities = 57/219 (26%), Positives = 82/219 (37%), Gaps = 25/219 (11%)
Query: 29 SPDSPLALRYLTPAYLAQPPPPPSSSCVLPIQPP----AISPKGIFSGLGSQSINDLSGE 84
SP +P +L+ L P P S P+Q P I P + L S S+
Sbjct: 347 SPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSP 406
Query: 85 LSL------TPPGTPVLQ-SRALMALKHCEARKRLKLPLESASTLKEILASHCVCSFLAF 137
L+L T G+P LQ + + + + + + L P AST + S A
Sbjct: 407 LALSSLQATTSLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLSLPA- 465
Query: 138 NLPPRKDTVNKVPSWKQTAAFTRHQTFWHLDLALSSLQNRLELL---PLRAGES----SA 190
PP + +++ S ++ T H LA S Q L L PL S S
Sbjct: 466 -SPPLQTSLSPAVS-PLSSPLTIHPLQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSL 523
Query: 191 NSEPGGPTLPPFVK----SPEPLSKAASLPTQPFLSQLP 225
+ P T PP +P PL A++ T P L P
Sbjct: 524 QTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPP 562
Score = 30.8 bits (68), Expect = 1.1
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 29 SPDSPLALRYLTPAYLAQPP--PPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELS 86
SP +P AL +L Q P PPPS P PPA P + SQ+ L+
Sbjct: 649 SPQAPNALA----VHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPL 704
Query: 87 LTPPGTP 93
PP P
Sbjct: 705 QVPPSPP 711
Score = 30.0 bits (66), Expect = 1.8
Identities = 47/183 (25%), Positives = 66/183 (36%), Gaps = 33/183 (18%)
Query: 40 TPAYLAQPPPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTPPGTPVLQSRA 99
TP PP PP + LP+ PP+ S L S PP TP Q+
Sbjct: 325 TPLPATLPPSPPL-ATPLPLAPPSPSAPPSLQTLPS-------------PPATPPSQAPP 370
Query: 100 LMALKHCEARKRLKLPLESASTLKEILASHCVCSFLAFNLPPRKDTVNKVPSWKQTAAFT 159
M +A L+ T+ I H + S + PP ++ + + + T
Sbjct: 371 SMTTPPMQAPPSLQ-------TIPPIQVPHSLTS-PSLQAPPSPLALSSLQATTSLGSPT 422
Query: 160 RHQTFWHLDLALSSLQNRLELLPLRAGESSANSEPGGPTLPPFVKSPEPLSKAASLPTQP 219
T H L +S Q + L + A++ P P L PLS AS P Q
Sbjct: 423 LQAT--HSFLTMSPRQTQAS---LTSPSRPASTPPDSPPL------QAPLSLPASPPLQT 471
Query: 220 FLS 222
LS
Sbjct: 472 SLS 474
Score = 28.1 bits (61), Expect = 6.9
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 30 PDSPLALRYLTPAYLAQPPPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTP 89
P +P AL TP A P PP S P P A P + Q+ L+ L P
Sbjct: 786 PQAPPALA--TPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVP 843
Query: 90 PGTP 93
P P
Sbjct: 844 PSPP 847
>gi|47132519 Ras association and pleckstrin homology domains 1 isoform
1 [Homo sapiens]
Length = 1250
Score = 33.5 bits (75), Expect = 0.16
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 22/102 (21%)
Query: 47 PPPPPSSSCVLPIQPPA------------ISPKGIFSGLGSQSINDLSGELSLTPPGTPV 94
PPPPP SS V P PP+ SP SG + + S PP TP
Sbjct: 917 PPPPPESSLVFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKPPPTPQ 976
Query: 95 LQS--RALMALKHCEARK--------RLKLPLESASTLKEIL 126
S ++ +H E ++ + P ES S KE L
Sbjct: 977 RNSSIKSSSGAEHPEPKRPSVDSLVSKFTPPAESGSPSKETL 1018
Score = 27.7 bits (60), Expect = 9.0
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 15/71 (21%)
Query: 44 LAQPPPPPSSSCVLPIQPPAISPKGIFSGLGS--------------QSINDLSGELSLTP 89
L PPPPP P PP P GS Q+ + SG L P
Sbjct: 628 LPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAPMFVKYSTITRLQNASQHSGAL-FKP 686
Query: 90 PGTPVLQSRAL 100
P PV+QS+++
Sbjct: 687 PTPPVMQSQSV 697
>gi|222080058 Smith-Magenis syndrome chromosome region, candidate 7
isoform 2 [Homo sapiens]
Length = 465
Score = 33.5 bits (75), Expect = 0.16
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 34 LALRYLTPAYLAQPPPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTPPGTP 93
L+L TP +PPP S VLP+ P + +P+G +++ +++ +LS P
Sbjct: 82 LSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEG-----PAETDPEVTPQLSSPAPLCL 136
Query: 94 VLQSRALMALKHCEARKRLKLPLESASTLKEI 125
LQ R L+A + R R+ +P + K++
Sbjct: 137 TLQER-LLAFE----RDRVTIPAAQVALAKQL 163
>gi|22538488 Smith-Magenis syndrome chromosome region, candidate 7
isoform 1 [Homo sapiens]
Length = 454
Score = 33.5 bits (75), Expect = 0.16
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 34 LALRYLTPAYLAQPPPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTPPGTP 93
L+L TP +PPP S VLP+ P + +P+G +++ +++ +LS P
Sbjct: 71 LSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEG-----PAETDPEVTPQLSSPAPLCL 125
Query: 94 VLQSRALMALKHCEARKRLKLPLESASTLKEI 125
LQ R L+A + R R+ +P + K++
Sbjct: 126 TLQER-LLAFE----RDRVTIPAAQVALAKQL 152
>gi|28872805 myeloid translocation gene on chromosome 16 isoform
MTG16b [Homo sapiens]
Length = 567
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 30 PDSPLALRYLTPAYLAQPPPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTP 89
PDSP ++ + PPPP ++ +PP+ +P + +G S S ++G TP
Sbjct: 2 PDSPAEVKTQPRSTPPSMPPPPPAASQGATRPPSFTPHTLMNG-SSHSPTAING-APCTP 59
Query: 90 PG---TPVLQSRALMALKH----CEARKRLKL 114
G P S A ++ +H C AR+ KL
Sbjct: 60 NGFSNGPATSSTASLSTQHLPPACGARQLSKL 91
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 33.5 bits (75), Expect = 0.16
Identities = 53/195 (27%), Positives = 74/195 (37%), Gaps = 26/195 (13%)
Query: 39 LTPAYLAQPPPPPSS--SCVLPI--QPPAISPKGIFSGLGSQS-INDLSGELSLTPPGTP 93
+ P ++ PPPPS C P PPA +P + +Q+ + S L L PP P
Sbjct: 2476 ILPVHILPSPPPPSQIPPCSSPACTPPPACTPPPAHTPPPAQTCLVTPSSPLLLGPPSVP 2535
Query: 94 VLQSRALMALKHCEARKRLKLPLESASTLKEILASHCVCSFLAFNLPPRKD----TVNKV 149
+ S + L + L S +L+ LAS + +L P KD V +
Sbjct: 2536 ISASVTNLPLGLRPEAELCAQALASPESLE--LASVASSETSSLSLVPPKDLLPVAVEIL 2593
Query: 150 PSWKQTAAFTRHQTFWHLDLALSSLQNRLE-----------LLPLRAGESS--ANSEPGG 196
P ++ + T L L S+ N E L L GE SE G
Sbjct: 2594 PVSEKNLSLTPSAP--SLTLEAGSIPNGQEQEAPDSAEGTTLTVLPEGEELPLCVSESNG 2651
Query: 197 PTLPPFVKSPEPLSK 211
LPP S EPL +
Sbjct: 2652 LELPPSAASDEPLQE 2666
>gi|40807465 zinc finger protein 341 [Homo sapiens]
Length = 847
Score = 33.5 bits (75), Expect = 0.16
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 14/53 (26%)
Query: 41 PAYLAQPPPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTPPGTP 93
P+YL QPPPPP LP PP P LG PPG P
Sbjct: 172 PSYLTQPPPPPPPPPPLPPPPPPQPPPPPPQSLG--------------PPGRP 210
>gi|4504649 interleukin 15 receptor, alpha isoform 1 precursor [Homo
sapiens]
Length = 267
Score = 32.7 bits (73), Expect = 0.28
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 41 PAYLAQPPPPPSSSCVLPI--QPPAISPKGIFSGLGSQSINDLSGELSLTPPGTPVLQSR 98
PA + Q P PPS+ + QP ++SP G S S N+ + + PG+ ++ S+
Sbjct: 97 PALVHQRPAPPSTVTTAGVTPQPESLSPSGKEPAASSPSSNNTAATTAAIVPGSQLMPSK 156
Query: 99 A 99
+
Sbjct: 157 S 157
>gi|26787982 interleukin 15 receptor, alpha isoform 2 [Homo sapiens]
Length = 231
Score = 32.7 bits (73), Expect = 0.28
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 41 PAYLAQPPPPPSSSCVLPI--QPPAISPKGIFSGLGSQSINDLSGELSLTPPGTPVLQSR 98
PA + Q P PPS+ + QP ++SP G S S N+ + + PG+ ++ S+
Sbjct: 61 PALVHQRPAPPSTVTTAGVTPQPESLSPSGKEPAASSPSSNNTAATTAAIVPGSQLMPSK 120
Query: 99 A 99
+
Sbjct: 121 S 121
>gi|239753123 PREDICTED: kelch-like 29 (Drosophila) [Homo sapiens]
Length = 875
Score = 32.7 bits (73), Expect = 0.28
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 44 LAQPPPPPSSSCVLPIQPPAIS-PKGIFSGLGSQSINDLS-GELSLTPPGTPVLQSRALM 101
L PPPP S LP PA + P S G Q + + G+ T PG P + L
Sbjct: 261 LLPPPPPAQPSATLPSGAPATNGPPTTDSAHGLQMLRTIGVGKYEFTDPGHPREMLKELN 320
Query: 102 ALKHCEARKRLKLPLE 117
+ +A LK+ +E
Sbjct: 321 QQRRAKAFTDLKIVVE 336
>gi|239748384 PREDICTED: hypothetical protein XP_002346651 [Homo
sapiens]
Length = 246
Score = 32.7 bits (73), Expect = 0.28
Identities = 32/100 (32%), Positives = 38/100 (38%), Gaps = 20/100 (20%)
Query: 10 LSVFRSCGDSQSHHSAGRRSPDSPLALRYLTPAYLAQPPPPPSSSCVLPIQPPAISPKGI 69
LS SCG + A +P+ P A QPPPPPS SC QP
Sbjct: 163 LSTLPSCGPEKP---ARIENPERPCRRTPAPGAPRLQPPPPPSCSC----QP-------- 207
Query: 70 FSGLGSQSINDLSGELSLTP-PGTPVLQSRALMALKHCEA 108
GS+S L E P P P + RA A + A
Sbjct: 208 ----GSRSSECLEPERRAPPRPANPAKRERAAAAPRSAPA 243
>gi|239747686 PREDICTED: kelch-like 29 (Drosophila) [Homo sapiens]
Length = 702
Score = 32.7 bits (73), Expect = 0.28
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 44 LAQPPPPPSSSCVLPIQPPAIS-PKGIFSGLGSQSINDLS-GELSLTPPGTPVLQSRALM 101
L PPPP S LP PA + P S G Q + + G+ T PG P + L
Sbjct: 261 LLPPPPPAQPSATLPSGAPATNGPPTTDSAHGLQMLRTIGVGKYEFTDPGHPREMLKELN 320
Query: 102 ALKHCEARKRLKLPLE 117
+ +A LK+ +E
Sbjct: 321 QQRRAKAFTDLKIVVE 336
>gi|239742312 PREDICTED: hypothetical protein XP_002342488 [Homo
sapiens]
Length = 246
Score = 32.7 bits (73), Expect = 0.28
Identities = 32/100 (32%), Positives = 38/100 (38%), Gaps = 20/100 (20%)
Query: 10 LSVFRSCGDSQSHHSAGRRSPDSPLALRYLTPAYLAQPPPPPSSSCVLPIQPPAISPKGI 69
LS SCG + A +P+ P A QPPPPPS SC QP
Sbjct: 163 LSTLPSCGPEKP---ARIENPERPCRRTPAPGAPRLQPPPPPSCSC----QP-------- 207
Query: 70 FSGLGSQSINDLSGELSLTP-PGTPVLQSRALMALKHCEA 108
GS+S L E P P P + RA A + A
Sbjct: 208 ----GSRSSECLEPERRAPPRPANPAKRERAAAAPRSAPA 243
>gi|239741555 PREDICTED: kelch repeat and BTB (POZ) domain
containing 9 [Homo sapiens]
Length = 875
Score = 32.7 bits (73), Expect = 0.28
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 44 LAQPPPPPSSSCVLPIQPPAIS-PKGIFSGLGSQSINDLS-GELSLTPPGTPVLQSRALM 101
L PPPP S LP PA + P S G Q + + G+ T PG P + L
Sbjct: 261 LLPPPPPAQPSATLPSGAPATNGPPTTDSAHGLQMLRTIGVGKYEFTDPGHPREMLKELN 320
Query: 102 ALKHCEARKRLKLPLE 117
+ +A LK+ +E
Sbjct: 321 QQRRAKAFTDLKIVVE 336
>gi|4502403 biglycan preproprotein [Homo sapiens]
Length = 368
Score = 32.3 bits (72), Expect = 0.36
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 29 SPDSPLALRYLTPAYLAQPPPP-PSSSCVLPIQPPAIS--PKGIFSGLGSQSINDLSG-- 83
SP L Y++ +L + PP PSS L I I PKG+FSGL + + ++ G
Sbjct: 135 SPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 194
Query: 84 -ELSLTPPGTPVLQSRALMALKHCEARKRLKLPLESASTLKEILASH 129
E S PG L L+ EA K +P + TL E+ H
Sbjct: 195 LENSGFEPG--AFDGLKLNYLRISEA-KLTGIPKDLPETLNELHLDH 238
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 32.0 bits (71), Expect = 0.48
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 33 PLALRYLTPAYLAQPPPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTPPGT 92
PLAL +P + +PPP P+ + P PP SP G + + + G L P
Sbjct: 749 PLALG--SPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGG-LPAAPLAG 805
Query: 93 PVLQSRAL 100
P L +R L
Sbjct: 806 PALPARRL 813
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 32.0 bits (71), Expect = 0.48
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 32 SPLALRYLTPAYLAQP-PPPPSSSCVLPIQPPAISPKGIFSGLGS---QSINDLSGELSL 87
S L + TP LA P P P S LP PPA P + LGS Q+ + L
Sbjct: 328 SSLTCQLATPLPLAPPSPSAPPSLQTLP-SPPATPPSQATTSLGSPTLQATHSFLPSPPL 386
Query: 88 TPPGTPVLQSRALMALKHCEA 108
+P TP Q+ +AL +A
Sbjct: 387 SPLATPPPQAPPALALPPLQA 407
Score = 30.8 bits (68), Expect = 1.1
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 29 SPDSPLALRYLTPAYLAQPP--PPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELS 86
SP +P AL +L Q P PPPS P PPA P + SQ+ L+
Sbjct: 424 SPQAPNALA----VHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPL 479
Query: 87 LTPPGTP 93
PP P
Sbjct: 480 QVPPSPP 486
Score = 28.1 bits (61), Expect = 6.9
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 30 PDSPLALRYLTPAYLAQPPPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTP 89
P +P AL TP A P PP S P P A P + Q+ L+ L P
Sbjct: 517 PQAPPALA--TPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVP 574
Query: 90 PGTP 93
P P
Sbjct: 575 PSPP 578
>gi|116292174 fidgetin-like 2 [Homo sapiens]
Length = 653
Score = 32.0 bits (71), Expect = 0.48
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 38 YLTPAYLAQP----PPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTPPGTP 93
YL P Y AQ PPPP ++ + P PP P + G +L PP P
Sbjct: 166 YLAPGYCAQTGAALPPPPPAALLQPPPPPGYGPSAPLYNYPAGGYAAQPGYGALPPPPGP 225
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 31.6 bits (70), Expect = 0.62
Identities = 49/196 (25%), Positives = 69/196 (35%), Gaps = 35/196 (17%)
Query: 29 SPDSPLALRYLTPAYLAQPP-------PPPSSSCVLPIQPPAISPKGIFSGLGSQSINDL 81
SP PL L+ L A PP PP + PPA P Q++
Sbjct: 956 SPQKPLDLKQLKQRAAAIPPIVTKVHEPPREDAAPTKPAPPAPPPP--------QNLQPE 1007
Query: 82 SGELSLTPPGTPVLQSRALMALKHCEARKRLKLPLESASTLKEILASHCVCSFLAFNLPP 141
S + P +P +SR+ EA K + P +A K C S L F +PP
Sbjct: 1008 S-DAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTSGLPFPVPP 1066
Query: 142 RKDTVNKVPSWKQTAAFTRHQTFWHLDLALSSLQNRLELLPLRAGESSANSEPGGPTLPP 201
R + + P +AF+ L L L +LP PP
Sbjct: 1067 R-EVIKASPHAPDPSAFSYAPPGHPLPLGLHDTAR--PVLPR----------------PP 1107
Query: 202 FVKSPEPLSKAASLPT 217
+ +P PL +A P+
Sbjct: 1108 TISNPPPLISSAKHPS 1123
>gi|20336305 B-cell CLL/lymphoma 11A isoform 1 [Homo sapiens]
Length = 835
Score = 31.6 bits (70), Expect = 0.62
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 24 SAGRRSPDSPLALRYLT---PAYLAQPPPPPSSSCVLPIQPPAISPKGIFSG 72
S GR SP L + P +LA PP PP S P QPP S F G
Sbjct: 332 SPGRPSPMQRLLQPFQPGSKPPFLATPPLPPLQSAPPPSQPPVKSKSCEFCG 383
>gi|20336307 B-cell CLL/lymphoma 11A isoform 2 [Homo sapiens]
Length = 773
Score = 31.6 bits (70), Expect = 0.62
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 24 SAGRRSPDSPLALRYLT---PAYLAQPPPPPSSSCVLPIQPPAISPKGIFSG 72
S GR SP L + P +LA PP PP S P QPP S F G
Sbjct: 332 SPGRPSPMQRLLQPFQPGSKPPFLATPPLPPLQSAPPPSQPPVKSKSCEFCG 383
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,406,902
Number of Sequences: 37866
Number of extensions: 617908
Number of successful extensions: 5295
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 4737
Number of HSP's gapped (non-prelim): 747
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.