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Search of human proteins with 239743064
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743064 PREDICTED: hypothetical protein XP_002342749 [Homo
sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743064 PREDICTED: hypothetical protein XP_002342749 [Homo ... 377 e-105
gi|239749039 PREDICTED: hypothetical protein XP_002346890 [Homo ... 374 e-104
gi|239508708 PREDICTED: similar to hCG1998993 [Homo sapiens] 374 e-104
gi|239754483 PREDICTED: similar to FLJ00049 protein [Homo sapiens] 367 e-102
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 36 0.020
gi|148833494 interferon regulatory factor 5 isoform d [Homo sapi... 35 0.044
gi|189181750 human immunodeficiency virus type I enhancer bindin... 33 0.099
gi|116089331 human immunodeficiency virus type I enhancer bindin... 33 0.099
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 33 0.17
gi|154816198 transcription elongation factor B polypeptide 3C-li... 33 0.17
gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo sap... 33 0.17
gi|156938279 transcription elongation factor B polypeptide 3C [H... 33 0.17
gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo sap... 33 0.17
gi|156416026 zinc finger protein 219 [Homo sapiens] 32 0.29
gi|156415998 zinc finger protein 219 [Homo sapiens] 32 0.29
gi|156415996 zinc finger protein 219 [Homo sapiens] 32 0.29
gi|238776840 patatin-like phospholipase domain containing 1 isof... 32 0.38
gi|224589138 patatin-like phospholipase domain containing 1 isof... 32 0.38
gi|224593249 patatin-like phospholipase domain containing 1 isof... 32 0.38
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 32 0.38
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 31 0.49
gi|54607077 ankyrin repeat domain 57 [Homo sapiens] 31 0.49
gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens] 31 0.64
gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo ... 30 0.84
gi|20986488 YY1-associated protein isoform 2 [Homo sapiens] 30 0.84
gi|20986490 YY1-associated protein isoform 3 [Homo sapiens] 30 0.84
gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ... 30 1.1
gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ... 30 1.1
gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ... 30 1.1
gi|40255251 hypothetical protein LOC131408 [Homo sapiens] 30 1.1
>gi|239743064 PREDICTED: hypothetical protein XP_002342749 [Homo
sapiens]
Length = 177
Score = 377 bits (968), Expect = e-105
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSLVRLS 60
MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSLVRLS
Sbjct: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSLVRLS 60
Query: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
Query: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
>gi|239749039 PREDICTED: hypothetical protein XP_002346890 [Homo
sapiens]
Length = 177
Score = 374 bits (961), Expect = e-104
Identities = 176/177 (99%), Positives = 176/177 (99%)
Query: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSLVRLS 60
MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRS GDGSLVRLS
Sbjct: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
Query: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
Query: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
>gi|239508708 PREDICTED: similar to hCG1998993 [Homo sapiens]
Length = 177
Score = 374 bits (961), Expect = e-104
Identities = 176/177 (99%), Positives = 176/177 (99%)
Query: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSLVRLS 60
MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRS GDGSLVRLS
Sbjct: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
Query: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
Query: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
>gi|239754483 PREDICTED: similar to FLJ00049 protein [Homo sapiens]
Length = 177
Score = 367 bits (941), Expect = e-102
Identities = 174/177 (98%), Positives = 174/177 (98%)
Query: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSLVRLS 60
MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRS GDGSLVRLS
Sbjct: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
Query: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
ECWPDWQRGGERKN GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61 ECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
Query: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
VPQGSALRLCPGTPG AHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 35.8 bits (81), Expect = 0.020
Identities = 33/100 (33%), Positives = 36/100 (36%), Gaps = 29/100 (29%)
Query: 75 PGSEEKPLQPSAW--PGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPG 132
PGS P+ P PGI P P +PP AA P G
Sbjct: 240 PGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPS--------------------AG 279
Query: 133 TPGCAHVGASRS----LPAMRMRCPGTSLLQL---GPVGL 165
TPG H G S P M PG S +QL GP GL
Sbjct: 280 TPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGL 319
>gi|148833494 interferon regulatory factor 5 isoform d [Homo
sapiens]
Length = 514
Score = 34.7 bits (78), Expect = 0.044
Identities = 24/103 (23%), Positives = 41/103 (39%)
Query: 20 FPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSLVRLSECWPDWQRGGERKNPGSEE 79
F G EE+ + +R+ P ++ + + + SL++ WP + + P +
Sbjct: 138 FGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVKWPPTLQPPTLRPPTLQP 197
Query: 80 KPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVP 122
LQP G P + PP EL + EP P+P
Sbjct: 198 PTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP 240
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 33.5 bits (75), Expect = 0.099
Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 75 PGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTP 134
P S +P PS G P P N + P+ C P PQ SA P P
Sbjct: 1962 PVSPRRPWSPSKEAGSRP--PLARKHSLTKNDSSPQRC----SPAREPQASA----PSPP 2011
Query: 135 GCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSR 170
G HV R + A+ G+ LQL P+ LC L R
Sbjct: 2012 GL-HVDPGRGMGALPC---GSPRLQLSPLTLCPLGR 2043
Score = 29.3 bits (64), Expect = 1.9
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 21 PQGPREEQSKREERVEPYVACDIGLSAS----RSLGDGSLVRLSECWPDWQRG--GERKN 74
PQG R QS P + SA+ RS G L S +P R GE +
Sbjct: 2318 PQGRRAAQSWSPRLESPRAPTNPEPSATPPLDRSSSVGCLAEASARFPARTRNLSGEPRT 2377
Query: 75 PGSEEKPLQPSAWPGINPLQPQEVVPPQA 103
KP S P +P QP++ VPP A
Sbjct: 2378 RQDSPKP-SGSGEPRAHPHQPEDRVPPNA 2405
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 33.5 bits (75), Expect = 0.099
Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 75 PGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTP 134
P S +P PS G P P N + P+ C P PQ SA P P
Sbjct: 1962 PVSPRRPWSPSKEAGSRP--PLARKHSLTKNDSSPQRC----SPAREPQASA----PSPP 2011
Query: 135 GCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSR 170
G HV R + A+ G+ LQL P+ LC L R
Sbjct: 2012 GL-HVDPGRGMGALPC---GSPRLQLSPLTLCPLGR 2043
Score = 29.3 bits (64), Expect = 1.9
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 21 PQGPREEQSKREERVEPYVACDIGLSAS----RSLGDGSLVRLSECWPDWQRG--GERKN 74
PQG R QS P + SA+ RS G L S +P R GE +
Sbjct: 2319 PQGRRAAQSWSPRLESPRAPTNPEPSATPPLDRSSSVGCLAEASARFPARTRNLSGEPRT 2378
Query: 75 PGSEEKPLQPSAWPGINPLQPQEVVPPQA 103
KP S P +P QP++ VPP A
Sbjct: 2379 RQDSPKP-SGSGEPRAHPHQPEDRVPPNA 2406
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 32.7 bits (73), Expect = 0.17
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 75 PGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTE-PRPVPQGSALRLCP 131
PG + PL+P + P PL P +PP + + AV + P P P L+ P
Sbjct: 855 PGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFPP 912
Score = 26.9 bits (58), Expect = 9.3
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 81 PLQPSAWPGINPLQPQEVVPPQAANKA--VPELCLWMTEPRPVPQGSALRLCPGTP--GC 136
P P PGI +Q Q VPP A+N A P P+ P L P P
Sbjct: 825 PQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSST 884
Query: 137 AHVGASRSLPAMRMRCPGTSLLQL 160
+ AS S + R+ P S QL
Sbjct: 885 SSAVASSSETSSRLPAPTPSDFQL 908
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 32.7 bits (73), Expect = 0.17
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 64 PDWQRGGERKNPGSEEK-PLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVP 122
P+ +R R PG + P PS P +P+ ++ P T P P+P
Sbjct: 126 PEHRRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPT----RTAPLPMP 181
Query: 123 QGSALRLCPGTPGCAHVGASRSLPAMRMRCPG 154
+G + PG H A++ P + C G
Sbjct: 182 EGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQG 213
>gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo
sapiens]
Length = 731
Score = 32.7 bits (73), Expect = 0.17
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 38 YVACDIGLSASRSLGDGSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQE 97
Y D G S + GD L+ L + DW + P + P+A+ +E
Sbjct: 35 YTGAD-GQQVSLAEGDRFLL-LRKTNSDWWLARRLEAPSTSRPIFVPAAY------MIEE 86
Query: 98 VVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSL 157
+P Q+ +P LW P+ + GS L P A + + P R C S
Sbjct: 87 SIPSQSPTTVIPGQLLWTPGPK-LFHGSLEELSQALPSRAQASSEQPPPLPRKMCRSVST 145
Query: 158 LQLGP 162
L P
Sbjct: 146 DNLSP 150
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 32.7 bits (73), Expect = 0.17
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 64 PDWQRGGERKNPGSEEK-PLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVP 122
P+ +R R PG + P PS P +P+ ++ P T P P+P
Sbjct: 126 PEHRRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPT----RTAPLPMP 181
Query: 123 QGSALRLCPGTPGCAHVGASRSLPAMRMRCPG 154
+G + PG H A++ P + C G
Sbjct: 182 EGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQG 213
>gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo
sapiens]
Length = 640
Score = 32.7 bits (73), Expect = 0.17
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 38 YVACDIGLSASRSLGDGSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQE 97
Y D G S + GD L+ L + DW + P + P+A+ +E
Sbjct: 35 YTGAD-GQQVSLAEGDRFLL-LRKTNSDWWLARRLEAPSTSRPIFVPAAY------MIEE 86
Query: 98 VVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSL 157
+P Q+ +P LW P+ + GS L P A + + P R C S
Sbjct: 87 SIPSQSPTTVIPGQLLWTPGPK-LFHGSLEELSQALPSRAQASSEQPPPLPRKMCRSVST 145
Query: 158 LQLGP 162
L P
Sbjct: 146 DNLSP 150
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.0 bits (71), Expect = 0.29
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 76 GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPG 135
G+ E+PL +A P QPQ PPQ ++VP+ EP P P+ R TP
Sbjct: 213 GAPERPL--AATSAAPPPQPQPQPPPQPEPRSVPQ-----PEPEPEPE----REATPTPA 261
Query: 136 CAHVGASRSLPAMRMRCPGTSLLQ 159
A + P R + G S Q
Sbjct: 262 PAAPEEPPAPPEFRCQVCGQSFTQ 285
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.0 bits (71), Expect = 0.29
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 76 GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPG 135
G+ E+PL +A P QPQ PPQ ++VP+ EP P P+ R TP
Sbjct: 213 GAPERPL--AATSAAPPPQPQPQPPPQPEPRSVPQ-----PEPEPEPE----REATPTPA 261
Query: 136 CAHVGASRSLPAMRMRCPGTSLLQ 159
A + P R + G S Q
Sbjct: 262 PAAPEEPPAPPEFRCQVCGQSFTQ 285
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.0 bits (71), Expect = 0.29
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 76 GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPG 135
G+ E+PL +A P QPQ PPQ ++VP+ EP P P+ R TP
Sbjct: 213 GAPERPL--AATSAAPPPQPQPQPPPQPEPRSVPQ-----PEPEPEPE----REATPTPA 261
Query: 136 CAHVGASRSLPAMRMRCPGTSLLQ 159
A + P R + G S Q
Sbjct: 262 PAAPEEPPAPPEFRCQVCGQSFTQ 285
>gi|238776840 patatin-like phospholipase domain containing 1 isoform
3 [Homo sapiens]
Length = 532
Score = 31.6 bits (70), Expect = 0.38
Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 73 KNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWM---TEPRPVPQGSALRL 129
K P S P+ PG++PL PQ+ V P + P L T PRP L
Sbjct: 379 KPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGS----PARSLHSQAPTSPRP-------SL 427
Query: 130 CPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLL 168
P T G SL A + P L Q P + LL
Sbjct: 428 GPSTVGAPQTLPRSSLSAFPAQPPVEELGQEQPQAVALL 466
>gi|224589138 patatin-like phospholipase domain containing 1 isoform
2 [Homo sapiens]
Length = 446
Score = 31.6 bits (70), Expect = 0.38
Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 73 KNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWM---TEPRPVPQGSALRL 129
K P S P+ PG++PL PQ+ V P + P L T PRP L
Sbjct: 293 KPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGS----PARSLHSQAPTSPRP-------SL 341
Query: 130 CPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLL 168
P T G SL A + P L Q P + LL
Sbjct: 342 GPSTVGAPQTLPRSSLSAFPAQPPVEELGQEQPQAVALL 380
>gi|224593249 patatin-like phospholipase domain containing 1 isoform
1 [Homo sapiens]
Length = 437
Score = 31.6 bits (70), Expect = 0.38
Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 73 KNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWM---TEPRPVPQGSALRL 129
K P S P+ PG++PL PQ+ V P + P L T PRP L
Sbjct: 284 KPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGS----PARSLHSQAPTSPRP-------SL 332
Query: 130 CPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLL 168
P T G SL A + P L Q P + LL
Sbjct: 333 GPSTVGAPQTLPRSSLSAFPAQPPVEELGQEQPQAVALL 371
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 31.6 bits (70), Expect = 0.38
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 84 PSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPR-------PVPQGSALRLCPGTPGC 136
PSA P P Q + P +A++A+ M P+ P P + L + +PG
Sbjct: 1560 PSA-PNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGA 1618
Query: 137 AHVGASRSLPAMRM---RCPGTSLLQLGPV 163
A V AS P M PGTSL PV
Sbjct: 1619 APVLASSQTPVPVMAPSSTPGTSLASASPV 1648
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 31.2 bits (69), Expect = 0.49
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 74 NPGSEEKPLQPSAWPGINPLQP-QEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPG 132
+P S P +P P + PLQP PP A C T P PVP PG
Sbjct: 270 SPTSRWAPRRPPPPPPVLPLQPCSPAQPPVLPALAPAPACPLPTSP-PVPAPHVTPHAPG 328
Query: 133 TPGCAHVGASRSLPAMRMRCPGTSL 157
P H + R+ CP L
Sbjct: 329 PPD--HPNQPPMMTCERLPCPTAGL 351
>gi|54607077 ankyrin repeat domain 57 [Homo sapiens]
Length = 525
Score = 31.2 bits (69), Expect = 0.49
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 19 EFPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSLVRLSECWPDWQRGGERKNPGSE 78
E P GP +++ +R+ A + R LG+G + WP G RKN +
Sbjct: 104 EAPDGPAGPEAR--DRLPDAAAPESLPGQGRELGEGEPPAPAH-WPPLSAGARRKNSRRD 160
Query: 79 EKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQ-------GSALRL-- 129
+PL + PG P + E+ P + T RP Q GS+ +L
Sbjct: 161 VQPLPRTPAPG--PSEDLELPPHGCEEADRGSSLVGATAQRPARQNLRDLVMGSSPQLKR 218
Query: 130 --CPG--TPGCAHVG 140
CPG +PG + G
Sbjct: 219 SVCPGGSSPGSSSGG 233
>gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens]
Length = 504
Score = 30.8 bits (68), Expect = 0.64
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 20 FPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSLVRLSECWPDWQRGGERKNPGSEE 79
F G EE+ + +R+ P ++ + + + SL++ WP P +
Sbjct: 138 FGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVKWP----------PTLQP 187
Query: 80 KPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVP 122
LQP G P + PP EL + EP P+P
Sbjct: 188 PTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP 230
>gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo
sapiens]
Length = 616
Score = 30.4 bits (67), Expect = 0.84
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 105 NKAVPELCLWMTEPRPVPQGSALRL----CPGTPGCAHVGASRSLPAMRMRCPG 154
N +P LW RPVP SAL L PG G + G S +CPG
Sbjct: 27 NFLLPVRRLWPCSRRPVPSSSALPLLHAFAPGPQGRSPAGISTEPVPPPPQCPG 80
>gi|20986488 YY1-associated protein isoform 2 [Homo sapiens]
Length = 796
Score = 30.4 bits (67), Expect = 0.84
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 51 LGDGSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPE 110
L G +++L + + R+ S KPL P + P P Q+ + P
Sbjct: 430 LPKGVVLKLKPVADRFPKKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPAQSTHSEAPP 489
Query: 111 LCLWMTEPRPVPQGSALRLCPGTP-----GCAHVGASRSLPAM 148
+ + P P+ + L+ PG P G + +LPAM
Sbjct: 490 SKMVLRIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAM 532
>gi|20986490 YY1-associated protein isoform 3 [Homo sapiens]
Length = 750
Score = 30.4 bits (67), Expect = 0.84
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 51 LGDGSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPE 110
L G +++L + + R+ S KPL P + P P Q+ + P
Sbjct: 384 LPKGVVLKLKPVADRFPKKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPAQSTHSEAPP 443
Query: 111 LCLWMTEPRPVPQGSALRLCPGTP-----GCAHVGASRSLPAM 148
+ + P P+ + L+ PG P G + +LPAM
Sbjct: 444 SKMVLRIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAM 486
>gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
sapiens]
Length = 274
Score = 30.0 bits (66), Expect = 1.1
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 20/74 (27%)
Query: 93 LQPQEVVPPQAANKAVP---------ELCLWM-----TEPRPVPQGSA-LRLCPGTPGCA 137
L+PQE PP AA +A P LCL + RP+PQ A +RLC T A
Sbjct: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPT---A 183
Query: 138 HVGASRSLPAMRMR 151
H G + +P R+R
Sbjct: 184 HKG--QRMPLYRIR 195
>gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo
sapiens]
Length = 274
Score = 30.0 bits (66), Expect = 1.1
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 20/74 (27%)
Query: 93 LQPQEVVPPQAANKAVP---------ELCLWM-----TEPRPVPQGSA-LRLCPGTPGCA 137
L+PQE PP AA +A P LCL + RP+PQ A +RLC T A
Sbjct: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPT---A 183
Query: 138 HVGASRSLPAMRMR 151
H G + +P R+R
Sbjct: 184 HKG--QRMPLYRIR 195
>gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
sapiens]
Length = 274
Score = 30.0 bits (66), Expect = 1.1
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 20/74 (27%)
Query: 93 LQPQEVVPPQAANKAVP---------ELCLWM-----TEPRPVPQGSA-LRLCPGTPGCA 137
L+PQE PP AA +A P LCL + RP+PQ A +RLC T A
Sbjct: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPT---A 183
Query: 138 HVGASRSLPAMRMR 151
H G + +P R+R
Sbjct: 184 HKG--QRMPLYRIR 195
>gi|40255251 hypothetical protein LOC131408 [Homo sapiens]
Length = 335
Score = 30.0 bits (66), Expect = 1.1
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 25/126 (19%)
Query: 17 TREFPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSL---VRLSECWPDWQRGGER- 72
+R QG E +S + V P C S+ SL DG L RL+ Q G+
Sbjct: 199 SRPVRQGSVEPESDCSQTVSPDTLC----SSLCSLEDGLLGSPARLAS-----QLLGDEL 249
Query: 73 ---KNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRL 129
K P S E SA+ + PL+ Q+ + N + E CL E P P L
Sbjct: 250 LLAKLPPSRE-----SAFRSLGPLEAQDSL----YNSPLTESCLSPAEEEPAPCKDCQPL 300
Query: 130 CPGTPG 135
CP G
Sbjct: 301 CPPLTG 306
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,969,522
Number of Sequences: 37866
Number of extensions: 514000
Number of successful extensions: 1840
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1772
Number of HSP's gapped (non-prelim): 143
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.