Guide to the Human Genome
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Name: LOC100290390 Sequence: fasta or formatted (99aa) NCBI GI: 239748626
Description:

PREDICTED: hypothetical protein XP_002346747

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1          8           2
 C cysteine            2.0          2           1
 D aspartate           3.0          3           1
 E glutamate           5.1          5           1
 F phenylalanine       6.1          6           2
 G glycine            10.1         10           2
 H histidine           1.0          1           1
 I isoleucine          4.0          4           2
 K lysine              3.0          3           1
 L leucine             5.1          5           2
 M methionine          4.0          4           1
 N asparagine          1.0          1           1
 P proline             7.1          7           2
 Q glutamine           0.0          0           0
 R arginine            4.0          4           1
 S serine             17.2         17           2
 T threonine           7.1          7           1
 V valine             11.1         11           3
 W tryptophan          1.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346747 
LOC100292365          1.000   PREDICTED: hypothetical protein 
LOC100287022          1.000   PREDICTED: hypothetical protein XP_002342604 
C4orf42               0.041   hypothetical protein LOC92070 
BAZ2A                 0.035   bromodomain adjacent to zinc finger domain, 2A [Homo...
POU2F2                0.029   POU domain, class 2, transcription factor 2 
KRT82                 0.029   keratin 82 
C14orf104             0.017   kintoun isoform 2 
C14orf104             0.017   kintoun isoform 1 
ATF7IP                0.017   activating transcription factor 7 interacting protei...
AGRN                  0.017   agrin 
LOC100129410          0.017   PREDICTED: hypothetical protein 
LOC100129410          0.017   PREDICTED: hypothetical protein 
LOC100129410          0.017   PREDICTED: hypothetical protein 
CIC                   0.017   capicua homolog 
PECR                  0.017   peroxisomal trans-2-enoyl-CoA reductase 
UTP3                  0.017   UTP3, small subunit processome component 
ZSCAN18               0.012   zinc finger and SCAN domain containing 18 isoform 2...
RTEL1                 0.012   regulator of telomere elongation helicase 1 isoform ...
RTEL1                 0.012   regulator of telomere elongation helicase 1 isoform 1...
IGDCC4                0.012   immunoglobulin superfamily, DCC subclass, member 4 [...
KIAA2022              0.006   hypothetical protein LOC340533 
DECR1                 0.006   2,4-dienoyl CoA reductase 1 precursor 
LRRK1                 0.006   leucine-rich repeat kinase 1 
DYNC1I2               0.006   dynein, cytoplasmic 1, intermediate chain 2 
ZNF532                0.006   zinc finger protein 532 
LOC100293644          0.006   PREDICTED: hypothetical protein 
LOC100292891          0.006   PREDICTED: hypothetical protein 
LOC100287563          0.006   PREDICTED: hypothetical protein 
LOC100288316          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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