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Search of human proteins with 239742749
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742749 PREDICTED: hypothetical protein XP_002342626 [Homo
sapiens]
(277 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742749 PREDICTED: hypothetical protein XP_002342626 [Homo ... 567 e-162
gi|214831495 hypothetical protein LOC285679 [Homo sapiens] 524 e-149
gi|169168458 PREDICTED: hypothetical protein [Homo sapiens] 459 e-129
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] 138 5e-33
gi|239743732 PREDICTED: family with sequence similarity 75, memb... 73 2e-13
gi|223633941 hypothetical protein LOC389730 [Homo sapiens] 62 5e-10
gi|91206406 hypothetical protein LOC642265 [Homo sapiens] 62 5e-10
gi|133892686 hypothetical protein LOC727830 [Homo sapiens] 61 1e-09
gi|146231958 hypothetical protein LOC647060 [Homo sapiens] 61 1e-09
gi|165377334 hypothetical protein LOC727905 [Homo sapiens] 61 1e-09
gi|153791826 hypothetical protein LOC26165 [Homo sapiens] 60 2e-09
gi|223468617 family with sequence similarity 75, member C1 [Homo... 55 7e-08
gi|169174618 PREDICTED: family with sequence similarity 75, memb... 48 8e-06
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 45 9e-05
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 44 2e-04
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 43 3e-04
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 43 3e-04
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 43 3e-04
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 42 5e-04
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 42 5e-04
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 42 5e-04
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 42 6e-04
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 42 6e-04
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 41 0.001
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 41 0.001
gi|58530876 melanoma antigen family C, 1 [Homo sapiens] 41 0.001
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 41 0.001
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 41 0.001
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 40 0.002
gi|194097341 period 1 [Homo sapiens] 40 0.003
>gi|239742749 PREDICTED: hypothetical protein XP_002342626 [Homo
sapiens]
Length = 277
Score = 567 bits (1462), Expect = e-162
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MPRAQLPEDSSAVDMDILFPLHSVIETELCPSPIPQIIHFVLFIVFSLVILIILCPYIPR 60
MPRAQLPEDSSAVDMDILFPLHSVIETELCPSPIPQIIHFVLFIVFSLVILIILCPYIPR
Sbjct: 1 MPRAQLPEDSSAVDMDILFPLHSVIETELCPSPIPQIIHFVLFIVFSLVILIILCPYIPR 60
Query: 61 EPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDCRILLKELENLEVYTFLLEKRLKKLS 120
EPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDCRILLKELENLEVYTFLLEKRLKKLS
Sbjct: 61 EPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDCRILLKELENLEVYTFLLEKRLKKLS 120
Query: 121 REGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPK 180
REGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPK
Sbjct: 121 REGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPK 180
Query: 181 TSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHAGRRRQGS 240
TSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHAGRRRQGS
Sbjct: 181 TSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHAGRRRQGS 240
Query: 241 RFPQPGCANAAGRTRHQNPRHSHGHRISDIHEQLGIS 277
RFPQPGCANAAGRTRHQNPRHSHGHRISDIHEQLGIS
Sbjct: 241 RFPQPGCANAAGRTRHQNPRHSHGHRISDIHEQLGIS 277
>gi|214831495 hypothetical protein LOC285679 [Homo sapiens]
Length = 277
Score = 524 bits (1350), Expect = e-149
Identities = 259/277 (93%), Positives = 265/277 (95%)
Query: 1 MPRAQLPEDSSAVDMDILFPLHSVIETELCPSPIPQIIHFVLFIVFSLVILIILCPYIPR 60
MPRAQLPEDSSAVDMDILFPL SVI TELCPSPIPQIIHFVLF+VFSLVILIIL YIPR
Sbjct: 1 MPRAQLPEDSSAVDMDILFPLDSVIGTELCPSPIPQIIHFVLFVVFSLVILIILRLYIPR 60
Query: 61 EPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDCRILLKELENLEVYTFLLEKRLKKLS 120
EPSSVPPREEDSENDQAEVGEWLRIGNKYITLKD RILLKELENLE+YTFL +K LKKLS
Sbjct: 61 EPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDYRILLKELENLEIYTFLSKKCLKKLS 120
Query: 121 REGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPK 180
REGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAP APLASMPSSVPK
Sbjct: 121 REGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPLAPLASMPSSVPK 180
Query: 181 TSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHAGRRRQGS 240
TS+ESLGSPSSLSSS+ EPLCPLKHPSH+PPASTLSPNPTSSTESLGETPHAGR RQGS
Sbjct: 181 TSVESLGSPSSLSSSKPREPLCPLKHPSHQPPASTLSPNPTSSTESLGETPHAGRWRQGS 240
Query: 241 RFPQPGCANAAGRTRHQNPRHSHGHRISDIHEQLGIS 277
RFPQPGCANAAGR RHQNPRHSHGHRISDIHEQLGIS
Sbjct: 241 RFPQPGCANAAGRIRHQNPRHSHGHRISDIHEQLGIS 277
>gi|169168458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 353
Score = 459 bits (1180), Expect = e-129
Identities = 226/228 (99%), Positives = 227/228 (99%)
Query: 1 MPRAQLPEDSSAVDMDILFPLHSVIETELCPSPIPQIIHFVLFIVFSLVILIILCPYIPR 60
MPRAQLPEDSSAVDMDILFPLHSVIETELCPS IPQIIHFVLF+VFSLVILIILCPYIPR
Sbjct: 1 MPRAQLPEDSSAVDMDILFPLHSVIETELCPSSIPQIIHFVLFVVFSLVILIILCPYIPR 60
Query: 61 EPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDCRILLKELENLEVYTFLLEKRLKKLS 120
EPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDCRILLKELENLEVYTFLLEKRLKKLS
Sbjct: 61 EPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDCRILLKELENLEVYTFLLEKRLKKLS 120
Query: 121 REGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPK 180
REGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPK
Sbjct: 121 REGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPK 180
Query: 181 TSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLG 228
TSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLG
Sbjct: 181 TSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLG 228
>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
Length = 1445
Score = 138 bits (348), Expect = 5e-33
Identities = 97/250 (38%), Positives = 129/250 (51%), Gaps = 8/250 (3%)
Query: 2 PRAQLPEDSSAVDMD-ILFPLHSVIETELCPSPIPQIIHFVLFIVFSLVILIILCPYIPR 60
P + D A+ M+ +LFPL S T L PS P ++ F+L V LV+L +L Y+
Sbjct: 29 PSVECTGDDIALQMEKMLFPLKSPSATWLSPSSTPWMMDFILTSVCGLVLLFLLLLYVHS 88
Query: 61 EPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDCRILLKELENLEVYTFLLEKRLKKLS 120
+P S PP + S + K LK CRILL+ELE +LLE L+KL+
Sbjct: 89 DPPSPPPGRKRSSREPQRERSGRSRSRKISALKACRILLRELEETRDLNYLLESHLRKLA 148
Query: 121 REGSSHHLPRQVRP-GPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVP 179
EGSS HLP P G V KP PA+ H+P G+ P+ +SP APPAPLAS S P
Sbjct: 149 GEGSS-HLPLGGDPLGDVCKPVPAKAHQPH-GKCMQDPSPASLSPPAPPAPLASTLSPGP 206
Query: 180 KTSIESLGSPSSLSSSQASEPLCPLKHPSHRP----PASTLSPNPTSSTESLGETPHAGR 235
T E G S+LS+S EPL PLK P+ +P P S P +S+ ++ AG
Sbjct: 207 MTFSEPFGPHSTLSASGPPEPLLPLKCPATQPHVVFPPSPQPHGPLASSPPPPDSSLAGL 266
Query: 236 RRQGSRFPQP 245
+ + P P
Sbjct: 267 QCGSTTCPVP 276
>gi|239743732 PREDICTED: family with sequence similarity 75, member
A4 isoform 1 [Homo sapiens]
Length = 1361
Score = 73.2 bits (178), Expect = 2e-13
Identities = 75/236 (31%), Positives = 103/236 (43%), Gaps = 17/236 (7%)
Query: 1 MPRAQLPEDSSAVDMDIL-FPLHSVIETEL-CPSPIPQIIHFVLFIVFSLVILIILCPYI 58
MPRAQL E ++ + M+ L FPL + + L PS P ++ L +VF+L +L PY+
Sbjct: 1 MPRAQLLESNAPIHMENLPFPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFVLLPYL 60
Query: 59 PREPSSVPPREEDSENDQAEVGEWLRIGN--KYITLKDCRILLKELENLEVYTFLLEKRL 116
PP + + VG R K +L+ R + LE L+ L
Sbjct: 61 SYFRCDDPPSPSPGKR-KCPVGRRRRPRGRMKNHSLRAGRECRRGLEETSDLLSQLQSLL 119
Query: 117 KKLSREGSSHHLPRQVRPGPVYKPAP----ARNHRPRGGRGKASPTSFHVSPRAP-PAPL 171
+G L PG V + AP +H P P+A P L
Sbjct: 120 GPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDL 179
Query: 172 ASMPSSVPKTSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESL 227
AS PS P T+ S SSLS+SQ EP PL+HPS PPA L P+P + + L
Sbjct: 180 ASTPSPGPMTT-----SVSSLSASQPPEPSLPLEHPSPEPPA--LFPHPPHTPDPL 228
>gi|223633941 hypothetical protein LOC389730 [Homo sapiens]
Length = 1343
Score = 62.0 bits (149), Expect = 5e-10
Identities = 67/221 (30%), Positives = 92/221 (41%), Gaps = 16/221 (7%)
Query: 19 FPLHSVIETEL-CPSPIPQIIHFVLFIVFSLVILIILCPYIPREPSSVPPREEDSENDQA 77
FPL + + L PS P ++ L +VF+L +L PY+ PP + +
Sbjct: 6 FPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFHCDDPPSPSPGKR-KC 64
Query: 78 EVGEWLRIGN--KYITLKDCRILLKELENLEVYTFLLEKRLKKLSREGSSHHLPRQVRPG 135
VG R K +L+ R + LE L+ L +G L PG
Sbjct: 65 PVGRRRRPRGRMKNHSLRAGRECPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPG 124
Query: 136 PVYKPAP----ARNHRPRGGRGKASPTSFHVSPRAP-PAPLASMPSSVPKTSIESLGSPS 190
V + AP +H P P+A P LAS PS P T+ S S
Sbjct: 125 EVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTT-----SVS 179
Query: 191 SLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETP 231
SLS+SQ EP PL+HPS PPA L P+P + + L +P
Sbjct: 180 SLSASQPPEPSLPLEHPSPEPPA--LFPHPPHTPDPLACSP 218
>gi|91206406 hypothetical protein LOC642265 [Homo sapiens]
Length = 1347
Score = 62.0 bits (149), Expect = 5e-10
Identities = 68/224 (30%), Positives = 96/224 (42%), Gaps = 22/224 (9%)
Query: 19 FPLHSVIETEL-CPSPIPQIIHFVLFIVFSLVILIILCPYIPREPSSVPPREEDSENDQA 77
FPL + + L PS P ++ L +VF+L +L PY+ PP + +
Sbjct: 6 FPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFRCDDPPSPSPGKR-KC 64
Query: 78 EVGEWLR----IGNKYITL-KDCRILLKELENLEVYTFLLEKRLKKLSREGSSHHLPRQV 132
VG R + N + ++CR L+E +L L+ L +G L
Sbjct: 65 PVGRRRRPRGRMKNHSLRAGRECRRGLQETSDL---LSQLQSLLGPHLDKGDFGQLSGPD 121
Query: 133 RPGPVYKPAP----ARNHRPRGGRGKASPTSFHVSPRAP-PAPLASMPSSVPKTSIESLG 187
PG V + AP +H P P+A P LAS PS P T+
Sbjct: 122 PPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTT----- 176
Query: 188 SPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETP 231
S SSLS+SQ EP PL+HPS PPA L P+P + + L +P
Sbjct: 177 SVSSLSASQPPEPSLPLEHPSPEPPA--LFPHPPHTPDPLACSP 218
>gi|133892686 hypothetical protein LOC727830 [Homo sapiens]
Length = 1347
Score = 60.8 bits (146), Expect = 1e-09
Identities = 66/217 (30%), Positives = 90/217 (41%), Gaps = 16/217 (7%)
Query: 19 FPLHSVIETEL-CPSPIPQIIHFVLFIVFSLVILIILCPYIPREPSSVPPREEDSENDQA 77
FPL + + L PS P ++ L +VF+L +L PY+ PP + +
Sbjct: 6 FPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFRCDDPPSPSPGKR-KC 64
Query: 78 EVGEWLRIGN--KYITLKDCRILLKELENLEVYTFLLEKRLKKLSREGSSHHLPRQVRPG 135
VG R K +L+ R + LE L+ L +G L PG
Sbjct: 65 PVGRRRRPRGRMKNHSLRAGRECRRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPG 124
Query: 136 PVYKPAP----ARNHRPRGGRGKASPTSFHVSPRAP-PAPLASMPSSVPKTSIESLGSPS 190
V + AP +H P P+A P LAS PS P T+ S S
Sbjct: 125 EVGERAPDGASQSSHEPMEDAAPILSLLASPDPQAKHPQDLASTPSPGPMTT-----SVS 179
Query: 191 SLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESL 227
SLS+SQ EP PL+HPS PPA L P+P + + L
Sbjct: 180 SLSASQPPEPSLPLEHPSPEPPA--LFPHPPHTPDPL 214
>gi|146231958 hypothetical protein LOC647060 [Homo sapiens]
Length = 1347
Score = 60.8 bits (146), Expect = 1e-09
Identities = 66/221 (29%), Positives = 92/221 (41%), Gaps = 16/221 (7%)
Query: 19 FPLHSVIETEL-CPSPIPQIIHFVLFIVFSLVILIILCPYIPREPSSVPPREEDSENDQA 77
FPL + + L PS P ++ L +VF+L +L PY+ PP + +
Sbjct: 6 FPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFRCDDPPSPSPGKR-KC 64
Query: 78 EVGEWLRIGN--KYITLKDCRILLKELENLEVYTFLLEKRLKKLSREGSSHHLPRQVRPG 135
VG R K +L+ R + L+ L+ L +G L PG
Sbjct: 65 PVGRRRRPRGRMKNHSLRAGRECPRGLQETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPG 124
Query: 136 PVYKPAP----ARNHRPRGGRGKASPTSFHVSPRAP-PAPLASMPSSVPKTSIESLGSPS 190
V + AP +H P P+A P LAS PS P T+ S S
Sbjct: 125 EVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTT-----SVS 179
Query: 191 SLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETP 231
SLS+SQ EP PL+HPS PPA L P+P + + L +P
Sbjct: 180 SLSASQPPEPSLPLEHPSPEPPA--LFPHPPHTPDPLACSP 218
>gi|165377334 hypothetical protein LOC727905 [Homo sapiens]
Length = 1347
Score = 60.8 bits (146), Expect = 1e-09
Identities = 66/217 (30%), Positives = 90/217 (41%), Gaps = 16/217 (7%)
Query: 19 FPLHSVIETEL-CPSPIPQIIHFVLFIVFSLVILIILCPYIPREPSSVPPREEDSENDQA 77
FPL + + L PS P ++ L +VF+L +L PY+ PP + +
Sbjct: 6 FPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFRCDDPPSPSPGKR-KC 64
Query: 78 EVGEWLRIGN--KYITLKDCRILLKELENLEVYTFLLEKRLKKLSREGSSHHLPRQVRPG 135
VG R K +L+ R + LE L+ L +G L PG
Sbjct: 65 PVGRRRRPRGRMKNHSLRAGRECRRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPG 124
Query: 136 PVYKPAP----ARNHRPRGGRGKASPTSFHVSPRAP-PAPLASMPSSVPKTSIESLGSPS 190
V + AP +H P P+A P LAS PS P T+ S S
Sbjct: 125 EVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTT-----SVS 179
Query: 191 SLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESL 227
SLS+SQ EP PL+HPS PPA L P+P + + L
Sbjct: 180 SLSASQPPEPSLPLEHPSPEPPA--LFPHPPHTPDPL 214
>gi|153791826 hypothetical protein LOC26165 [Homo sapiens]
Length = 1347
Score = 60.5 bits (145), Expect = 2e-09
Identities = 66/217 (30%), Positives = 90/217 (41%), Gaps = 16/217 (7%)
Query: 19 FPLHSVIETEL-CPSPIPQIIHFVLFIVFSLVILIILCPYIPREPSSVPPREEDSENDQA 77
FPL + + L PS P ++ L +VF+L +L PY+ PP + +
Sbjct: 6 FPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFRCDDPPSPSPGKR-KC 64
Query: 78 EVGEWLRIGN--KYITLKDCRILLKELENLEVYTFLLEKRLKKLSREGSSHHLPRQVRPG 135
VG R K +L+ R + LE L+ L +G L PG
Sbjct: 65 PVGRRRRPRGRMKNHSLRAGRECPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPG 124
Query: 136 PVYKPAP----ARNHRPRGGRGKASPTSFHVSPRAP-PAPLASMPSSVPKTSIESLGSPS 190
V + AP +H P P+A P LAS PS P T+ S S
Sbjct: 125 EVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTT-----SVS 179
Query: 191 SLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESL 227
SLS+SQ EP PL+HPS PPA L P+P + + L
Sbjct: 180 SLSASQPPEPSLPLEHPSPEPPA--LFPHPPHTPDPL 214
>gi|223468617 family with sequence similarity 75, member C1 [Homo
sapiens]
Length = 1188
Score = 55.1 bits (131), Expect = 7e-08
Identities = 67/234 (28%), Positives = 92/234 (39%), Gaps = 30/234 (12%)
Query: 19 FPLHSVIETEL-CPSPIPQIIHFVLFIVFSLVILIILCPYIP-----REPSSVPPREEDS 72
FPL + + L PS P ++ L +VF+L + +L PY PS P + +
Sbjct: 6 FPLKLLSASSLNTPSSTPWVLDIFLTLVFALGLFFLLLPYFSYLRCDNPPSPSPRKRKRH 65
Query: 73 ENDQAEVGEWLRIGN--------KYITLKDCRILLKELENLEVYTFLLEKRLKKLSREGS 124
Q + G K +L+ CR + LE L+ L +G
Sbjct: 66 LVSQRHLVSQCPTGRRGRPRGRMKNHSLRACRECPRGLEETWDLLSQLQSLLGPHLEKGD 125
Query: 125 SHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAP-------LASMPSS 177
L PG V K P + R + VSP A P P LAS P
Sbjct: 126 FGQLSGPDPPGEVGKRTP--DGASRSSHEPMEDAAPIVSPLASPDPRTKHPQDLASTPPP 183
Query: 178 VPKTSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETP 231
P T+ S SSLS+SQ EP L+ PS PPA L P+P + + L +P
Sbjct: 184 GPMTT-----SVSSLSASQPPEPSLLLERPSPEPPA--LFPHPPHTPDPLACSP 230
>gi|169174618 PREDICTED: family with sequence similarity 75, member
A4 isoform 2 [Homo sapiens]
Length = 1272
Score = 48.1 bits (113), Expect = 8e-06
Identities = 47/140 (33%), Positives = 62/140 (44%), Gaps = 15/140 (10%)
Query: 93 KDCRILLKELENLEVYTFLLEKRLKKLSREGSSHHLPRQVRPGPVYKPAP----ARNHRP 148
++CR L+E +L L+ L +G L PG V + AP +H P
Sbjct: 10 RECRRGLEETSDL---LSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEP 66
Query: 149 RGGRGKASPTSFHVSPRAP-PAPLASMPSSVPKTSIESLGSPSSLSSSQASEPLCPLKHP 207
P+A P LAS PS P T+ S SSLS+SQ EP PL+HP
Sbjct: 67 MEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTT-----SVSSLSASQPPEPSLPLEHP 121
Query: 208 SHRPPASTLSPNPTSSTESL 227
S PPA L P+P + + L
Sbjct: 122 SPEPPA--LFPHPPHTPDPL 139
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 44.7 bits (104), Expect = 9e-05
Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 19/135 (14%)
Query: 134 PGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPKTSIESLGSPSSLS 193
PGP +P R H G R K P PRA PA + P + + G P S
Sbjct: 439 PGPGPEPGSERGHGGHGKRAKERP------PRARPASTSPSPGAHGRR-----GGPEGKS 487
Query: 194 SSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHAGRRRQGSRFPQPGCANAAGR 253
SS++ P HP R +S+ SP+ S + S + PH+ R + P + GR
Sbjct: 488 SSRSPGP-----HP--RSWSSSRSPS-KSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGR 539
Query: 254 TRHQNPRHSHGHRIS 268
RH + R S
Sbjct: 540 ARHSEAEATRARRRS 554
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 43.9 bits (102), Expect = 2e-04
Identities = 37/108 (34%), Positives = 47/108 (43%), Gaps = 17/108 (15%)
Query: 129 PRQVRPGPVYK-----PAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSV----- 178
P P P ++ P RP+G K +P +P APP P + PS +
Sbjct: 1518 PPAAAPTPTHRRTSAIPRAFTRERPQGR--KEAPAPSKAAPAAPP-PARTQPSLIADETP 1574
Query: 179 PKTSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTES 226
P S+ S S SSLS + SEP P HP R PA T P P +S
Sbjct: 1575 PCYSLSS--SASSLSEPEPSEP--PAVHPRGREPAVTKDPGPGGGRDS 1618
Score = 33.1 bits (74), Expect = 0.27
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 137 VYKPAPARNHRPRGGRG-KASPTSFHVSPRAPPAPLASMPSSVPKTSIESLGSPSSLSSS 195
+Y P+PA +P+G G +A+P A PA A +PS + S SL P+ S
Sbjct: 1794 IYVPSPAPRAQPKGTPGPRATPRKVAPPCLAQPAAPAKVPSPGQQRS-RSLHRPAKTSE- 1851
Query: 196 QASEPLCPLKHP--SHRPPAS-TLSPNPTSSTESLGETPHAGRR----RQGSRFPQPGCA 248
L L P S PPA +P+ +SS S P +R + P PG +
Sbjct: 1852 -----LATLSQPPRSATPPARLAKTPSSSSSQTSPASQPLPRKRPPVTQAAGALPGPGAS 1906
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 42.7 bits (99), Expect = 3e-04
Identities = 58/207 (28%), Positives = 77/207 (37%), Gaps = 25/207 (12%)
Query: 56 PYIPREPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDCRILLKELENLEVYTFLLEKR 115
P +P P PR + A + +G K CR L + L L R
Sbjct: 105 PPLPH-PGDHHPRHRKNRGPSAGTSQ---LGKK----TQCRSLFLRTKGLCALLLELPPR 156
Query: 116 LKKLSREGSSHHLPRQVRPGPVY---KPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLA 172
+EG + + RP PVY KP P R GGR K+ P + P P
Sbjct: 157 PPPNLQEGGQRAIFQ--RP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGP 213
Query: 173 SMPSSVPKTSIESLGSPSSLSSSQASEPLCPLKHPSHRP-PASTLSPNPTSSTESLGETP 231
+ P + P + ES P + S+ S P P+H P P SP P + G P
Sbjct: 214 TAPPARP-PAYESREGPRGRAESRGSGP----AQPAHLPLPGPAHSPAPPAPELREGRAP 268
Query: 232 --HAGRR---RQGSRFPQPGCANAAGR 253
AGRR R+ + GCA R
Sbjct: 269 GSTAGRRPRPREPQAAEESGCATVGLR 295
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 42.7 bits (99), Expect = 3e-04
Identities = 58/207 (28%), Positives = 77/207 (37%), Gaps = 25/207 (12%)
Query: 56 PYIPREPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDCRILLKELENLEVYTFLLEKR 115
P +P P PR + A + +G K CR L + L L R
Sbjct: 105 PPLPH-PGDHHPRHRKNRGPSAGTSQ---LGKK----TQCRSLFLRTKGLCALLLELPPR 156
Query: 116 LKKLSREGSSHHLPRQVRPGPVY---KPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLA 172
+EG + + RP PVY KP P R GGR K+ P + P P
Sbjct: 157 PPPNLQEGGQRAIFQ--RP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGP 213
Query: 173 SMPSSVPKTSIESLGSPSSLSSSQASEPLCPLKHPSHRP-PASTLSPNPTSSTESLGETP 231
+ P + P + ES P + S+ S P P+H P P SP P + G P
Sbjct: 214 TAPPARP-PAYESREGPRGRAESRGSGP----AQPAHLPLPGPAHSPAPPAPELREGRAP 268
Query: 232 --HAGRR---RQGSRFPQPGCANAAGR 253
AGRR R+ + GCA R
Sbjct: 269 GSTAGRRPRPREPQAAEESGCATVGLR 295
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 42.7 bits (99), Expect = 3e-04
Identities = 58/207 (28%), Positives = 77/207 (37%), Gaps = 25/207 (12%)
Query: 56 PYIPREPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDCRILLKELENLEVYTFLLEKR 115
P +P P PR + A + +G K CR L + L L R
Sbjct: 105 PPLPH-PGDHHPRHRKNRGPSAGTSQ---LGKK----TQCRSLFLRTKGLCALLLELPPR 156
Query: 116 LKKLSREGSSHHLPRQVRPGPVY---KPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLA 172
+EG + + RP PVY KP P R GGR K+ P + P P
Sbjct: 157 PPPNLQEGGQRAIFQ--RP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGP 213
Query: 173 SMPSSVPKTSIESLGSPSSLSSSQASEPLCPLKHPSHRP-PASTLSPNPTSSTESLGETP 231
+ P + P + ES P + S+ S P P+H P P SP P + G P
Sbjct: 214 TAPPARP-PAYESREGPRGRAESRGSGP----AQPAHLPLPGPAHSPAPPAPELREGRAP 268
Query: 232 --HAGRR---RQGSRFPQPGCANAAGR 253
AGRR R+ + GCA R
Sbjct: 269 GSTAGRRPRPREPQAAEESGCATVGLR 295
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 42.4 bits (98), Expect = 5e-04
Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 19/145 (13%)
Query: 116 LKKLSREGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMP 175
+K+ S SH +V + + AR PR P PAPLA P
Sbjct: 60 VKRRSGGFKSHSATERVERSRLARACYARRLPPR--------------PTRSPAPLARRP 105
Query: 176 SSVPKTSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHAGR 235
P+ + G P S+ A+ P P + P+ R P S LS P S E P
Sbjct: 106 GKPPRRPKGAAGHP---SAPPAAAPAAPAQPPAPR-PESQLSDRP-QSWEQKPRGPGRSA 160
Query: 236 RRQGSRFPQPGCANAAGRTRHQNPR 260
R G+ P G A + R + PR
Sbjct: 161 RSAGAAAPPAGGLAQARQARRRRPR 185
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 42.4 bits (98), Expect = 5e-04
Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 19/145 (13%)
Query: 116 LKKLSREGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMP 175
+K+ S SH +V + + AR PR P PAPLA P
Sbjct: 60 VKRRSGGFKSHSATERVERSRLARACYARRLPPR--------------PTRSPAPLARRP 105
Query: 176 SSVPKTSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHAGR 235
P+ + G P S+ A+ P P + P+ R P S LS P S E P
Sbjct: 106 GKPPRRPKGAAGHP---SAPPAAAPAAPAQPPAPR-PESQLSDRP-QSWEQKPRGPGRSA 160
Query: 236 RRQGSRFPQPGCANAAGRTRHQNPR 260
R G+ P G A + R + PR
Sbjct: 161 RSAGAAAPPAGGLAQARQARRRRPR 185
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 42.4 bits (98), Expect = 5e-04
Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 19/145 (13%)
Query: 116 LKKLSREGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMP 175
+K+ S SH +V + + AR PR P PAPLA P
Sbjct: 60 VKRRSGGFKSHSATERVERSRLARACYARRLPPR--------------PTRSPAPLARRP 105
Query: 176 SSVPKTSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHAGR 235
P+ + G P S+ A+ P P + P+ R P S LS P S E P
Sbjct: 106 GKPPRRPKGAAGHP---SAPPAAAPAAPAQPPAPR-PESQLSDRP-QSWEQRPRGPGRSA 160
Query: 236 RRQGSRFPQPGCANAAGRTRHQNPR 260
R G+ P G A + R + PR
Sbjct: 161 RSAGAAAPPAGGLAQARQARRRRPR 185
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 42.0 bits (97), Expect = 6e-04
Identities = 38/146 (26%), Positives = 55/146 (37%), Gaps = 13/146 (8%)
Query: 130 RQVRPGPVYKPAPA-----------RNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSV 178
RQ P P PAPA R R R G K + +S + APPAP + S
Sbjct: 495 RQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKK 554
Query: 179 PKTSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHAGRRRQ 238
++ GS +S S+ + S + S R + + S S RRR
Sbjct: 555 HRSRDRKPGSHASSSARRRSRSRS--RSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRS 612
Query: 239 GSRFPQPGCANAAGRTRHQNPRHSHG 264
S P ++++ R RH+ G
Sbjct: 613 ASPPPATSSSSSSRRERHRGKHRDGG 638
Score = 30.0 bits (66), Expect = 2.3
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 135 GPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPKTSIESLGSPSSLSS 194
GP PAP+ SP+S SP PP P A P+ I P+ +
Sbjct: 183 GPAPPPAPSS----ASSSPSPSPSSSSPSPPPPPPPPAPPAPPAPRFDIYDPFHPTDEAY 238
Query: 195 SQASEP---LCPLKHPSHRPPASTLSPNPTSSTE 225
S P P + P +S +P+P E
Sbjct: 239 SPPPAPEQKYDPFEPTGSNPSSSAGTPSPEEEEE 272
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 42.0 bits (97), Expect = 6e-04
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 15/123 (12%)
Query: 113 EKRLKKLSREGSSHHLPRQV---RPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPA 169
E+ + LS EG +P V P P PAPA G G +P S +A PA
Sbjct: 703 ERSQQPLSAEGPHLSVPASVIVSAPPPAQDPAPATPVAKGAGLGPQAPDS-----QASPA 757
Query: 170 PLASMPSSVPKTSIESLGSPSSLSSSQASE-PLCPLKHPSHRPPASTLSPNPTSSTESLG 228
P +P++ P SPS + + P P HP+ RPP+ P S +S+
Sbjct: 758 PAPQIPAAAPLKGPGPSSSPSLPHQAPLGDSPHLPSPHPT-RPPS-----RPPSRPQSVS 811
Query: 229 ETP 231
P
Sbjct: 812 RPP 814
Score = 35.0 bits (79), Expect = 0.072
Identities = 30/141 (21%), Positives = 48/141 (34%), Gaps = 5/141 (3%)
Query: 124 SSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPKTSI 183
S H + P+ PA P + PT +P P A ++P +++
Sbjct: 534 SGAHSAHILSAAPIQVGQPALFQMPVSLAAGSLPTQSQPAPAGPAATTVLQGVTLPPSAV 593
Query: 184 ESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHAGRRRQGSRFP 243
L +P L +P P P T+ P P + P ++ Q + P
Sbjct: 594 AMLNTPDGLV-----QPATPAAATGEAAPVLTVQPAPQAPPAVSTPLPLGLQQPQAQQPP 648
Query: 244 QPGCANAAGRTRHQNPRHSHG 264
Q AA + P+ S G
Sbjct: 649 QAPTPQAAAPPQATTPQPSPG 669
Score = 30.0 bits (66), Expect = 2.3
Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 14/114 (12%)
Query: 123 GSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSP--RAPPA--------PLA 172
G S HLP P P P+ + RP+ S H P +APP
Sbjct: 786 GDSPHLPS---PHPTRPPSRPPS-RPQSVSRPPSEPPLHPCPPPQAPPTLPGIFVIQNQL 841
Query: 173 SMPSSVPKTSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTES 226
+P + + G P Q+ P PL H PP+ST S +SS S
Sbjct: 842 GVPPPASNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAVASSSETS 895
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 40.8 bits (94), Expect = 0.001
Identities = 29/104 (27%), Positives = 40/104 (38%)
Query: 124 SSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPKTSI 183
SS P ++P A + RPR G S SPR P PL P +
Sbjct: 119 SSPRTPLYLQPDAYGSLDRATSPRPRAFDGAGSSLGRAPSPRPGPGPLRQQGPPTPFDFL 178
Query: 184 ESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESL 227
GSP ++ + P + PS RPPA+ ++ SL
Sbjct: 179 GRAGSPRGSPLAEGPQAFFPERGPSPRPPATAYDAPASAFGSSL 222
Score = 31.2 bits (69), Expect = 1.0
Identities = 31/125 (24%), Positives = 43/125 (34%), Gaps = 8/125 (6%)
Query: 131 QVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPA---PLASMPSSVPKTSIESLG 187
Q +P P +P P +P+ +P H PP P P+ IE L
Sbjct: 411 QPQPQPQSQPQPQLPPQPQTQPQTPTPAPQHPQQTWPPVNEGPPKPPTELEPEPEIEGLL 470
Query: 188 SP----SSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHAGRRRQGSRFP 243
+P + + PL P + PP + P L E P +RR GS
Sbjct: 471 TPVLEAGDVDEGPVARPLSPTRLQPALPPEAQSVPELEEVARVLAEIPRPLKRR-GSMEQ 529
Query: 244 QPGCA 248
P A
Sbjct: 530 APAVA 534
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 40.8 bits (94), Expect = 0.001
Identities = 29/104 (27%), Positives = 40/104 (38%)
Query: 124 SSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPKTSI 183
SS P ++P A + RPR G S SPR P PL P +
Sbjct: 119 SSPRTPLYLQPDAYGSLDRATSPRPRAFDGAGSSLGRAPSPRPGPGPLRQQGPPTPFDFL 178
Query: 184 ESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESL 227
GSP ++ + P + PS RPPA+ ++ SL
Sbjct: 179 GRAGSPRGSPLAEGPQAFFPERGPSPRPPATAYDAPASAFGSSL 222
Score = 31.2 bits (69), Expect = 1.0
Identities = 31/125 (24%), Positives = 43/125 (34%), Gaps = 8/125 (6%)
Query: 131 QVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPA---PLASMPSSVPKTSIESLG 187
Q +P P +P P +P+ +P H PP P P+ IE L
Sbjct: 411 QPQPQPQSQPQPQLPPQPQTQPQTPTPAPQHPQQTWPPVNEGPPKPPTELEPEPEIEGLL 470
Query: 188 SP----SSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHAGRRRQGSRFP 243
+P + + PL P + PP + P L E P +RR GS
Sbjct: 471 TPVLEAGDVDEGPVARPLSPTRLQPALPPEAQSVPELEEVARVLAEIPRPLKRR-GSMEQ 529
Query: 244 QPGCA 248
P A
Sbjct: 530 APAVA 534
>gi|58530876 melanoma antigen family C, 1 [Homo sapiens]
Length = 1142
Score = 40.8 bits (94), Expect = 0.001
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 157 PTSFHVSPRAPPAPLASMPSSVPKTSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTL 216
P SF SP++PP A P P +S S S L SS S P P + P+ P S +
Sbjct: 756 PQSFPESPQSPPEGPAQSPLQRPVSSFFSYTLASLLQSSHES-PQSPPEGPAQSPLQSPV 814
Query: 217 SPNPTSSTESLGET 230
S P+S++ SL ++
Sbjct: 815 SSFPSSTSSSLSQS 828
Score = 34.7 bits (78), Expect = 0.094
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
Query: 159 SFHVSPRAPP-----APLASMPSSVPKTSIESLGS-------PSSLSSS-QASEPLCPLK 205
S H SP++PP +PL S SS P ++ SL PSS SSS S P PL+
Sbjct: 793 SSHESPQSPPEGPAQSPLQSPVSSFPSSTSSSLSQSSPVSSFPSSTSSSLSKSSPESPLQ 852
Query: 206 HPSHRPPAST-LSPNPTSSTESLGE 229
P +ST LSP S+ + E
Sbjct: 853 SPVISFSSSTSLSPFSEESSSPVDE 877
Score = 32.3 bits (72), Expect = 0.47
Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 13/114 (11%)
Query: 124 SSHHLPRQVRP----GPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVP 179
S H+ P+ + P Y P P G SP F SP +S+ S V
Sbjct: 576 SPHYFPQSPQGEDSLSPHYFP-----QSPPQGEDSMSPLYFPQSPLQGEEFQSSLQSPVS 630
Query: 180 KTSIESLGS-PSSLSSSQASEPLCPLKHPSH---RPPASTLSPNPTSSTESLGE 229
S + S P S S S P P++ P H PP S +P S ES E
Sbjct: 631 ICSSSTPSSLPQSFPESSQSPPEGPVQSPLHSPQSPPEGMHSQSPLQSPESAPE 684
Score = 30.0 bits (66), Expect = 2.3
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 160 FHVSPRAPPAPLASMPSSVPKTSIESLGSPSSLSSSQASE----------PLCPLKHPSH 209
F SP + +P P SV + + + S + +S Q+S P PL+ P
Sbjct: 144 FQSSPESTQSPFEGFPQSVLQIPVSAASSSTLVSIFQSSPESTQSPFEGFPQSPLQIPVS 203
Query: 210 RPPASTL------SPNPTSST-ESLGETP 231
R +STL SP T ST E ++P
Sbjct: 204 RSFSSTLLSIFQSSPERTQSTFEGFAQSP 232
Score = 28.9 bits (63), Expect = 5.2
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 181 TSIESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETPHA 233
+S SL P S S S P P + P RP +S S S +S E+P +
Sbjct: 748 SSSTSLSLPQSFPESPQSPPEGPAQSPLQRPVSSFFSYTLASLLQSSHESPQS 800
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 40.8 bits (94), Expect = 0.001
Identities = 41/137 (29%), Positives = 49/137 (35%), Gaps = 16/137 (11%)
Query: 127 HLPRQVRPGPVYKPA--PARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPKTSIE 184
HLP P P+ P P P ASP P APP PL S P+ S+
Sbjct: 256 HLPPIPPPLPLLPPCGYPGLKAEP------ASPAQDAQEPPAPPPPLPPYASCSPRASLP 309
Query: 185 SLGSPSSLSSSQASEPLCPLKHPSHRPP-------ASTLSPNPTSSTESLGETPHAGRRR 237
+ P SSS+ PL P K PS + P A P P S L + H
Sbjct: 310 APPLPGVNSSSETPPPL-PPKSPSFQAPPQKAGAQALPAPPAPPGSQPFLQKKRHGRPGA 368
Query: 238 QGSRFPQPGCANAAGRT 254
G + P A T
Sbjct: 369 GGGKLNPPPAPPARSPT 385
Score = 33.9 bits (76), Expect = 0.16
Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 125 SHHLPRQVRPGPVYKPAPAR--NHRPRGGRGKASPTSFHV------SPRAPPAPL-ASMP 175
S LP + GP+ PA R N G + +P +V +P PP PL +P
Sbjct: 132 SPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLP 191
Query: 176 SSVP-KTSIESLGSPSSLSSSQASEPLCP-LKHPSHRPPASTLSPNPTSSTES 226
SS P KT + S P + + P P P PP T P P +S S
Sbjct: 192 SSSPIKTPLVSPPGPLTKGNLPVVAPPVPCAPPPPPPPPPPTPPPLPPASVLS 244
Score = 31.2 bits (69), Expect = 1.0
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 166 APPAPLASMPSSVPKTSIESLGSPSSLSSSQASEP-LCPLKHPSHRPPASTLSP------ 218
APP P A P P P+S+ S +A +P L PL P PP L P
Sbjct: 216 APPVPCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLAPLHLPPIPPPLPLLPPCGYPGL 275
Query: 219 --NPTSSTESLGETP 231
P S + E P
Sbjct: 276 KAEPASPAQDAQEPP 290
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 40.8 bits (94), Expect = 0.001
Identities = 45/152 (29%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 123 GSSHHLPRQVRP--GPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPK 180
G P+ + P G +P RP ASP + H S + P ++ PS P
Sbjct: 451 GHPESTPKSLHPWYGITPTSSPKTKKRPAPRAPSASPLALHASRLSHSEPPSATPS--PA 508
Query: 181 TSIESLGSPSSLSSSQAS--EPLCPLKHPS----HRP--PASTLSPNPTSSTESLGE--- 229
S+ESL S S+ ++ A EP K S H P P + +S + SS S GE
Sbjct: 509 LSVESLSSESASQTAGAELLEPPAVPKSSSEPAVHAPGTPGNPVSLSTNSSLASSGELVE 568
Query: 230 ---------TPHAGRRRQGSRFPQPG--CANA 250
+P R +GS PQP C+ A
Sbjct: 569 PRVEQMPQASPGLAPRTRGSSGPQPAKPCSGA 600
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 40.4 bits (93), Expect = 0.002
Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 128 LPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMP--SSVPKTSIES 185
LP Q + P +P PAR RP + +P PR PP +P +S K I +
Sbjct: 401 LPTQKQVPPTSRPVPARVSRPAEKPIQRNPG----MPRPPPPSTRPLPPTTSSSKKPIPT 456
Query: 186 LGSPSSLSSSQASEPLCPLKHPSHRPP---ASTLSPNPT-SSTES-------LGETPHAG 234
L + +S AS+P + +H+PP A + SP PT ST S + T
Sbjct: 457 LARTEAKITSHASKP-ASARTSTHKPPPFTALSSSPAPTPGSTRSTRPPATMVPPTSGTS 515
Query: 235 RRRQGSRFPQPGCA 248
R P PG A
Sbjct: 516 TPRTAPAVPTPGSA 529
Score = 32.7 bits (73), Expect = 0.36
Identities = 33/121 (27%), Positives = 43/121 (35%), Gaps = 8/121 (6%)
Query: 117 KKLSREGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPS 176
K S S+H P P P R PTS +PR PA P
Sbjct: 470 KPASARTSTHKPPPFTALSSSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPA--VPTPG 527
Query: 177 SVPKTSIESLGSPSSLSSSQASEPLCPLK----HPSHRPPASTLS--PNPTSSTESLGET 230
S P S + +GS +S + S P P+ + P S L+ P+P S T
Sbjct: 528 SAPTGSKKPIGSEASKKAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTT 587
Query: 231 P 231
P
Sbjct: 588 P 588
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 129 PRQVRPGP-VYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPKTSIESLG 187
P P P V +P P PRGG P V P A PAPL T + +L
Sbjct: 871 PPATTPFPAVVQPYPLPVFSPRGGPQPLPPAPTSVPPAAFPAPLV--------TPMVALV 922
Query: 188 SPSSLSSSQASEPLCPLKHPSHRPPASTLSPNPTSSTESLGETP 231
P+ L + +S P L+ P+ PP + S +P+ S +L +P
Sbjct: 923 LPNYLFPTPSSYPYGALQTPAEGPP-TPASHSPSPSLPALAPSP 965
Score = 32.7 bits (73), Expect = 0.36
Identities = 36/143 (25%), Positives = 47/143 (32%), Gaps = 30/143 (20%)
Query: 142 PARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPKTS------------------- 182
P+R H R KA + H +PRA S PS VP ++
Sbjct: 829 PSRRHHCRS---KAKRSRHHQNPRAEAPCYVSHPSPVPPSTPWPTPPATTPFPAVVQPYP 885
Query: 183 ---IESLGSPSSLSSSQASEPLCPLKHPSHRPPASTLSPN---PTSSTESLG--ETPHAG 234
G P L + S P P P + + PN PT S+ G +TP G
Sbjct: 886 LPVFSPRGGPQPLPPAPTSVPPAAFPAPLVTPMVALVLPNYLFPTPSSYPYGALQTPAEG 945
Query: 235 RRRQGSRFPQPGCANAAGRTRHQ 257
S P P A H+
Sbjct: 946 PPTPASHSPSPSLPALAPSPPHR 968
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,703,580
Number of Sequences: 37866
Number of extensions: 819126
Number of successful extensions: 7658
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 822
Number of HSP's that attempted gapping in prelim test: 6056
Number of HSP's gapped (non-prelim): 2240
length of query: 277
length of database: 18,247,518
effective HSP length: 101
effective length of query: 176
effective length of database: 14,423,052
effective search space: 2538457152
effective search space used: 2538457152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.