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Search of human proteins with 239742921
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742921 PREDICTED: hypothetical protein XP_002342685 [Homo
sapiens]
(105 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742921 PREDICTED: hypothetical protein XP_002342685 [Homo ... 232 4e-62
gi|239754349 PREDICTED: hypothetical protein [Homo sapiens] 230 2e-61
gi|239748897 PREDICTED: hypothetical protein XP_002346887 [Homo ... 230 2e-61
gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3... 33 0.048
gi|4507831 Unc-51-like kinase 1 [Homo sapiens] 32 0.082
gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens] 32 0.082
gi|4502027 albumin preproprotein [Homo sapiens] 32 0.11
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 30 0.31
gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo s... 30 0.41
gi|209862782 hypothetical protein LOC730130 [Homo sapiens] 30 0.41
gi|13375756 occludin/ELL domain containing 1 [Homo sapiens] 30 0.41
gi|194248077 Kruppel-like factor 4 (gut) [Homo sapiens] 30 0.53
gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo ... 29 0.69
gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo ... 29 0.69
gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo ... 29 0.69
gi|65506328 protein phosphatase 1J (PP2C domain containing) [Hom... 29 0.69
gi|239756985 PREDICTED: hypothetical protein XP_002345137 [Homo ... 29 0.90
gi|169204828 PREDICTED: hypothetical protein [Homo sapiens] 29 0.90
gi|239751500 PREDICTED: hypothetical protein XP_002347885 [Homo ... 29 0.90
gi|169205567 PREDICTED: hypothetical protein [Homo sapiens] 29 0.90
gi|239746001 PREDICTED: hypothetical protein XP_002344190 [Homo ... 29 0.90
gi|169204182 PREDICTED: hypothetical protein [Homo sapiens] 29 0.90
gi|74027265 serine peptidase inhibitor, Kunitz type 1 isoform 2 ... 29 0.90
gi|4504329 serine peptidase inhibitor, Kunitz type 1 isoform 2 p... 29 0.90
gi|32313599 serine peptidase inhibitor, Kunitz type 1 isoform 1 ... 29 0.90
gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo sap... 29 0.90
gi|115387114 islet-1 [Homo sapiens] 29 0.90
gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens] 28 1.2
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ... 28 1.2
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ... 28 1.2
>gi|239742921 PREDICTED: hypothetical protein XP_002342685 [Homo
sapiens]
Length = 105
Score = 232 bits (592), Expect = 4e-62
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MTMSVKQKVKQRTGTAGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60
MTMSVKQKVKQRTGTAGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN
Sbjct: 1 MTMSVKQKVKQRTGTAGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60
Query: 61 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105
EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD
Sbjct: 61 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105
>gi|239754349 PREDICTED: hypothetical protein [Homo sapiens]
Length = 105
Score = 230 bits (586), Expect = 2e-61
Identities = 104/105 (99%), Positives = 104/105 (99%)
Query: 1 MTMSVKQKVKQRTGTAGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60
MTMSVKQKVKQRTGTAGAAAGCCLC CSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN
Sbjct: 1 MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60
Query: 61 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105
EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD
Sbjct: 61 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105
>gi|239748897 PREDICTED: hypothetical protein XP_002346887 [Homo
sapiens]
Length = 105
Score = 230 bits (586), Expect = 2e-61
Identities = 104/105 (99%), Positives = 104/105 (99%)
Query: 1 MTMSVKQKVKQRTGTAGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60
MTMSVKQKVKQRTGTAGAAAGCCLC CSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN
Sbjct: 1 MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60
Query: 61 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105
EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD
Sbjct: 61 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105
>gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3B1
[Homo sapiens]
Length = 390
Score = 33.1 bits (74), Expect = 0.048
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 14 GTAGAAAGCCLCLCSCSRAGHD---VARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARP 70
G+ AA G L L S SRA HD +A PPRLP A + P S +E + AA P
Sbjct: 53 GSCAAAPGLLL-LGSGSRAAHDPPALATAPDGTPPRLPFRAPPATPLASGKEMAEGAASP 111
>gi|4507831 Unc-51-like kinase 1 [Homo sapiens]
Length = 1050
Score = 32.3 bits (72), Expect = 0.082
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 36 VARPLRPAPPRLPLGALCSPPCCSNEEP 63
V RP P PP PLGA+ SPP S +P
Sbjct: 565 VVRPKLPKPPTDPLGAVFSPPQASPPQP 592
>gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens]
Length = 533
Score = 32.3 bits (72), Expect = 0.082
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 42 PAPPRLPLGALCSPPCCSNEEPRQPAARPHWLRQRSKFHE 81
P PP+ P+ AL PP N P P H RS+ H+
Sbjct: 187 PVPPQRPMAALPPPPAGRNHSPLPPPQTNHEEPSRSRNHK 226
>gi|4502027 albumin preproprotein [Homo sapiens]
Length = 609
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 49 LGALCSPPCCSNEEPRQPAARPHW---LRQRSKFHEGTPTSARGTRCCS 94
LG + S C E R P A + L Q HE TP S R T+CC+
Sbjct: 454 LGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCT 502
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 30.4 bits (67), Expect = 0.31
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 39 PLRPAPPRLPLGALCSPPCCSNEEPRQPAARP 70
P P P G PPCC +P+ PA+ P
Sbjct: 975 PTAPGAPSPAAGPTKLPPCCHPPDPKPPASSP 1006
>gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo
sapiens]
Length = 832
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 20 AGCCLCLCSCSR----AGH-DVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAA----RP 70
AGC L SC AG + P R P RL L L PP ++ PR A P
Sbjct: 14 AGCSLAGASCGPQRGPAGSVPASAPARTPPCRLLLVLLLLPPLAASSRPRAWGAAAPSAP 73
Query: 71 HW 72
HW
Sbjct: 74 HW 75
>gi|209862782 hypothetical protein LOC730130 [Homo sapiens]
Length = 380
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 30 SRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWLR 74
+R G RP P P A C P + E P + A P W+R
Sbjct: 12 ARRGGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWMR 56
>gi|13375756 occludin/ELL domain containing 1 [Homo sapiens]
Length = 264
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 31 RAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPH 71
RAGHD R RP+ R PL P + E P+ +R H
Sbjct: 32 RAGHDAPRRTRPS-ARKPLSCFSRRPMPTREPPKTRGSRGH 71
>gi|194248077 Kruppel-like factor 4 (gut) [Homo sapiens]
Length = 479
Score = 29.6 bits (65), Expect = 0.53
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 40 LRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWLRQRSKFH 80
++P P L L P C EEP+ R W R+R+ H
Sbjct: 356 MQPQVPPLHYQELMPPGSCMPEEPKPKRGRRSWPRKRTATH 396
>gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo
sapiens]
Length = 237
Score = 29.3 bits (64), Expect = 0.69
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 23 CLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHW 72
CL C C A P P+P +P + C P + EP RP W
Sbjct: 113 CLSACGCPSALVTPQAPAVPSPGYVPAPSFCHPHQWAASEP-----RPFW 157
>gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo
sapiens]
Length = 237
Score = 29.3 bits (64), Expect = 0.69
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 23 CLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHW 72
CL C C A P P+P +P + C P + EP RP W
Sbjct: 113 CLSACGCPSALVTPQAPAVPSPGYVPAPSFCHPHQWAASEP-----RPFW 157
>gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo
sapiens]
Length = 237
Score = 29.3 bits (64), Expect = 0.69
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 23 CLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHW 72
CL C C A P P+P +P + C P + EP RP W
Sbjct: 113 CLSACGCPSALVTPQAPAVPSPGYVPAPSFCHPHQWAASEP-----RPFW 157
>gi|65506328 protein phosphatase 1J (PP2C domain containing) [Homo
sapiens]
Length = 505
Score = 29.3 bits (64), Expect = 0.69
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 37 ARPLRPAPPRLPLGALCSPPCCSNEEPRQPAAR 69
A P RP P LP A +PP + E PR P A+
Sbjct: 18 APPPRPKSPDLP-NAASAPPAAAPEAPRSPPAK 49
>gi|239756985 PREDICTED: hypothetical protein XP_002345137 [Homo
sapiens]
Length = 253
Score = 28.9 bits (63), Expect = 0.90
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 12 RTGT--AGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEP 63
RTG A AAA C C S G P RP P G+ S +P
Sbjct: 64 RTGVLCAAAAANCSRACCCSSLGGSGTGAPARPCAPAASWGSASWSGLDSESDP 117
>gi|169204828 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 28.9 bits (63), Expect = 0.90
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 14 GTAGAAAGCCLCLCSC 29
G+AG GCC C C C
Sbjct: 147 GSAGPCPGCCCCCCCC 162
>gi|239751500 PREDICTED: hypothetical protein XP_002347885 [Homo
sapiens]
Length = 253
Score = 28.9 bits (63), Expect = 0.90
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 12 RTGT--AGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEP 63
RTG A AAA C C S G P RP P G+ S +P
Sbjct: 64 RTGVLCAAAAANCSRACCCSSLGGSGTGAPARPCAPAASWGSASWSGLDSESDP 117
>gi|169205567 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 28.9 bits (63), Expect = 0.90
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 14 GTAGAAAGCCLCLCSC 29
G+AG GCC C C C
Sbjct: 147 GSAGPCPGCCCCCCCC 162
>gi|239746001 PREDICTED: hypothetical protein XP_002344190 [Homo
sapiens]
Length = 253
Score = 28.9 bits (63), Expect = 0.90
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 12 RTGT--AGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEP 63
RTG A AAA C C S G P RP P G+ S +P
Sbjct: 64 RTGVLCAAAAANCSRACCCSSLGGSGTGAPARPCAPAASWGSASWSGLDSESDP 117
>gi|169204182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 28.9 bits (63), Expect = 0.90
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 14 GTAGAAAGCCLCLCSC 29
G+AG GCC C C C
Sbjct: 147 GSAGPCPGCCCCCCCC 162
>gi|74027265 serine peptidase inhibitor, Kunitz type 1 isoform 2
precursor [Homo sapiens]
Length = 513
Score = 28.9 bits (63), Expect = 0.90
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 10 KQRTGTAGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALC 53
+ R AG A LC+ G P PAPP LP GA C
Sbjct: 9 RARLAPAGIPAVALWLLCTLGLQGTQAGPP--PAPPGLPAGADC 50
>gi|4504329 serine peptidase inhibitor, Kunitz type 1 isoform 2
precursor [Homo sapiens]
Length = 513
Score = 28.9 bits (63), Expect = 0.90
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 10 KQRTGTAGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALC 53
+ R AG A LC+ G P PAPP LP GA C
Sbjct: 9 RARLAPAGIPAVALWLLCTLGLQGTQAGPP--PAPPGLPAGADC 50
>gi|32313599 serine peptidase inhibitor, Kunitz type 1 isoform 1
precursor [Homo sapiens]
Length = 529
Score = 28.9 bits (63), Expect = 0.90
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 10 KQRTGTAGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALC 53
+ R AG A LC+ G P PAPP LP GA C
Sbjct: 9 RARLAPAGIPAVALWLLCTLGLQGTQAGPP--PAPPGLPAGADC 50
>gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo
sapiens]
Length = 633
Score = 28.9 bits (63), Expect = 0.90
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 16 AGAAAGCCLCLCSCSRAGHDVARP---LRPAPPRLPLGALCSPPCCSNEEPRQPAARP 70
A AAA CS AG D A +P P P A +P E PR+P P
Sbjct: 2 AAAAAAATTAACSSGSAGTDAAGASGLQQPPPQPQPQPAAAAPAQPPPEPPRKPRMDP 59
>gi|115387114 islet-1 [Homo sapiens]
Length = 349
Score = 28.9 bits (63), Expect = 0.90
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 31 RAGHDVAR--------PLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWLRQRSK 78
RA HDV PL P P PL P RQPA RPH +Q K
Sbjct: 130 RADHDVVERASLGAGDPLSPLHPARPLQMAAEPISA-----RQPALRPHVHKQPEK 180
>gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens]
Length = 739
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 17/75 (22%)
Query: 26 LCSCSRAGHDVARPLRPAPPRLPLGA-----------------LCSPPCCSNEEPRQPAA 68
L + S++G LRPA P P+GA L +PP S +P+ P
Sbjct: 367 LSNISKSGRMGPAMLRPALPAGPVGASSWQAKRVDVSELAAEQLTAPPSASPTQPQTPEG 426
Query: 69 RPHWLRQRSKFHEGT 83
WL + E +
Sbjct: 427 GGQWLNSSCAWSESS 441
>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
sapiens]
Length = 427
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 8 KVKQRTGTAGAAAGCCLCLCSCSRAGHDVARPLRPAPPRL----PLGALCSPPC-CSNEE 62
+V R G A AAA CC C C AG +P RP RL P + PC C +
Sbjct: 67 RVVPRPGVARAAA-CCACAC----AGRTNRQP-RPFQARLLAAVPSASNSKTPCTCMSAS 120
Query: 63 PR 64
PR
Sbjct: 121 PR 122
>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
sapiens]
Length = 537
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 8 KVKQRTGTAGAAAGCCLCLCSCSRAGHDVARPLRPAPPRL----PLGALCSPPC-CSNEE 62
+V R G A AAA CC C C AG +P RP RL P + PC C +
Sbjct: 67 RVVPRPGVARAAA-CCACAC----AGRTNRQP-RPFQARLLAAVPSASNSKTPCTCMSAS 120
Query: 63 PR 64
PR
Sbjct: 121 PR 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,387,706
Number of Sequences: 37866
Number of extensions: 281241
Number of successful extensions: 1466
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 155
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.