Guide to the Human Genome
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Search of human proteins with 239742361

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
sapiens]
         (215 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]           454   e-128
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ...   454   e-128
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ...   454   e-128
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]             44   1e-04
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]             40   0.001
gi|239754297 PREDICTED: hypothetical protein [Homo sapiens]            40   0.002
gi|239748836 PREDICTED: hypothetical protein XP_002346833 [Homo ...    40   0.002
gi|239742863 PREDICTED: hypothetical protein XP_002342665 [Homo ...    40   0.002
gi|126352608 elastin isoform e precursor [Homo sapiens]                39   0.003
gi|126352440 elastin isoform a precursor [Homo sapiens]                39   0.003
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]            38   0.007
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ...    38   0.007
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]            38   0.007
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]          38   0.007
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    37   0.010
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    37   0.010
gi|239754772 PREDICTED: hypothetical protein [Homo sapiens]            37   0.010
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ...    37   0.010
gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo ...    37   0.010
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ...    37   0.010
gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo ...    37   0.010
gi|239509103 PREDICTED: hypothetical protein [Homo sapiens]            37   0.010
gi|169217659 PREDICTED: similar to ectonucleotide pyrophosphatas...    37   0.013
gi|169167316 PREDICTED: similar to ectonucleotide pyrophosphatas...    37   0.013
gi|126352700 elastin isoform b precursor [Homo sapiens]                36   0.022
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]            36   0.022
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]            36   0.022
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]           36   0.022
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ...    36   0.022
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]           36   0.022

>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 215

 Score =  454 bits (1167), Expect = e-128
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60
           MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA
Sbjct: 1   MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60

Query: 61  GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
           GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL
Sbjct: 61  GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120

Query: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180
           LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL
Sbjct: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180

Query: 181 AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS 215
           AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS
Sbjct: 181 AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS 215


>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
           sapiens]
          Length = 215

 Score =  454 bits (1167), Expect = e-128
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60
           MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA
Sbjct: 1   MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60

Query: 61  GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
           GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL
Sbjct: 61  GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120

Query: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180
           LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL
Sbjct: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180

Query: 181 AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS 215
           AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS
Sbjct: 181 AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS 215


>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
           sapiens]
          Length = 215

 Score =  454 bits (1167), Expect = e-128
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60
           MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA
Sbjct: 1   MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60

Query: 61  GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
           GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL
Sbjct: 61  GRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120

Query: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180
           LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL
Sbjct: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180

Query: 181 AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS 215
           AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS
Sbjct: 181 AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALAS 215


>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
          Length = 352

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 54/189 (28%), Positives = 68/189 (35%), Gaps = 35/189 (18%)

Query: 4   SEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRL 63
           ++ G RGCG  G         P P     G  G R R G     G R  G GAAL +   
Sbjct: 44  ADTGVRGCGARG---------PAPLLASAG--GGRARDG---TWGVRTKGSGAALPS--- 86

Query: 64  RPRRRWAPGAGPVAACRPRAAAAGG---PTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
           RP  R AP     +   P   A GG   P  G+ RG+   V    R R            
Sbjct: 87  RPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSR------------ 134

Query: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGL 180
              S S +      K    SR+ T R   A T +GR+  + PG  E    +   R R   
Sbjct: 135 ---SRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSS 191

Query: 181 AARLGSRPS 189
           ++   S  S
Sbjct: 192 SSSSSSSSS 200



 Score = 30.8 bits (68), Expect = 0.91
 Identities = 48/145 (33%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 45  EAQGARWPGGGAALLAGRLRPRRRWAPGAGPVAACRPRAA----AAGGPTDGKGRGS--- 97
           E  G     GGA    GRL PR   APGA  + AC  RAA    AA   T  +G G+   
Sbjct: 2   ERAGPAGEEGGAR--EGRLLPR---APGAWVLRACAERAALEVGAASADTGVRGCGARGP 56

Query: 98  --CQRVAGPLRWRNLLFLPRLAG---ALLSLSVSLTLSLPGWKFPLTSREHTDRRTHART 152
                 AG  R R+  +  R  G   AL S   S     P    P    E   R   +  
Sbjct: 57  APLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKA-RGGLSGP 115

Query: 153 QRGREVGSLPGVGEARTSRGAVRPR 177
           Q GR  G++  VG  + SR   R R
Sbjct: 116 QGGRARGAMAHVGSRKRSRSRSRSR 140


>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
          Length = 360

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 49/163 (30%), Positives = 60/163 (36%), Gaps = 35/163 (21%)

Query: 4   SEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRL 63
           ++ G RGCG  G         P P     G  G R R G     G R  G GAAL +   
Sbjct: 44  ADTGVRGCGARG---------PAPLLASAG--GGRARDG---TWGVRTKGSGAALPS--- 86

Query: 64  RPRRRWAPGAGPVAACRPRAAAAGG---PTDGKGRGSCQRVAGPLRWRNLLFLPRLAGAL 120
           RP  R AP     +   P   A GG   P  G+ RG+   V    R R            
Sbjct: 87  RPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSR------------ 134

Query: 121 LSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPG 163
              S S +      K    SR+ T R   A T +GR+  + PG
Sbjct: 135 ---SRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPG 174



 Score = 30.8 bits (68), Expect = 0.91
 Identities = 48/145 (33%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 45  EAQGARWPGGGAALLAGRLRPRRRWAPGAGPVAACRPRAA----AAGGPTDGKGRGS--- 97
           E  G     GGA    GRL PR   APGA  + AC  RAA    AA   T  +G G+   
Sbjct: 2   ERAGPAGEEGGAR--EGRLLPR---APGAWVLRACAERAALEVGAASADTGVRGCGARGP 56

Query: 98  --CQRVAGPLRWRNLLFLPRLAG---ALLSLSVSLTLSLPGWKFPLTSREHTDRRTHART 152
                 AG  R R+  +  R  G   AL S   S     P    P    E   R   +  
Sbjct: 57  APLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKA-RGGLSGP 115

Query: 153 QRGREVGSLPGVGEARTSRGAVRPR 177
           Q GR  G++  VG  + SR   R R
Sbjct: 116 QGGRARGAMAHVGSRKRSRSRSRSR 140


>gi|239754297 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 175

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 37/99 (37%), Positives = 39/99 (39%), Gaps = 21/99 (21%)

Query: 11  CGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRLRPRRRWA 70
           C    GRTWA        SPE    G R  R        RWP G  A     L P     
Sbjct: 49  CSAPAGRTWA--------SPETFSSGSRRAR--------RWPCGAPACTR-TLSPALAAR 91

Query: 71  P-GAGPVAACRPRAAAAGGPTDGKGRGSC--QRVAGPLR 106
           P G GP A  RPR      P D + RG C  QR+  PLR
Sbjct: 92  PAGRGPCAG-RPRRCGCRDPADSRARGCCQPQRLDVPLR 129


>gi|239748836 PREDICTED: hypothetical protein XP_002346833 [Homo
           sapiens]
          Length = 175

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 37/99 (37%), Positives = 39/99 (39%), Gaps = 21/99 (21%)

Query: 11  CGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRLRPRRRWA 70
           C    GRTWA        SPE    G R  R        RWP G  A     L P     
Sbjct: 49  CSAPAGRTWA--------SPETFSSGSRRAR--------RWPCGAPACTR-TLSPALAAR 91

Query: 71  P-GAGPVAACRPRAAAAGGPTDGKGRGSC--QRVAGPLR 106
           P G GP A  RPR      P D + RG C  QR+  PLR
Sbjct: 92  PAGRGPCAG-RPRRCGCRDPADSRARGCCQPQRLDVPLR 129


>gi|239742863 PREDICTED: hypothetical protein XP_002342665 [Homo
           sapiens]
          Length = 175

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 37/99 (37%), Positives = 39/99 (39%), Gaps = 21/99 (21%)

Query: 11  CGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRLRPRRRWA 70
           C    GRTWA        SPE    G R  R        RWP G  A     L P     
Sbjct: 49  CSAPAGRTWA--------SPETFSSGSRRAR--------RWPCGAPACTR-TLSPALAAR 91

Query: 71  P-GAGPVAACRPRAAAAGGPTDGKGRGSC--QRVAGPLR 106
           P G GP A  RPR      P D + RG C  QR+  PLR
Sbjct: 92  PAGRGPCAG-RPRRCGCRDPADSRARGCCQPQRLDVPLR 129


>gi|126352608 elastin isoform e precursor [Homo sapiens]
          Length = 705

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 45/158 (28%), Positives = 59/158 (37%), Gaps = 22/158 (13%)

Query: 52  PGGGAALLAGRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLL 111
           PGG    + G + P   + PGAG          A GG   G G    + V G L      
Sbjct: 26  PGGVPGAIPGGV-PGGVFYPGAG--------LGALGGGALGPGGKPLKPVPGGLAG---- 72

Query: 112 FLPRLAGALLSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSR 171
                AG    L     ++ PG   P    +      +   + G  +G +PGVG    S 
Sbjct: 73  -----AGLGAGLGAFPAVTFPGALVPGGVADAA--AAYKAAKAGAGLGGVPGVGGLGVSA 125

Query: 172 GAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGRRGP 209
           GAV P+PG   + G  P   L G   G  +  PG R P
Sbjct: 126 GAVVPQPGAGVKPGKVPGVGLPGVYPGGVL--PGARFP 161



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 7   GWRGCGGLGGRTWATRPLPGP-----HSPEFGLPGWRVRRGRREAQGARWPGGG---AAL 58
           G  G GGLG    A  P PG        P  GLPG  V  G     GAR+PG G      
Sbjct: 114 GVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPG--VYPG-GVLPGARFPGVGVLPGVP 170

Query: 59  LAGRLRPRRRWAPGAGPVAACRPRAAAAGGPTDG 92
               ++P+   APG G   A  P     GGP  G
Sbjct: 171 TGAGVKPK---APGVGGAFAGIPGVGPFGGPQPG 201


>gi|126352440 elastin isoform a precursor [Homo sapiens]
          Length = 724

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 45/158 (28%), Positives = 59/158 (37%), Gaps = 22/158 (13%)

Query: 52  PGGGAALLAGRLRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLL 111
           PGG    + G + P   + PGAG          A GG   G G    + V G L      
Sbjct: 26  PGGVPGAIPGGV-PGGVFYPGAG--------LGALGGGALGPGGKPLKPVPGGLAG---- 72

Query: 112 FLPRLAGALLSLSVSLTLSLPGWKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSR 171
                AG    L     ++ PG   P    +      +   + G  +G +PGVG    S 
Sbjct: 73  -----AGLGAGLGAFPAVTFPGALVPGGVADAA--AAYKAAKAGAGLGGVPGVGGLGVSA 125

Query: 172 GAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGRRGP 209
           GAV P+PG   + G  P   L G   G  +  PG R P
Sbjct: 126 GAVVPQPGAGVKPGKVPGVGLPGVYPGGVL--PGARFP 161



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 7   GWRGCGGLGGRTWATRPLPGP-----HSPEFGLPGWRVRRGRREAQGARWPGGG---AAL 58
           G  G GGLG    A  P PG        P  GLPG  V  G     GAR+PG G      
Sbjct: 114 GVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPG--VYPG-GVLPGARFPGVGVLPGVP 170

Query: 59  LAGRLRPRRRWAPGAGPVAACRPRAAAAGGPTDG 92
               ++P+   APG G   A  P     GGP  G
Sbjct: 171 TGAGVKPK---APGVGGAFAGIPGVGPFGGPQPG 201


>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 466

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 58/201 (28%), Positives = 70/201 (34%), Gaps = 25/201 (12%)

Query: 7   GWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGAR--WPGGGAALLAGRLR 64
           G + CGG    +   RPL    +   G        GR    G R   PGGG +  AG  R
Sbjct: 129 GAQSCGGPAPASALRRPLTQWDASGGG--------GRASHSGPRAGTPGGGRSSRAGARR 180

Query: 65  PRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPR--LAGALLS 122
                     P++ C P     G     +G GS    +G       L+      AGA   
Sbjct: 181 KT--------PLSLC-PLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQ 231

Query: 123 LSVSLTLSLPGWKFP----LTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRP 178
           +  S   + PG   P    L     T  R H   QR R          ART     R RP
Sbjct: 232 VRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARP 291

Query: 179 GLAARLGSRPSGPLRGAGRGA 199
           G  A  GS P   LRG G G+
Sbjct: 292 GKPAPRGSAPPARLRGGGGGS 312


>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
           sapiens]
          Length = 935

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 59/205 (28%), Positives = 72/205 (35%), Gaps = 36/205 (17%)

Query: 16  GRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRLRPRRRWAPGAGP 75
           G      P P   SP   LPG          Q A  P G       R RP   W+P A  
Sbjct: 707 GEAERRHPPPCHKSPALKLPGMTTGA---TTQTATLPDGQT----DRARP---WSPPAPG 756

Query: 76  VAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLSLSVSLTLSLPGWK 135
            +  R R A   GP  G G    +R     R R+     R           LT S  G +
Sbjct: 757 ESRDRARGAGQPGPGSGSG---AERAGPERRARDTQTRTR--------RDKLTDSARGGR 805

Query: 136 FPLTS----REHTDRRTHARTQRG--REVGSLPGVGEARTSRGAVRPRPGLAARLGSRPS 189
             LT+    R  + RR    T +G  R   S    GE+R      RP P  +A   + PS
Sbjct: 806 ARLTAGRRVRRESGRRRAGATSQGAIRRAASRARKGESR------RPLPANSAGRPALPS 859

Query: 190 GPLRGAGRGA---RVRRPGRRGPCG 211
                + RG+   R  RP R  P G
Sbjct: 860 PAAARSARGSWGLRASRPSRAAPRG 884


>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 411

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 54/194 (27%), Positives = 67/194 (34%), Gaps = 8/194 (4%)

Query: 17  RTWATRPLPGPHSPEFGLPGWRV---RRGRREAQGARWPGGGAALLAGRLRPRRRWAPGA 73
           R  A +P  GPH+P    P          R  A  A  P    +L A    PR  W P A
Sbjct: 9   RRRAAQPAVGPHAPPSATPRHPTPPHATLRPAAAPAHSPQSLQSLNAPPSPPRHPWTPEA 68

Query: 74  GPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLSLSVSLTLSLPG 133
                C+ +     G  + +GR S ++  GP         PR   A L     L  SLP 
Sbjct: 69  MGTGGCQGKVKFFLGIRE-RGRSS-RKHQGPRELGRPPHPPRARSATLYPHPKLGSSLPF 126

Query: 134 WKFPLTSREHTDRRTHARTQRGREVGSLPGVGEARTSRGAVRPRPGLAARLGSRPSGPLR 193
             F   S         A  +  R     PG G    +R A   +PGL+A  G        
Sbjct: 127 TPFRAMSTFPGVGAGDALPRLPRAGTEAPGKGAREGTRRAPVRKPGLSAGAGIWDP---N 183

Query: 194 GAGRGARVRRPGRR 207
               G R  RPG R
Sbjct: 184 AVAAGPRPGRPGLR 197


>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
          Length = 430

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 35/96 (36%), Positives = 41/96 (42%), Gaps = 14/96 (14%)

Query: 10  GCGGLGGRTWATRPLPGPHS-PEFGLPGWRVRRGRREAQGARWPGGGA-ALLAGRLRPRR 67
           GCG  G      RP PG  + P  G      RRG+    G+  P  GA  L  G   PRR
Sbjct: 26  GCGSPGRGRRGPRPGPGDEAAPALG------RRGK----GSGGPEAGADGLSRGERGPRR 75

Query: 68  RWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAG 103
              P      A  PRA+ AG  +DG G G   R +G
Sbjct: 76  AAVPELSAQPAGSPRASLAG--SDGGGGGGSARSSG 109


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 35/101 (34%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 3   KSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGR 62
           K E G  G  G  G        PGP  P  GLPG R R G   A GAR   G      G 
Sbjct: 299 KGEAGAPGVKGESGSP-GENGSPGPMGPR-GLPGERGRTGPAGAAGARGNDG----QPGP 352

Query: 63  LRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAG 103
             P     P  GP     P A    GPT  +G    Q   G
Sbjct: 353 AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRG 393



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 71/228 (31%), Positives = 79/228 (34%), Gaps = 49/228 (21%)

Query: 7   GWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRLRPR 66
           G RG  G  G T A  P PGP  P           G R  QGA  P G   L      P 
Sbjct: 627 GLRGLPGKDGETGAAGP-PGPAGPA----------GERGEQGAPGPSGFQGLPGPPGPPG 675

Query: 67  RRWAPGAGPVAACRPRAAAAG--GPTDGKG----RGS--CQRVAGPLRWRNLLFLPRLAG 118
               PG   V      A A G  GP   +G    RGS   Q + GP        LP   G
Sbjct: 676 EGGKPGDQGVPG---EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG------LPGTPG 726

Query: 119 ALLSLSVSLTLSLPGWKFPLTSREHTDRRTHA-----RTQRGREVGS-----LPGVGEAR 168
                  S     PG + P   +     R  A     +  RG +VG       PG    R
Sbjct: 727 TDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRG-DVGEKGPEGAPGKDGGR 785

Query: 169 TSRGAVRPRPGLAARLGSR----PSGPLRGAG-RGARVRRPGRRGPCG 211
              G + P PG A   G +    P GP   AG RGA    PG RG  G
Sbjct: 786 GLTGPIGP-PGPAGANGEKGEVGPPGPAGSAGARGA----PGERGETG 828


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 35/101 (34%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 3   KSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGR 62
           K E G  G  G  G        PGP  P  GLPG R R G   A GAR   G      G 
Sbjct: 230 KGEAGAPGVKGESGSP-GENGSPGPMGPR-GLPGERGRTGPAGAAGARGNDG----QPGP 283

Query: 63  LRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAG 103
             P     P  GP     P A    GPT  +G    Q   G
Sbjct: 284 AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRG 324



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 71/228 (31%), Positives = 79/228 (34%), Gaps = 49/228 (21%)

Query: 7   GWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLAGRLRPR 66
           G RG  G  G T A  P PGP  P           G R  QGA  P G   L      P 
Sbjct: 558 GLRGLPGKDGETGAAGP-PGPAGPA----------GERGEQGAPGPSGFQGLPGPPGPPG 606

Query: 67  RRWAPGAGPVAACRPRAAAAG--GPTDGKG----RGS--CQRVAGPLRWRNLLFLPRLAG 118
               PG   V      A A G  GP   +G    RGS   Q + GP        LP   G
Sbjct: 607 EGGKPGDQGVPG---EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG------LPGTPG 657

Query: 119 ALLSLSVSLTLSLPGWKFPLTSREHTDRRTHA-----RTQRGREVGS-----LPGVGEAR 168
                  S     PG + P   +     R  A     +  RG +VG       PG    R
Sbjct: 658 TDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRG-DVGEKGPEGAPGKDGGR 716

Query: 169 TSRGAVRPRPGLAARLGSR----PSGPLRGAG-RGARVRRPGRRGPCG 211
              G + P PG A   G +    P GP   AG RGA    PG RG  G
Sbjct: 717 GLTGPIGP-PGPAGANGEKGEVGPPGPAGSAGARGA----PGERGETG 759


>gi|239754772 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 95

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88
          R RR RR+AQG R  GGG    AG      + RP     PG G   A  PRAA+     G
Sbjct: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82

Query: 89 PTDGKG 94
            DG+G
Sbjct: 83 SRDGEG 88


>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
           sapiens]
          Length = 492

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 35/87 (40%), Positives = 38/87 (43%), Gaps = 15/87 (17%)

Query: 2   RKSEWGWRGCG--GLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALL 59
           R+   G RG G  G G R  A   LP P  P F       R GR E  G    G  A + 
Sbjct: 324 REKLGGKRGVGRKGQGTRLGAPHSLPPP--PPF-------RTGRGEGGGG---GSRADVT 371

Query: 60  AGRLRP-RRRWAPGAGPVAACRPRAAA 85
           AGR RP RRRW P     +  RP A A
Sbjct: 372 AGRARPRRRRWEPLRAQRSGARPGAPA 398


>gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo
          sapiens]
          Length = 95

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88
          R RR RR+AQG R  GGG    AG      + RP     PG G   A  PRAA+     G
Sbjct: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82

Query: 89 PTDGKG 94
            DG+G
Sbjct: 83 SRDGEG 88


>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
           sapiens]
          Length = 492

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 35/87 (40%), Positives = 38/87 (43%), Gaps = 15/87 (17%)

Query: 2   RKSEWGWRGCG--GLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALL 59
           R+   G RG G  G G R  A   LP P  P F       R GR E  G    G  A + 
Sbjct: 324 REKLGGKRGVGRKGQGTRLGAPHSLPPP--PPF-------RTGRGEGGGG---GSRADVT 371

Query: 60  AGRLRP-RRRWAPGAGPVAACRPRAAA 85
           AGR RP RRRW P     +  RP A A
Sbjct: 372 AGRARPRRRRWEPLRAQRSGARPGAPA 398


>gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo
          sapiens]
          Length = 95

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88
          R RR RR+AQG R  GGG    AG      + RP     PG G   A  PRAA+     G
Sbjct: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82

Query: 89 PTDGKG 94
            DG+G
Sbjct: 83 SRDGEG 88


>gi|239509103 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 95

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88
          R RR RR+AQG R  GGG    AG      + RP     PG G   A  PRAA+     G
Sbjct: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82

Query: 89 PTDGKG 94
            DG+G
Sbjct: 83 SRDGEG 88


>gi|169217659 PREDICTED: similar to ectonucleotide
           pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
          Length = 542

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 155 GREVGSLPGVGEARTSRGAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPG--RRGPCGA 212
           G     +PG+   R +R    PRP   AR+   PS P  G G   R+ RPG   R  CGA
Sbjct: 476 GAPATCVPGLSPVRAARPG--PRPWGLARVARTPSAPRAGGGSWGRLHRPGGQTRVRCGA 533


>gi|169167316 PREDICTED: similar to ectonucleotide
           pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
          Length = 542

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 155 GREVGSLPGVGEARTSRGAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPG--RRGPCGA 212
           G     +PG+   R +R    PRP   AR+   PS P  G G   R+ RPG   R  CGA
Sbjct: 476 GAPATCVPGLSPVRAARPG--PRPWGLARVARTPSAPRAGGGSWGRLHRPGGQTRVRCGA 533


>gi|126352700 elastin isoform b precursor [Homo sapiens]
          Length = 677

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 155 GREVGSLPGVGEARTSRGAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGRRGP 209
           G  +G +PGVG    S GAV P+PG   + G  P   L G   G  +  PG R P
Sbjct: 99  GAGLGGVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPGVYPGGVL--PGARFP 151



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 7   GWRGCGGLGGRTWATRPLPGP-----HSPEFGLPGWRVRRGRREAQGARWPGGG---AAL 58
           G  G GGLG    A  P PG        P  GLPG  V  G     GAR+PG G      
Sbjct: 104 GVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPG--VYPG-GVLPGARFPGVGVLPGVP 160

Query: 59  LAGRLRPRRRWAPGAGPVAACRPRAAAAGGPTDG 92
               ++P+   APG G   A  P     GGP  G
Sbjct: 161 TGAGVKPK---APGVGGAFAGIPGVGPFGGPQPG 191


>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 445

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)

Query: 151 RTQRGREVGSLPGVGEARTSRGAVRPRP-GLAARLGSRPSGPLRGAGRGARVRR-----P 204
           RT+ GRE  ++ G        G++RP   G  AR G    G ++GA  G R+R      P
Sbjct: 134 RTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQ---GQVQGAAPGRRLRGEPKTPP 190

Query: 205 GRRGPCGALAS 215
           GR GP G + S
Sbjct: 191 GRSGPSGGVRS 201


>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 64/227 (28%), Positives = 76/227 (33%), Gaps = 58/227 (25%)

Query: 35  PGWRVRRGRREAQGARWPGGGAALLAGRLRPRRRWA----------------------PG 72
           P  R  RG R   G    GGG A +  R R    WA                      PG
Sbjct: 30  PAARSPRGPRAGGGGGDAGGGGAPVR-RARGGGCWARAYQDARCFGRGEGGDLQVSSGPG 88

Query: 73  AGPVAACRPRAAAAGGPTD-GKGRGSCQRVAGP-----------LRWRNLLFLPRLAGAL 120
           A P A  R  A +A G  D   G G   R+  P           LR R+   LP  A  L
Sbjct: 89  AAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSASFSNQTRLRRRSASALP--APRL 146

Query: 121 LSLSVSLTLSLPGWKFP----------------LTSREHTDR-RTHARTQRGREVG---- 159
                S   S PG + P                L +R+     R+ +    GR+      
Sbjct: 147 CPQRASPGCSSPGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAFVAGRDAALACA 206

Query: 160 SLPGVGEARTSRGAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGR 206
            LP       +R  +R R G   R   RP GP R   RGAR  RP R
Sbjct: 207 QLPRRPRGAGARRGMRRRLGAGERPAPRPRGPPRAPARGARWLRPRR 253


>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 37/114 (32%), Positives = 42/114 (36%), Gaps = 25/114 (21%)

Query: 12  GGLGGR----------TWATRPLPGPHSPEFGLPGWRVR---RGRREAQG------ARWP 52
           G  GGR          T A  P PGP +P    P +  R   RGR E++G      A  P
Sbjct: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLP 247

Query: 53  GGGAALLAGRLRPRRRWAPGAGPVAACRPR------AAAAGGPTDGKGRGSCQR 100
             G A       P  R     G  A  RPR      A  +G  T G  RG C R
Sbjct: 248 LPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDR 301


>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
           sapiens]
          Length = 255

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 64/227 (28%), Positives = 76/227 (33%), Gaps = 58/227 (25%)

Query: 35  PGWRVRRGRREAQGARWPGGGAALLAGRLRPRRRWA----------------------PG 72
           P  R  RG R   G    GGG A +  R R    WA                      PG
Sbjct: 30  PAARSPRGPRAGGGGGDAGGGGAPVR-RARGGGCWARAYQDARCFGRGEGGDLQVSSGPG 88

Query: 73  AGPVAACRPRAAAAGGPTD-GKGRGSCQRVAGP-----------LRWRNLLFLPRLAGAL 120
           A P A  R  A +A G  D   G G   R+  P           LR R+   LP  A  L
Sbjct: 89  AAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSASFSNQTRLRRRSASALP--APRL 146

Query: 121 LSLSVSLTLSLPGWKFP----------------LTSREHTDR-RTHARTQRGREVG---- 159
                S   S PG + P                L +R+     R+ +    GR+      
Sbjct: 147 CPQRASPGCSSPGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAFVAGRDAALACA 206

Query: 160 SLPGVGEARTSRGAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGR 206
            LP       +R  +R R G   R   RP GP R   RGAR  RP R
Sbjct: 207 QLPRRPRGAGARRGMRRRLGAGERPAPRPRGPPRAPARGARWLRPRR 253


>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 37/114 (32%), Positives = 42/114 (36%), Gaps = 25/114 (21%)

Query: 12  GGLGGR----------TWATRPLPGPHSPEFGLPGWRVR---RGRREAQG------ARWP 52
           G  GGR          T A  P PGP +P    P +  R   RGR E++G      A  P
Sbjct: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLP 247

Query: 53  GGGAALLAGRLRPRRRWAPGAGPVAACRPR------AAAAGGPTDGKGRGSCQR 100
             G A       P  R     G  A  RPR      A  +G  T G  RG C R
Sbjct: 248 LPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDR 301


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.140    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,087,826
Number of Sequences: 37866
Number of extensions: 663707
Number of successful extensions: 4177
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 375
Number of HSP's that attempted gapping in prelim test: 3528
Number of HSP's gapped (non-prelim): 955
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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