Guide to the Human Genome
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Name: LOC100288594 Sequence: fasta or formatted (177aa) NCBI GI: 239508708
Description:

PREDICTED: similar to hCG1998993

Not currently referenced in the text

Other entries for this name:
alt prot {177aa} PREDICTED: hypothetical protein XP_002342749
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         11           2
 C cysteine            4.5          8           1
 D aspartate           2.3          4           1
 E glutamate           7.9         14           2
 F phenylalanine       1.1          2           1
 G glycine            10.2         18           2
 H histidine           1.1          2           1
 I isoleucine          1.1          2           1
 K lysine              2.3          4           1
 L leucine            11.9         21           2
 M methionine          2.3          4           1
 N asparagine          1.7          3           1
 P proline            13.0         23           2
 Q glutamine           6.2         11           2
 R arginine            9.6         17           1
 S serine              7.9         14           1
 T threonine           2.3          4           1
 V valine              5.1          9           2
 W tryptophan          2.8          5           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1998993 
LOC100291271          1.000   PREDICTED: hypothetical protein XP_002346890 
LOC100288594          0.989   PREDICTED: hypothetical protein XP_002342749 
LOC100293682          0.977   PREDICTED: similar to FLJ00049 protein 
SF3B4                 0.031   splicing factor 3b, subunit 4 
TCEB3CL               0.025   transcription elongation factor B polypeptide 3C-li...
TCEB3C                0.025   transcription elongation factor B polypeptide 3C [H...
HIVEP3                0.023   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.023   human immunodeficiency virus type I enhancer bindin...
ARHGAP9               0.023   Rho GTPase activating protein 9 isoform 1 
ARHGAP9               0.023   Rho GTPase activating protein 9 isoform 2 
IRF5                  0.023   interferon regulatory factor 5 isoform d 
GLTSCR1               0.023   glioma tumor suppressor candidate region gene 1 [Ho...
ZNF219                0.020   zinc finger protein 219 
ZNF219                0.020   zinc finger protein 219 
ZNF219                0.020   zinc finger protein 219 
PNPLA1                0.020   patatin-like phospholipase domain containing 1 isof...
PNPLA1                0.020   patatin-like phospholipase domain containing 1 isof...
PNPLA1                0.020   patatin-like phospholipase domain containing 1 isof...
SRCAP                 0.020   Snf2-related CBP activator protein 
RIN3                  0.017   Ras and Rab interactor 3 
FAM188B               0.017   hypothetical protein LOC84182 
LOC100288738          0.014   PREDICTED: hypothetical protein XP_002343788 
LOC100291948          0.014   PREDICTED: hypothetical protein XP_002345897 
LOC100291512          0.014   PREDICTED: hypothetical protein XP_002346753 
LOC100288180          0.014   PREDICTED: hypothetical protein XP_002342610 
YY1AP1                0.014   YY1-associated protein isoform 2 
YY1AP1                0.014   YY1-associated protein isoform 3 
SEC16A                0.014   SEC16 homolog A 
LOC645722             0.014   PREDICTED: similar to hCG2037003 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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