Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239741844
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo
sapiens]
(331 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753382 PREDICTED: hypothetical protein [Homo sapiens] 689 0.0
gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo ... 689 0.0
gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo ... 689 0.0
gi|153070260 myristoylated alanine-rich protein kinase C substra... 47 2e-05
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 43 4e-04
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 41 0.001
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 39 0.005
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 39 0.005
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 39 0.005
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 39 0.005
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 39 0.005
gi|239508698 PREDICTED: similar to mucin [Homo sapiens] 39 0.006
gi|5032223 plexin C1 [Homo sapiens] 38 0.011
gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo s... 38 0.011
gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo s... 38 0.011
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 38 0.014
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 38 0.014
gi|23821044 zinc finger/RING finger 2 [Homo sapiens] 37 0.019
gi|228008351 coiled-coil domain containing 48 [Homo sapiens] 37 0.032
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 37 0.032
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 37 0.032
gi|4758156 diacylglycerol kinase, iota [Homo sapiens] 37 0.032
gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens] 36 0.054
gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens] 36 0.054
gi|238550206 Z-DNA binding protein 1 isoform a [Homo sapiens] 36 0.054
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens] 36 0.054
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 36 0.054
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 36 0.054
gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo ... 36 0.054
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 36 0.054
>gi|239753382 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 689 bits (1777), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL 60
MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL
Sbjct: 1 MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL 60
Query: 61 FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL 120
FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL
Sbjct: 61 FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL 120
Query: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180
RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE
Sbjct: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180
Query: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA 240
GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA
Sbjct: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA 240
Query: 241 SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE 300
SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE
Sbjct: 241 SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE 300
Query: 301 PACRGPRSLAAAFPAKGSALGPGRAARPALT 331
PACRGPRSLAAAFPAKGSALGPGRAARPALT
Sbjct: 301 PACRGPRSLAAAFPAKGSALGPGRAARPALT 331
>gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo
sapiens]
Length = 331
Score = 689 bits (1777), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL 60
MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL
Sbjct: 1 MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL 60
Query: 61 FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL 120
FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL
Sbjct: 61 FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL 120
Query: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180
RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE
Sbjct: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180
Query: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA 240
GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA
Sbjct: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA 240
Query: 241 SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE 300
SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE
Sbjct: 241 SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE 300
Query: 301 PACRGPRSLAAAFPAKGSALGPGRAARPALT 331
PACRGPRSLAAAFPAKGSALGPGRAARPALT
Sbjct: 301 PACRGPRSLAAAFPAKGSALGPGRAARPALT 331
>gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo
sapiens]
Length = 331
Score = 689 bits (1777), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL 60
MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL
Sbjct: 1 MGKFALISCSPCYEELFVEEAVAKTTSRPSLENNEICPCDVDQCFPSPGHFSNQCSLSPL 60
Query: 61 FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL 120
FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL
Sbjct: 61 FTCNVHLHNTLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQL 120
Query: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180
RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE
Sbjct: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180
Query: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA 240
GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA
Sbjct: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEA 240
Query: 241 SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE 300
SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE
Sbjct: 241 SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE 300
Query: 301 PACRGPRSLAAAFPAKGSALGPGRAARPALT 331
PACRGPRSLAAAFPAKGSALGPGRAARPALT
Sbjct: 301 PACRGPRSLAAAFPAKGSALGPGRAARPALT 331
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 47.4 bits (111), Expect = 2e-05
Identities = 73/264 (27%), Positives = 96/264 (36%), Gaps = 53/264 (20%)
Query: 73 GSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQSSCQ 132
G+ +P A +G P AA A G SP E P G A G G +S
Sbjct: 78 GAASPSAA--EKGEPAAAAAPEAGASPVEKEAPAEGEAA--EPGSPTAAEGEAASAASST 133
Query: 133 GS-----GAAFSPAPGSAKWQHVE---------DGASFDGRPRALGSRARPLGATHELRV 178
S GA SP+ + K + G SF + G G E
Sbjct: 134 SSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGE-----GGEAEAPA 188
Query: 179 AEGCLDTSSG----AGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAG--AAAGTDPQRS 232
AEG D ++G A +EAGA E P +AAAG AAG DPQ +
Sbjct: 189 AEGGKDEAAGGAAAAAAEAGAASGEQAAAP-----------GEEAAAGEEGAAGGDPQEA 237
Query: 233 MKAEASEASQR---SMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGP- 288
EA+ A ++ S + +A+E P + + AA + S AGP
Sbjct: 238 KPQEAAVAPEKPPASDETKAAE---------EPSKVEEKKAEEAGASAAACEAPSAAGPG 288
Query: 289 ALGQQVLGRGTEPACRGPRSLAAA 312
A +Q EPA S AA
Sbjct: 289 APPEQEAAPAEEPAAAAASSACAA 312
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 42.7 bits (99), Expect = 4e-04
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 119 QLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRA----------R 168
Q RP GG + Q G+ +SP+ Q E+ A+ P + G R +
Sbjct: 270 QRRPAGG----TGQRRGSGYSPSADQQGAQDREEEAAAAPAPTSSGHRTEKRKRLQLQCQ 325
Query: 169 PLGATHELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTD 228
P G T + R GC +++ G++ A P GHR + Q AAGT
Sbjct: 326 PAGGTGQRR-GSGCSSSANQQGAQDREEEAAAAPVPTSSGHRTEKRKPQQPQRRPAAGTG 384
Query: 229 PQRSMKAEASEASQRSMKVRASEAFRW 255
+R + S QR+ R E +W
Sbjct: 385 QRRGSGSSPSADQQRAQD-REEEVRKW 410
Score = 41.6 bits (96), Expect = 0.001
Identities = 46/182 (25%), Positives = 69/182 (37%), Gaps = 11/182 (6%)
Query: 80 RPDSRGVPEAACAQARGGSPKLPEQP-CRGRGACWRLGGRQLRPGGGKVQSSCQGSGAAF 138
R + A ++ + P+QP CR G + G + P + ++ + AA
Sbjct: 191 REEEAAAAPAPTSRGHRTEKRKPQQPQCRPAGGTGQRRGSRSSPSADQQRAQDREEEAAA 250
Query: 139 SPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGA 198
+PAP S G + R R RP G T + R G ++ G++ A
Sbjct: 251 APAPTSR-------GHRTEKRKPQQPQR-RPAGGTGQRR-GSGYSPSADQQGAQDREEEA 301
Query: 199 ELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCP 258
P GHR + Q A GT QR +S A+Q+ + R EA P P
Sbjct: 302 AAAPAPTSSGHRTEKRKRLQLQCQPAGGTG-QRRGSGCSSSANQQGAQDREEEAAAAPVP 360
Query: 259 WS 260
S
Sbjct: 361 TS 362
Score = 41.2 bits (95), Expect = 0.001
Identities = 41/153 (26%), Positives = 59/153 (38%), Gaps = 16/153 (10%)
Query: 119 QLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRA----------R 168
Q +P GG + Q G+ SP+ + Q E+ A+ P + G R R
Sbjct: 111 QCQPAGG----TGQRRGSRSSPSADQQRAQDREEEAAAAPVPTSRGHRTEKRKRQQPQRR 166
Query: 169 PLGATHELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTD 228
P G T + R G ++ G++ A P GHR + Q A GT
Sbjct: 167 PAGGTGQRR-GSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQCRPAGGTG 225
Query: 229 PQRSMKAEASEASQRSMKVRASEAFRWPCPWSR 261
+R ++ S QR+ R EA P P SR
Sbjct: 226 QRRGSRSSPSADQQRAQD-REEEAAAAPAPTSR 257
Score = 30.4 bits (67), Expect = 2.3
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 204 PVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWSR 261
P GHR + Q A GT +R ++ S QR+ R EA P P SR
Sbjct: 95 PTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSPSADQQRAQD-REEEAAAAPVPTSR 151
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 41.2 bits (95), Expect = 0.001
Identities = 75/265 (28%), Positives = 97/265 (36%), Gaps = 53/265 (20%)
Query: 73 GSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQSSCQ 132
G RP+ RG A + GSP+ P P + RG ++ PG V + +
Sbjct: 1743 GEMGSARRPEKRG----AASVKTSGSPRSPAGPEKPRGT------QKTTPG---VPAVLR 1789
Query: 133 GSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSE 192
G + P+P A G P G RA P +VA CL A
Sbjct: 1790 GRTVIYVPSPAPR--------AQPKGTP---GPRATPR------KVAPPCL-----AQPA 1827
Query: 193 AGAGGAELGCQPVGLGHRPHAPRNYQAAAGAA-AGTDPQRSMKAEASEASQRSMKVRASE 251
A A G Q HRP + + T P R K +S +SQ S AS+
Sbjct: 1828 APAKVPSPGQQRSRSLHRPAKTSELATLSQPPRSATPPARLAKTPSSSSSQTSP---ASQ 1884
Query: 252 AFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGT--------EPAC 303
P P RPP T + AL GA+ +PA L +Q + + PA
Sbjct: 1885 ----PLPRKRPPV--TQAAGALPGPGASPVPKTPARTLLAKQHKTQRSPVRIPFMQRPAR 1938
Query: 304 RGPRSLAAAFPAKGSALGPGRAARP 328
RGP LA A P G G A P
Sbjct: 1939 RGPPPLARAVPEPGPRGRAGTEAGP 1963
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 39.3 bits (90), Expect = 0.005
Identities = 65/225 (28%), Positives = 84/225 (37%), Gaps = 43/225 (19%)
Query: 119 QLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRA----------R 168
Q +P GG Q +GSG+ SP+ Q E+ A+ P + G R R
Sbjct: 40 QCQPAGGTGQR--RGSGS--SPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRR 95
Query: 169 PLGATHELRVAEGCLDTSSGAGSEAGAGGAE----LGCQPVGLGHRPHAPRNYQAAAGAA 224
P G T + R + SS + + GA E P GHR + Q A
Sbjct: 96 PAGGTGQRRGSR-----SSSSADQQGAQDREEEAAAAPAPTSSGHRTEKRKPQQPQCRPA 150
Query: 225 AGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLS 284
AGT +R S QR+ R EA P P S G RT L LQ
Sbjct: 151 AGTGQRRGSGCSPSADQQRAQD-REEEATAAPVPTS--SGHRTEKRKRL-----QLQ-CQ 201
Query: 285 PAGPALGQQVLGRGTEPACRGPRSLAAAFPAKGSALGPGRAARPA 329
PAG GQ+ RG RS + PA G+ G + P+
Sbjct: 202 PAG-GTGQR----------RGSRSSPSRQPAGGTGQRRGSRSSPS 235
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 39.3 bits (90), Expect = 0.005
Identities = 62/276 (22%), Positives = 92/276 (33%), Gaps = 52/276 (18%)
Query: 82 DSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQS-SCQGSGAAFSP 140
D G P AQ + S E P R + P GKV + Q G A P
Sbjct: 211 DVEGKPSVKPAQVKASSVSTKESPAR-----------KAAPAPGKVGDVTPQVKGGALPP 259
Query: 141 APGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAEL 200
A AK E +S +G P G +++ +E L + + G G
Sbjct: 260 AK-RAKKPEEESESSEEGSE---SEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGK-- 313
Query: 201 GCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWS 260
G P P A A P+ ++ + E+S + A++A
Sbjct: 314 -------GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASG 366
Query: 261 RPP--GLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE------------------ 300
+ G + + R GAA GPA+ + G+ E
Sbjct: 367 KTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQ 426
Query: 301 --PACRGPRSLAAAFPAK-----GSALGPGRAARPA 329
P+ + P+ AA+ PAK G+A P R PA
Sbjct: 427 AKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPA 462
Score = 28.5 bits (62), Expect = 8.7
Identities = 48/211 (22%), Positives = 73/211 (34%), Gaps = 39/211 (18%)
Query: 90 ACAQARGGSPKLPEQPCRG-RGACWRLGGRQLRPGGGKVQSSCQGSGAAFSPAPGSAKWQ 148
A AQA+ SP + P R + + G P GK ++ + GS+
Sbjct: 815 AAAQAKQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSS--- 871
Query: 149 HVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGS------EAGAGGAELGC 202
E+ + + L ++ +P G TH++R A S G+ + G A+ G
Sbjct: 872 --EEESDSEEEAETL-AQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGPSAAQAGK 928
Query: 203 QPVGL---------GHRPHAPRNYQAAAGAAAGTDPQRS-----------------MKAE 236
Q G P A + Q DP RS KA
Sbjct: 929 QDDSGSSSEESDSDGEAPAAVTSAQVIKPPLIFVDPNRSPAGPAATPAQAQAASTPRKAR 988
Query: 237 ASEASQRSMKVRASEAFRWPCPWSRPPGLRT 267
ASE++ RS + + P PG+RT
Sbjct: 989 ASESTARSSSSESEDEDVIPATQCLTPGIRT 1019
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 39.3 bits (90), Expect = 0.005
Identities = 62/276 (22%), Positives = 92/276 (33%), Gaps = 52/276 (18%)
Query: 82 DSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQS-SCQGSGAAFSP 140
D G P AQ + S E P R + P GKV + Q G A P
Sbjct: 211 DVEGKPSVKPAQVKASSVSTKESPAR-----------KAAPAPGKVGDVTPQVKGGALPP 259
Query: 141 APGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAEL 200
A AK E +S +G P G +++ +E L + + G G
Sbjct: 260 AK-RAKKPEEESESSEEGSE---SEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGK-- 313
Query: 201 GCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWS 260
G P P A A P+ ++ + E+S + A++A
Sbjct: 314 -------GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASG 366
Query: 261 RPP--GLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE------------------ 300
+ G + + R GAA GPA+ + G+ E
Sbjct: 367 KTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQ 426
Query: 301 --PACRGPRSLAAAFPAK-----GSALGPGRAARPA 329
P+ + P+ AA+ PAK G+A P R PA
Sbjct: 427 AKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPA 462
Score = 28.5 bits (62), Expect = 8.7
Identities = 48/211 (22%), Positives = 73/211 (34%), Gaps = 39/211 (18%)
Query: 90 ACAQARGGSPKLPEQPCRG-RGACWRLGGRQLRPGGGKVQSSCQGSGAAFSPAPGSAKWQ 148
A AQA+ SP + P R + + G P GK ++ + GS+
Sbjct: 815 AAAQAKQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSS--- 871
Query: 149 HVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGS------EAGAGGAELGC 202
E+ + + L ++ +P G TH++R A S G+ + G A+ G
Sbjct: 872 --EEESDSEEEAETL-AQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGPSAAQAGK 928
Query: 203 QPVGL---------GHRPHAPRNYQAAAGAAAGTDPQRS-----------------MKAE 236
Q G P A + Q DP RS KA
Sbjct: 929 QDDSGSSSEESDSDGEAPAAVTSAQVIKPPLIFVDPNRSPAGPAATPAQAQAASTPRKAR 988
Query: 237 ASEASQRSMKVRASEAFRWPCPWSRPPGLRT 267
ASE++ RS + + P PG+RT
Sbjct: 989 ASESTARSSSSESEDEDVIPATQCLTPGIRT 1019
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 39.3 bits (90), Expect = 0.005
Identities = 62/276 (22%), Positives = 92/276 (33%), Gaps = 52/276 (18%)
Query: 82 DSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQS-SCQGSGAAFSP 140
D G P AQ + S E P R + P GKV + Q G A P
Sbjct: 211 DVEGKPSVKPAQVKASSVSTKESPAR-----------KAAPAPGKVGDVTPQVKGGALPP 259
Query: 141 APGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAEL 200
A AK E +S +G P G +++ +E L + + G G
Sbjct: 260 AK-RAKKPEEESESSEEGSE---SEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGK-- 313
Query: 201 GCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWS 260
G P P A A P+ ++ + E+S + A++A
Sbjct: 314 -------GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASG 366
Query: 261 RPP--GLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE------------------ 300
+ G + + R GAA GPA+ + G+ E
Sbjct: 367 KTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQ 426
Query: 301 --PACRGPRSLAAAFPAK-----GSALGPGRAARPA 329
P+ + P+ AA+ PAK G+A P R PA
Sbjct: 427 AKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPA 462
Score = 28.5 bits (62), Expect = 8.7
Identities = 48/211 (22%), Positives = 73/211 (34%), Gaps = 39/211 (18%)
Query: 90 ACAQARGGSPKLPEQPCRG-RGACWRLGGRQLRPGGGKVQSSCQGSGAAFSPAPGSAKWQ 148
A AQA+ SP + P R + + G P GK ++ + GS+
Sbjct: 815 AAAQAKQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSS--- 871
Query: 149 HVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGS------EAGAGGAELGC 202
E+ + + L ++ +P G TH++R A S G+ + G A+ G
Sbjct: 872 --EEESDSEEEAETL-AQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGPSAAQAGK 928
Query: 203 QPVGL---------GHRPHAPRNYQAAAGAAAGTDPQRS-----------------MKAE 236
Q G P A + Q DP RS KA
Sbjct: 929 QDDSGSSSEESDSDGEAPAAVTSAQVIKPPLIFVDPNRSPAGPAATPAQAQAASTPRKAR 988
Query: 237 ASEASQRSMKVRASEAFRWPCPWSRPPGLRT 267
ASE++ RS + + P PG+RT
Sbjct: 989 ASESTARSSSSESEDEDVIPATQCLTPGIRT 1019
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 39.3 bits (90), Expect = 0.005
Identities = 62/276 (22%), Positives = 92/276 (33%), Gaps = 52/276 (18%)
Query: 82 DSRGVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPGGGKVQS-SCQGSGAAFSP 140
D G P AQ + S E P R + P GKV + Q G A P
Sbjct: 211 DVEGKPSVKPAQVKASSVSTKESPAR-----------KAAPAPGKVGDVTPQVKGGALPP 259
Query: 141 APGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAEL 200
A AK E +S +G P G +++ +E L + + G G
Sbjct: 260 AK-RAKKPEEESESSEEGSE---SEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGK-- 313
Query: 201 GCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWS 260
G P P A A P+ ++ + E+S + A++A
Sbjct: 314 -------GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASG 366
Query: 261 RPP--GLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTE------------------ 300
+ G + + R GAA GPA+ + G+ E
Sbjct: 367 KTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQ 426
Query: 301 --PACRGPRSLAAAFPAK-----GSALGPGRAARPA 329
P+ + P+ AA+ PAK G+A P R PA
Sbjct: 427 AKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPA 462
>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
Length = 265
Score = 38.9 bits (89), Expect = 0.006
Identities = 44/154 (28%), Positives = 58/154 (37%), Gaps = 20/154 (12%)
Query: 119 QLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRA----------R 168
Q RP GG Q +GSG+ SP+ Q E+ A+ P + G R R
Sbjct: 111 QCRPAGGTGQR--RGSGS--SPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRR 166
Query: 169 PLGATHELRVAEGC--LDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAG 226
P T + R + D E A A + P GHR + Q AAG
Sbjct: 167 PAAGTGQRRGSRSSPSADQQGAQDREEEAAAAPV---PTSRGHRTEKRKRQQPQCRPAAG 223
Query: 227 TDPQRSMKAEASEASQRSMKVRASEAFRWPCPWS 260
T +R ++ S QR+ R EA P P S
Sbjct: 224 TGQRRGSRSSPSADQQRAQD-REEEAAAAPAPTS 256
Score = 28.5 bits (62), Expect = 8.7
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 204 PVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWSR 261
P GHR + Q A GT QR + A Q+ + R EA P P SR
Sbjct: 95 PTSSGHRTEKRKPQQPQCRPAGGTG-QRRGSGSSPSADQQGAQDREEEAAAAPAPTSR 151
>gi|5032223 plexin C1 [Homo sapiens]
Length = 1568
Score = 38.1 bits (87), Expect = 0.011
Identities = 68/258 (26%), Positives = 90/258 (34%), Gaps = 40/258 (15%)
Query: 70 TLPGSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRG----RGAC-----WRLGGRQL 120
T P S AP ARP R G+ L G RGAC L L
Sbjct: 88 TEPVSLAPPARPRPGSSFSKLLLPYREGAAGLGGLLLTGWTFDRGACEVRPLGNLSRNSL 147
Query: 121 RPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAE 180
R G V QGS A G ++ A++ SR P + H+ +A
Sbjct: 148 RNGTEVVSCHPQGSTAGVVYRAGRNNRWYLAVAATYVLPEPETASRCNPAASDHDTAIA- 206
Query: 181 GCLDTSSGAGSEAGAGGAELGCQPVGLGHR------------PHAPRNYQAAAGAAAGTD 228
DT + + G +L C+ G H P+ P NY +GAA G
Sbjct: 207 -LKDTEGRSLATQELGRLKL-CEGAGSLHFVDAFLWNGSIYFPYYPYNY--TSGAATGW- 261
Query: 229 PQRSMKAEASEA---SQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSP 285
P + A+++E Q S+ C P G R LLSS+LV G+
Sbjct: 262 PSMARIAQSTEVLFQGQASLD----------CGHGHPDGRRLLLSSSLVEALDVWAGVFS 311
Query: 286 AGPALGQQVLGRGTEPAC 303
A GQ+ T C
Sbjct: 312 AAAGEGQERRSPTTTALC 329
>gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo
sapiens]
Length = 920
Score = 38.1 bits (87), Expect = 0.011
Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 10/196 (5%)
Query: 124 GGKVQSSCQGS--GAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEG 181
G QS G+ G A SP+ GS+ V G+S P+ LG +A G ++ V +G
Sbjct: 49 GNATQSQVLGNPMGPAGSPS-GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQG 107
Query: 182 CLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPR---NYQAAAGAAAGTDPQRSMKAEAS 238
G+ G G P GLG HA R ++ AA AAA + A A+
Sbjct: 108 VYSRGGYPGAPGFTTGYAGG--PGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATAT 165
Query: 239 EASQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRG 298
+ ++ E ++ + L RG + G++P G +G + G
Sbjct: 166 ATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTG--IGGVMGPSG 223
Query: 299 TEPACRGPRSLAAAFP 314
P P A P
Sbjct: 224 LSPLAMNPTRAAGMTP 239
>gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo
sapiens]
Length = 894
Score = 38.1 bits (87), Expect = 0.011
Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 10/196 (5%)
Query: 124 GGKVQSSCQGS--GAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEG 181
G QS G+ G A SP+ GS+ V G+S P+ LG +A G ++ V +G
Sbjct: 49 GNATQSQVLGNPMGPAGSPS-GSSMMPGVAGGSSALTSPQCLGQQAFAEGGANKGYVQQG 107
Query: 182 CLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPR---NYQAAAGAAAGTDPQRSMKAEAS 238
G+ G G P GLG HA R ++ AA AAA + A A+
Sbjct: 108 VYSRGGYPGAPGFTTGYAGG--PGGLGLPSHAARPSTDFTQAAAAAAVAAAAATATATAT 165
Query: 239 EASQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRG 298
+ ++ E ++ + L RG + G++P G +G + G
Sbjct: 166 ATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTG--IGGVMGPSG 223
Query: 299 TEPACRGPRSLAAAFP 314
P P A P
Sbjct: 224 LSPLAMNPTRAAGMTP 239
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.7 bits (86), Expect = 0.014
Identities = 74/271 (27%), Positives = 91/271 (33%), Gaps = 31/271 (11%)
Query: 73 GSCAPMARPDSRGVPEAACAQARGGSPKLPEQPCRGR-GACWRLGGRQLR--PGGGKVQS 129
G P P +G+P A G P EQ G GA G R R PG VQ
Sbjct: 632 GEQGPAGSPGFQGLPGPAGPPGEAGKPG--EQGVPGDLGAPGPSGARGERGFPGERGVQG 689
Query: 130 SCQGSGA-AFSPAPGSAKWQHVEDGASFD-GRPRALGSRARP-LGATHELRVAEGCLDTS 186
+G + APG+ DGA D G P A GS+ P L R A G L
Sbjct: 690 PPGPAGPRGANGAPGN-------DGAKGDAGAPGAPGSQGAPGLQGMPGERGAAG-LPGP 741
Query: 187 SGAGSEAGAGGAELG---------CQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEA 237
G +AG GA+ P+G P P G + + P A
Sbjct: 742 KGDRGDAGPKGADGSPGKDGVRGLTGPIG----PPGPAGAPGDKGESGPSGPAGPTGARG 797
Query: 238 SEASQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGR 297
+ + F P PG + A +G A G PAGPA +G
Sbjct: 798 APGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPG--PAGPAGPPGPIGN 855
Query: 298 GTEPACRGPRSLAAAFPAKGSALGPGRAARP 328
P +G R A A G GR P
Sbjct: 856 VGAPGAKGARGSAGPPGATGFPGAAGRVGPP 886
Score = 35.8 bits (81), Expect = 0.054
Identities = 72/271 (26%), Positives = 87/271 (32%), Gaps = 41/271 (15%)
Query: 69 NTLPGSCAPMARPDSRGVPEA-ACAQARG-------GSPKLPEQPCRGRGACWRLGGR-Q 119
N PG P P RG P A A ARG P P P G +G + +
Sbjct: 295 NGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGE 354
Query: 120 LRPGGGKVQSSCQG-SGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRV 178
P G + QG G P P A GA DG+P A G+ P +
Sbjct: 355 AGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGA--DGQPGAKGANGAP-----GIAG 407
Query: 179 AEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNY-QAAAGAAAGTDPQRSMKAEA 237
A G + G G GG P G P AP + A G + A
Sbjct: 408 APG-FPGARGPSGPQGPGGPP---GPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463
Query: 238 SEASQRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGR 297
E +R + P PPG R S G + G P GPA G
Sbjct: 464 GEEGKRGARGEPG-----PTGLPGPPGERGGPGSRGFPGADGVAG--PKGPA------GE 510
Query: 298 GTEPACRGPRSLAAAFPAKGSALGPGRAARP 328
P GP+ + G A PG A P
Sbjct: 511 RGSPGPAGPKG------SPGEAGRPGEAGLP 535
Score = 31.2 bits (69), Expect = 1.3
Identities = 74/264 (28%), Positives = 85/264 (32%), Gaps = 41/264 (15%)
Query: 73 GSCAPMARPDSRGVPEAACAQARGGSPKLPEQP-CRGRGACWRLGGRQLRPGGGKVQSSC 131
GS P G P A A G+P QP +G + G PG + S
Sbjct: 362 GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGA-RGPSGP 420
Query: 132 QGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGS 191
QG G P S G P A GS+ GA E + G
Sbjct: 421 QGPGGPPGPKGNS-------------GEPGAPGSKG-DTGAKGEPGPVG--VQGPPGPAG 464
Query: 192 EAGAGGAELGCQPVGLGHRPH-----APRNYQAAAGAAAGTDP--QRSMKAEASEASQRS 244
E G GA P GL P R + A G A P +R A
Sbjct: 465 EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG 524
Query: 245 MKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTEPACR 304
R EA PG + L S G G P GPA GQ GR P
Sbjct: 525 EAGRPGEAGL--------PGAKGLTGSPGSPGPDGKTG--PPGPA-GQD--GRPGPPGPP 571
Query: 305 GPRSLAAA--FPA-KGSALGPGRA 325
G R A FP KG+A PG+A
Sbjct: 572 GARGQAGVMGFPGPKGAAGEPGKA 595
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 37.7 bits (86), Expect = 0.014
Identities = 71/251 (28%), Positives = 86/251 (34%), Gaps = 57/251 (22%)
Query: 85 GVPEAACAQARGGSPKLPEQPCRGRGACWRLGGRQLRPG-GGKVQSSCQGSGAAFSPAPG 143
G P GSP +Q R +C R PG GGK Q G+G SP P
Sbjct: 56 GAPGTQRGVREVGSPTR-DQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPC 114
Query: 144 SAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGG----AE 199
+ P+AL S P A R+ G SSGA GG A
Sbjct: 115 A---------------PQALASLLGPGKAGCRARLQGG----SSGASPRRLPGGRGPAAA 155
Query: 200 LGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPW 259
+P G G R PRN A + +GT P AS + ++V P+
Sbjct: 156 FAVEP-GTGQR---PRNTSLAQASRSGTVP------GLPPASLQPLRV----------PY 195
Query: 260 SRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTEPACRGPRSLAAAFPAKGSA 319
PPG S RG L P L + P CR LA P +
Sbjct: 196 FAPPGPHDPTS----RGPGRLLTREPPSRKLPPPL------PLCRSRWVLAP--PPPPAP 243
Query: 320 LGPGRAARPAL 330
GP AA P L
Sbjct: 244 PGPNAAAHPPL 254
>gi|23821044 zinc finger/RING finger 2 [Homo sapiens]
Length = 242
Score = 37.4 bits (85), Expect = 0.019
Identities = 41/141 (29%), Positives = 51/141 (36%), Gaps = 4/141 (2%)
Query: 153 GASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPH 212
GA G P A R R + + G + ++G G A A A V H+P
Sbjct: 2 GAKQSG-PAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS 60
Query: 213 APRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWPCPWSRPPGLRTLLSSA 272
A AAA A A RS + S S A F P S P G + + S+
Sbjct: 61 ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS 120
Query: 273 LVRGGAALQ---GLSPAGPAL 290
GG G SP GP L
Sbjct: 121 PEDGGGGRDRPVGGSPGGPRL 141
>gi|228008351 coiled-coil domain containing 48 [Homo sapiens]
Length = 598
Score = 36.6 bits (83), Expect = 0.032
Identities = 45/172 (26%), Positives = 54/172 (31%), Gaps = 10/172 (5%)
Query: 84 RGVPEAACAQARGGSPKLPEQ----PCRGRGACWRLGGRQL------RPGGGKVQSSCQG 133
RGV A G L E CRG G R R L R G G
Sbjct: 42 RGVENEIVVLATGLDQYLQEVFHHLDCRGAGRLPRADFRALCAVLGLRAEGATTAGQAAG 101
Query: 134 SGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEA 193
G + PG A + DG S L RA P T A C + AG
Sbjct: 102 DGNSRDVTPGDAAAELATDGDSDTDEEARLALRAEPPELTFRQFHARLCGYFGTRAGPRL 161
Query: 194 GAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSM 245
G + RP R A G +G D +R + E +S R +
Sbjct: 162 PRGALSEHIETQIRLRRPRRRRRPPCAPGPDSGPDCERVARLEEENSSLREL 213
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 36.6 bits (83), Expect = 0.032
Identities = 65/266 (24%), Positives = 90/266 (33%), Gaps = 55/266 (20%)
Query: 97 GSPKLPEQPCRGRGACWRLGGRQ----------LRPGGGKVQSSCQGSGAAF----SPAP 142
GS P G G R G R+ LR G + CQG G+++ +P P
Sbjct: 158 GSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSR---RCQGLGSSWGGSGTPPP 214
Query: 143 GSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAELGC 202
A W A + R RA P V GC+ T + G GG +
Sbjct: 215 PRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRA-----RGHGGVQ--- 266
Query: 203 QPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWP-----C 257
R AP ++ + G G R + S+A++ S A A P
Sbjct: 267 -----RQRFSAPSSHSTSGGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAA 321
Query: 258 PWSRPPGLR--TLLSSAL-----------VRGGAALQGLSPAGPALGQQVLGRG-TEPAC 303
W G R T+L A+ R G AL+ PA G ++ R
Sbjct: 322 QWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALE------PAQGSELWARAERHGGS 375
Query: 304 RGPRSLAAAFPAKGSALGPGRAARPA 329
G R+L A+ P +A PA
Sbjct: 376 SGARTLPTPSRARPGKPAPRGSAPPA 401
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 36.6 bits (83), Expect = 0.032
Identities = 65/266 (24%), Positives = 90/266 (33%), Gaps = 55/266 (20%)
Query: 97 GSPKLPEQPCRGRGACWRLGGRQ----------LRPGGGKVQSSCQGSGAAF----SPAP 142
GS P G G R G R+ LR G + CQG G+++ +P P
Sbjct: 158 GSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSR---RCQGLGSSWGGSGTPPP 214
Query: 143 GSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAELGC 202
A W A + R RA P V GC+ T + G GG +
Sbjct: 215 PRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRA-----RGHGGVQ--- 266
Query: 203 QPVGLGHRPHAPRNYQAAAGAAAGTDPQRSMKAEASEASQRSMKVRASEAFRWP-----C 257
R AP ++ + G G R + S+A++ S A A P
Sbjct: 267 -----RQRFSAPSSHSTSGGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAA 321
Query: 258 PWSRPPGLR--TLLSSAL-----------VRGGAALQGLSPAGPALGQQVLGRG-TEPAC 303
W G R T+L A+ R G AL+ PA G ++ R
Sbjct: 322 QWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALE------PAQGSELWARAERHGGS 375
Query: 304 RGPRSLAAAFPAKGSALGPGRAARPA 329
G R+L A+ P +A PA
Sbjct: 376 SGARTLPTPSRARPGKPAPRGSAPPA 401
>gi|4758156 diacylglycerol kinase, iota [Homo sapiens]
Length = 1065
Score = 36.6 bits (83), Expect = 0.032
Identities = 52/180 (28%), Positives = 70/180 (38%), Gaps = 37/180 (20%)
Query: 125 GKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPRALGSRARPLGATHELRVAEGCLD 184
G ++ + AA SP PG GA+ A P + E + A G
Sbjct: 18 GPARAPAAAAAAAASP-PGPCS------GAACAPSAAAGAGAMNPSSSAGEEKGATGG-S 69
Query: 185 TSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAGAAAGTDPQ---RSMKAEASEAS 241
+SSG+G+ + GAE G P G G AAAGAAA +P + K EA E
Sbjct: 70 SSSGSGAGSCCLGAEGGADPRGAGS--------AAAAGAAALDEPAAAGQKEKDEALEEK 121
Query: 242 QRSMKVRASEAFRWPCPWSRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTEP 301
R++ R ++R A+ R G LQ L+PA P G EP
Sbjct: 122 LRNLTFRKQVSYR----------------KAISRAG--LQHLAPAHPLSLPVANGPAKEP 163
>gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens]
Length = 354
Score = 35.8 bits (81), Expect = 0.054
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 116 GGRQLRPGGGKVQSSCQGSGAAFS---PAPGSAKWQHVEDGASFDGRPRALGSRARPLGA 172
G + PG V ++ G A+F P+PG+ H E A+ ++ +G
Sbjct: 206 GPAHIPPGSPPVSATAAGPEASFEARIPSPGT----HPEGEAAQRIHMKSCFLEDATIGN 261
Query: 173 THELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRN 216
++++ ++ G AGS G G + G +P R H PR+
Sbjct: 262 SNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRD 305
>gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens]
Length = 428
Score = 35.8 bits (81), Expect = 0.054
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 116 GGRQLRPGGGKVQSSCQGSGAAFS---PAPGSAKWQHVEDGASFDGRPRALGSRARPLGA 172
G + PG V ++ G A+F P+PG+ H E A+ ++ +G
Sbjct: 280 GPAHIPPGSPPVSATAAGPEASFEARIPSPGT----HPEGEAAQRIHMKSCFLEDATIGN 335
Query: 173 THELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRN 216
++++ ++ G AGS G G + G +P R H PR+
Sbjct: 336 SNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRD 379
>gi|238550206 Z-DNA binding protein 1 isoform a [Homo sapiens]
Length = 429
Score = 35.8 bits (81), Expect = 0.054
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 116 GGRQLRPGGGKVQSSCQGSGAAFS---PAPGSAKWQHVEDGASFDGRPRALGSRARPLGA 172
G + PG V ++ G A+F P+PG+ H E A+ ++ +G
Sbjct: 281 GPAHIPPGSPPVSATAAGPEASFEARIPSPGT----HPEGEAAQRIHMKSCFLEDATIGN 336
Query: 173 THELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRN 216
++++ ++ G AGS G G + G +P R H PR+
Sbjct: 337 SNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRD 380
>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 35.8 bits (81), Expect = 0.054
Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 16/125 (12%)
Query: 183 LDTSSGAGSEAGAG-GAELGCQPVGLGHRPH-APRNYQAAAGAAAGTDPQRSMKAEASEA 240
+ + G G EA AG GA+ Q VG G R H AP + A GA A P +
Sbjct: 155 IHAARGRGVEAAAGAGAQRAAQAVGAGGRSHVAPAGARPARGARAAEHPAVGGRGHGPGG 214
Query: 241 SQRSMKVRASEAFRWP--CPW-SRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGR 297
+RWP W PG + V GG+A L+ GP + GR
Sbjct: 215 -------HGCGGWRWPGRRRWRGLAPGEEANEGAVGVGGGSAAASLA-RGP---RSESGR 263
Query: 298 GTEPA 302
G +PA
Sbjct: 264 GLDPA 268
>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 35.8 bits (81), Expect = 0.054
Identities = 72/270 (26%), Positives = 94/270 (34%), Gaps = 67/270 (24%)
Query: 51 FSNQCSLSPLFTCNVHLHNTLPGSCAPMARPDSRGV----PEAACAQARGGSPKLPEQPC 106
FS+ C SPL+ C + +P + S GV PEAA R L P
Sbjct: 266 FSSTCRFSPLWVC-----PAAAPARSPARQQGSPGVLRVPPEAAPPLPRPRPHLLTRCPP 320
Query: 107 RGRGACWRLGGRQLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPR----A 162
R GR+LR + A P G+ G+SF GRP A
Sbjct: 321 RAPRLRRLEAGRRLR-----------RTAAPLGPVAGA--------GSSFGGRPHRPSLA 361
Query: 163 LGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAG 222
LGS R A H L L ++ G EA H+ Q A
Sbjct: 362 LGSDRRSPEAPHYL------LWAAAVRGQEA------------------HSLWPLQPRAR 397
Query: 223 AAAGTDPQRSMKAEASEASQRSMKVRASEAFRW-PCPWSRPPGLRTLLSSALVRGGAA-- 279
G+D R ++ + A+ A R P PP R + ++A GGA
Sbjct: 398 RQGGSDRHR----RRGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLGGAGPR 453
Query: 280 LQGLSPAGPALGQQVLGRGTEPACRGPRSL 309
L+G A P G+ RG C G R L
Sbjct: 454 LEGRGGAAPPAGK----RGLLIGCEGDRRL 479
>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 591
Score = 35.8 bits (81), Expect = 0.054
Identities = 72/270 (26%), Positives = 94/270 (34%), Gaps = 67/270 (24%)
Query: 51 FSNQCSLSPLFTCNVHLHNTLPGSCAPMARPDSRGV----PEAACAQARGGSPKLPEQPC 106
FS+ C SPL+ C + +P + S GV PEAA R L P
Sbjct: 356 FSSTCRFSPLWVC-----PAAAPARSPARQQGSPGVLRVPPEAAPPLPRPRPHLLTRCPP 410
Query: 107 RGRGACWRLGGRQLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPR----A 162
R GR+LR + A P G+ G+SF GRP A
Sbjct: 411 RAPRLRRLEAGRRLR-----------RTAAPLGPVAGA--------GSSFGGRPHRPSLA 451
Query: 163 LGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAG 222
LGS R A H L L ++ G EA H+ Q A
Sbjct: 452 LGSDRRSPEAPHYL------LWAAAVRGQEA------------------HSLWPLQPRAR 487
Query: 223 AAAGTDPQRSMKAEASEASQRSMKVRASEAFRW-PCPWSRPPGLRTLLSSALVRGGAA-- 279
G+D R ++ + A+ A R P PP R + ++A GGA
Sbjct: 488 RQGGSDRHR----RRGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLGGAGPR 543
Query: 280 LQGLSPAGPALGQQVLGRGTEPACRGPRSL 309
L+G A P G+ RG C G R L
Sbjct: 544 LEGRGGAAPPAGK----RGLLIGCEGDRRL 569
>gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo
sapiens]
Length = 446
Score = 35.8 bits (81), Expect = 0.054
Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 16/125 (12%)
Query: 183 LDTSSGAGSEAGAG-GAELGCQPVGLGHRPH-APRNYQAAAGAAAGTDPQRSMKAEASEA 240
+ + G G EA AG GA+ Q VG G R H AP + A GA A P +
Sbjct: 304 IHAARGRGVEAAAGAGAQRAAQAVGAGGRSHVAPAGARPARGARAAEHPAVGGRGHGPGG 363
Query: 241 SQRSMKVRASEAFRWP--CPW-SRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGR 297
+RWP W PG + V GG+A L+ GP + GR
Sbjct: 364 -------HGCGGWRWPGRRRWRGLAPGEEANEGAVGVGGGSAAASLA-RGP---RSESGR 412
Query: 298 GTEPA 302
G +PA
Sbjct: 413 GLDPA 417
>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
sapiens]
Length = 591
Score = 35.8 bits (81), Expect = 0.054
Identities = 72/270 (26%), Positives = 94/270 (34%), Gaps = 67/270 (24%)
Query: 51 FSNQCSLSPLFTCNVHLHNTLPGSCAPMARPDSRGV----PEAACAQARGGSPKLPEQPC 106
FS+ C SPL+ C + +P + S GV PEAA R L P
Sbjct: 356 FSSTCRFSPLWVC-----PAAAPARSPARQQGSPGVLRVPPEAAPPLPRPRPHLLTRCPP 410
Query: 107 RGRGACWRLGGRQLRPGGGKVQSSCQGSGAAFSPAPGSAKWQHVEDGASFDGRPR----A 162
R GR+LR + A P G+ G+SF GRP A
Sbjct: 411 RAPRLRRLEAGRRLR-----------RTAAPLGPVAGA--------GSSFGGRPHRPSLA 451
Query: 163 LGSRARPLGATHELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRNYQAAAG 222
LGS R A H L L ++ G EA H+ Q A
Sbjct: 452 LGSDRRSPEAPHYL------LWAAAVRGQEA------------------HSLWPLQPRAR 487
Query: 223 AAAGTDPQRSMKAEASEASQRSMKVRASEAFRW-PCPWSRPPGLRTLLSSALVRGGAA-- 279
G+D R ++ + A+ A R P PP R + ++A GGA
Sbjct: 488 RQGGSDRHR----RRGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLGGAGPR 543
Query: 280 LQGLSPAGPALGQQVLGRGTEPACRGPRSL 309
L+G A P G+ RG C G R L
Sbjct: 544 LEGRGGAAPPAGK----RGLLIGCEGDRRL 569
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,179,833
Number of Sequences: 37866
Number of extensions: 957839
Number of successful extensions: 4485
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 268
Number of HSP's that attempted gapping in prelim test: 4182
Number of HSP's gapped (non-prelim): 543
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.