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Search of human proteins with 239742653
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742653 PREDICTED: hypothetical protein XP_002342604 [Homo
sapiens]
(99 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754124 PREDICTED: hypothetical protein [Homo sapiens] 197 1e-51
gi|239748626 PREDICTED: hypothetical protein XP_002346747 [Homo ... 197 1e-51
gi|239742653 PREDICTED: hypothetical protein XP_002342604 [Homo ... 197 1e-51
gi|50962890 hypothetical protein LOC92070 [Homo sapiens] 32 0.14
gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo... 31 0.19
gi|4505959 POU domain, class 2, transcription factor 2 [Homo sap... 30 0.41
gi|27477127 keratin 82 [Homo sapiens] 30 0.54
gi|145580586 kintoun isoform 2 [Homo sapiens] 28 1.2
gi|145580588 kintoun isoform 1 [Homo sapiens] 28 1.2
gi|38261962 activating transcription factor 7 interacting protei... 28 1.2
gi|54873613 agrin [Homo sapiens] 28 1.6
gi|169166999 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|169166785 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|169166533 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|112421108 capicua homolog [Homo sapiens] 28 1.6
gi|19923817 peroxisomal trans-2-enoyl-CoA reductase [Homo sapiens] 28 2.0
gi|9966799 UTP3, small subunit processome component [Homo sapiens] 28 2.0
gi|224493919 zinc finger and SCAN domain containing 18 isoform 2... 27 3.5
gi|91984775 regulator of telomere elongation helicase 1 isoform ... 27 3.5
gi|7706541 regulator of telomere elongation helicase 1 isoform 1... 27 3.5
gi|19882241 immunoglobulin superfamily, DCC subclass, member 4 [... 27 4.6
gi|56711286 hypothetical protein LOC340533 [Homo sapiens] 26 6.0
gi|4503301 2,4-dienoyl CoA reductase 1 precursor [Homo sapiens] 26 6.0
gi|90991702 leucine-rich repeat kinase 1 [Homo sapiens] 26 6.0
gi|24307879 dynein, cytoplasmic 1, intermediate chain 2 [Homo sa... 26 6.0
gi|24429588 zinc finger protein 532 [Homo sapiens] 26 6.0
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|239753116 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|239747679 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
>gi|239754124 PREDICTED: hypothetical protein [Homo sapiens]
Length = 99
Score = 197 bits (501), Expect = 1e-51
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MKSMSPWMVRVRSTAHFFVFIIGVSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGV 60
MKSMSPWMVRVRSTAHFFVFIIGVSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGV
Sbjct: 1 MKSMSPWMVRVRSTAHFFVFIIGVSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGV 60
Query: 61 VVSGETSVSPSPPAAIEVGSCNTDCGSSAILLGDTRERK 99
VVSGETSVSPSPPAAIEVGSCNTDCGSSAILLGDTRERK
Sbjct: 61 VVSGETSVSPSPPAAIEVGSCNTDCGSSAILLGDTRERK 99
>gi|239748626 PREDICTED: hypothetical protein XP_002346747 [Homo
sapiens]
Length = 99
Score = 197 bits (501), Expect = 1e-51
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MKSMSPWMVRVRSTAHFFVFIIGVSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGV 60
MKSMSPWMVRVRSTAHFFVFIIGVSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGV
Sbjct: 1 MKSMSPWMVRVRSTAHFFVFIIGVSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGV 60
Query: 61 VVSGETSVSPSPPAAIEVGSCNTDCGSSAILLGDTRERK 99
VVSGETSVSPSPPAAIEVGSCNTDCGSSAILLGDTRERK
Sbjct: 61 VVSGETSVSPSPPAAIEVGSCNTDCGSSAILLGDTRERK 99
>gi|239742653 PREDICTED: hypothetical protein XP_002342604 [Homo
sapiens]
Length = 99
Score = 197 bits (501), Expect = 1e-51
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MKSMSPWMVRVRSTAHFFVFIIGVSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGV 60
MKSMSPWMVRVRSTAHFFVFIIGVSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGV
Sbjct: 1 MKSMSPWMVRVRSTAHFFVFIIGVSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGV 60
Query: 61 VVSGETSVSPSPPAAIEVGSCNTDCGSSAILLGDTRERK 99
VVSGETSVSPSPPAAIEVGSCNTDCGSSAILLGDTRERK
Sbjct: 61 VVSGETSVSPSPPAAIEVGSCNTDCGSSAILLGDTRERK 99
>gi|50962890 hypothetical protein LOC92070 [Homo sapiens]
Length = 186
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 30 SKMSTLLFFLVSPAGSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIEVGSCNTDCGSSA 89
S++ L F+ S AG+ +PG A + G G + + + SPS ++ + S T C S+
Sbjct: 124 SRIHFLRTFMCSVAGAELPGIPQATENGEGCRPARDPASSPS---SLSMASVYTQCSSAQ 180
Query: 90 IL 91
++
Sbjct: 181 LV 182
>gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo
sapiens]
Length = 1905
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 24 VSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIEVGS-CN 82
V P A + +S +F +VSPA S+V + E + V S + S SP AA S N
Sbjct: 453 VCPAASTVVSPAVFSVVSPASSAVLPAVSLEVPLTASVTSPKASPVTSPAAAFPTASPAN 512
Query: 83 TDCGSSAILLGDTRE 97
D S D E
Sbjct: 513 KDVSSFLETTADVEE 527
>gi|4505959 POU domain, class 2, transcription factor 2 [Homo
sapiens]
Length = 463
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 28 AFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGVV---VSGETSVSPSPPAAIEVGSCNTD 84
A S +ST + L S G+ P TA GG G ++ SV+P PPA + +
Sbjct: 376 ASSSLSTTVTTLSSAVGTLHPSRTAGGGGGGGGAAPPLNSIPSVTPPPPATTNSTNPSPQ 435
Query: 85 CGSSAI 90
SAI
Sbjct: 436 GSHSAI 441
>gi|27477127 keratin 82 [Homo sapiens]
Length = 513
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 23 GVSPTAFSKMSTLLFFLVSPAGSSVPGETAA---EDGGSGVVVSGETSVSPSPPAAIEVG 79
G+ P S S+ FL P G S P + +GG +V +GE V P + G
Sbjct: 434 GIGPVNISVSSSKGAFLYEPCGVSTPVLSTGVLRSNGGCSIVGTGELYVPCEPQGLLSCG 493
Query: 80 S 80
S
Sbjct: 494 S 494
>gi|145580586 kintoun isoform 2 [Homo sapiens]
Length = 789
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 44 GSSVPGETAAEDGG----------SGVVVSGETSVSPSPPAAIE 77
G + P + AEDGG SGV G+ V+P P AA E
Sbjct: 386 GEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGE 429
>gi|145580588 kintoun isoform 1 [Homo sapiens]
Length = 837
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 44 GSSVPGETAAEDGG----------SGVVVSGETSVSPSPPAAIE 77
G + P + AEDGG SGV G+ V+P P AA E
Sbjct: 386 GEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGE 429
>gi|38261962 activating transcription factor 7 interacting protein
[Homo sapiens]
Length = 1270
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 43 AGSSVPGETAAEDGGSGVVVSGE------TSVSPSPPAAIEVGSCNTDCGSSAILLGD 94
+G PG+ A D SGV+ SG+ TS PS A + + D S + GD
Sbjct: 131 SGDPAPGDLDAGDPASGVLASGDSTSGDPTSSEPSSSDAASGDATSGDAPSGDVSPGD 188
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 41 SPAGSSVPGETAAEDGGSGVVVSGE-TSVSPSPPAAIEVGSCNTDCGSSAI 90
+P+G PG+ + D + + SG+ TS P P + V + DC + I
Sbjct: 179 APSGDVSPGDATSGDATADDLSSGDPTSSDPIPGEPVPVEPISGDCAADDI 229
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 21 IIGVSPTAFSKMSTLLFFLVSPAGSS-------VPGETAAEDGGSGVV--VSGETSVSPS 71
++ V PTA S +L+ +GS+ + G+ A GGSG + + G + +P
Sbjct: 1038 VLTVPPTAPSPAPSLVASAFGESGSTDGSSDEELSGDQEASGGGSGGLEPLEGSSVATPG 1097
Query: 72 PPAAIEVGSC 81
PP +E SC
Sbjct: 1098 PP--VERASC 1105
>gi|169166999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 44 GSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIEVGSCNTDCGSSAILLG 93
G++V A EDGG+GVV G AA+ G D GS + G
Sbjct: 68 GAAVVSCGAGEDGGAGVVAEGVGG------AAVVSGGAEADDGSRVVAEG 111
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 44 GSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIEVGSCNTDCGSSAILLG 93
G++V A EDGG+GVV G AA+ G D G+ + G
Sbjct: 114 GAAVVSGGAEEDGGAGVVAGGVGG------AAVVSGGAEEDGGACVVAEG 157
>gi|169166785 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 44 GSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIEVGSCNTDCGSSAILLG 93
G++V A EDGG+GVV G AA+ G D GS + G
Sbjct: 66 GAAVVSCGAGEDGGAGVVAEGVGG------AAVVSGGAEADDGSRVVAEG 109
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 44 GSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIEVGSCNTDCGSSAILLG 93
G++V A EDGG+GVV G AA+ G D G+ + G
Sbjct: 112 GAAVVSGGAEEDGGAGVVAGGVGG------AAVVSGGAEEDGGACVVAEG 155
>gi|169166533 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 44 GSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIEVGSCNTDCGSSAILLG 93
G++V A EDGG+GVV G AA+ G D GS + G
Sbjct: 66 GAAVVSCGAGEDGGAGVVAEGVGG------AAVVSGGAEADDGSRVVAEG 109
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 44 GSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIEVGSCNTDCGSSAILLG 93
G++V A EDGG+GVV G AA+ G D G+ + G
Sbjct: 112 GAAVVSGGAEEDGGAGVVAGGVGG------AAVVSGGAEEDGGACVVAEG 155
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 57 GSGVVVSGETSVSPSPPAAIEVGSCNTDCGSSAILLGDTRERK 99
G G+ GE PSP A V + SS GDT ERK
Sbjct: 1280 GQGLENRGEPPTPPSPAPAPAVAPGGSSESSSGRAAGDTPERK 1322
>gi|19923817 peroxisomal trans-2-enoyl-CoA reductase [Homo sapiens]
Length = 303
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 31 KMSTLLFFLVSPAGSSVPGETAAEDGG 57
++S+++ FL+SPA S + G++ DGG
Sbjct: 238 EVSSVVCFLLSPAASFITGQSVDVDGG 264
>gi|9966799 UTP3, small subunit processome component [Homo sapiens]
Length = 479
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 43 AGSSVPGETAAEDGGSGVVVSGETSVSPS 71
AG E A +DGGS V E SV PS
Sbjct: 98 AGEEEEEENADDDGGSSVQSEAEASVDPS 126
>gi|224493919 zinc finger and SCAN domain containing 18 isoform 2
[Homo sapiens]
Length = 374
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 26 PTAFSKMSTLLFFLVS--PAGSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIEVGSCNT 83
P A S++ T LV P GSS+PG E G + V P P G
Sbjct: 120 PDAASRLDTEELRLVERDPQGSSLPGGRRQESAGCACEEAAPAGVLPELPTEAPPGDALA 179
Query: 84 D 84
D
Sbjct: 180 D 180
>gi|91984775 regulator of telomere elongation helicase 1 isoform 2
[Homo sapiens]
Length = 1300
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 1 MKSMSPWMVRVRSTAHFFVFIIGVSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGV 60
M+++ P V RS F I + ST FL G + G ++ G GV
Sbjct: 582 MEALKPLFVEPRSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGV 641
Query: 61 VVSGETSVSPSPP 73
+V+G P PP
Sbjct: 642 IVTG----LPYPP 650
>gi|7706541 regulator of telomere elongation helicase 1 isoform 1
[Homo sapiens]
Length = 1219
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 1 MKSMSPWMVRVRSTAHFFVFIIGVSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGV 60
M+++ P V RS F I + ST FL G + G ++ G GV
Sbjct: 582 MEALKPLFVEPRSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGV 641
Query: 61 VVSGETSVSPSPP 73
+V+G P PP
Sbjct: 642 IVTG----LPYPP 650
>gi|19882241 immunoglobulin superfamily, DCC subclass, member 4 [Homo
sapiens]
Length = 1250
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 41 SPAGSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIEVGS 80
SP S+PG ++ G+ + S PSPPAA E+ S
Sbjct: 981 SPHRESLPGLSSTATPGNPALYSRARLGPPSPPAAHELES 1020
>gi|56711286 hypothetical protein LOC340533 [Homo sapiens]
Length = 1516
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 37 FFLVSPAG-SSVPGETAAEDGGS--GVVVSGETSVSPSPPAAIEVGSCNTDCGSSAI 90
F ++ PAG S++ G+ + + G + + +V P P +++VG N D + A+
Sbjct: 123 FAIMEPAGMSALNGDCLMQPSRTCLGCFMESKDAVDPEPGISLKVGDLNRDYETCAV 179
>gi|4503301 2,4-dienoyl CoA reductase 1 precursor [Homo sapiens]
Length = 335
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 31 KMSTLLFFLVSPAGSSVPGETAAEDGGSGVVVSGE 65
+++ L FL S S + G DGG V++SGE
Sbjct: 276 ELANLAAFLCSDYASWINGAVIKFDGGEEVLISGE 310
>gi|90991702 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 2015
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 11 VRSTAHFFVFIIGVSPTAFSKMSTLLFFLVSPAGSSVPGETA 52
+R A+F +I+ SP + F SP SS PG+TA
Sbjct: 214 LRHGAYFCSYILLDSPDPSKHLLRKYFIEASPLPSSYPGKTA 255
>gi|24307879 dynein, cytoplasmic 1, intermediate chain 2 [Homo
sapiens]
Length = 638
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 40 VSPAGSSV--PGETAAEDGGSGVVVSGETSVSPSPPAAIEVGSCNTDCGSSAILLG 93
+SP+ SV P E ++D G G V S T + P+ +++ S ++D G I LG
Sbjct: 86 MSPSSKSVSTPSEAGSQDSGDGAVGS-RTLHWDTDPSVLQLHS-DSDLGRGPIKLG 139
>gi|24429588 zinc finger protein 532 [Homo sapiens]
Length = 1301
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 24 VSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIE 77
VSP+ S ST L SP G+ T + G +G V+S +S +P ++
Sbjct: 692 VSPS--SNTSTSTSTLQSPVGAGTHTVTKIQSGITGTVISAPSSTPITPAMPLD 743
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 38 FLVSPAGSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIEVGSCNTDCGSSAILLGDTRE 97
F P+G S P G S +++SP PP + + S + S LL R
Sbjct: 70 FSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRS 129
Query: 98 R 98
R
Sbjct: 130 R 130
>gi|239753116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 24 VSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGVVVSGETSVSPS 71
VS +++ L FLV+ S PGE A+ G+G V E + S
Sbjct: 23 VSKELARQVTGFLVFLVTKNHSQTPGERASSLSGAGPAVLTEFAAPSS 70
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 38 FLVSPAGSSVPGETAAEDGGSGVVVSGETSVSPSPPAAIEVGSCNTDCGSSAILLGDTRE 97
F P+G S P G S +++SP PP + + S + S LL R
Sbjct: 70 FSSGPSGPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRS 129
Query: 98 R 98
R
Sbjct: 130 R 130
>gi|239747679 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 24 VSPTAFSKMSTLLFFLVSPAGSSVPGETAAEDGGSGVVVSGETSVSPS 71
VS +++ L FLV+ S PGE A+ G+G V E + S
Sbjct: 23 VSKELARQVTGFLVFLVTKNHSQTPGERASSLSGAGPAVLTEFAAPSS 70
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,963,772
Number of Sequences: 37866
Number of extensions: 173286
Number of successful extensions: 787
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 42
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.