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Search of human proteins with 239741706
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741706 PREDICTED: hypothetical protein XP_002342278 [Homo
sapiens]
(173 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753247 PREDICTED: hypothetical protein XP_002345596 [Homo ... 361 e-100
gi|239747840 PREDICTED: hypothetical protein XP_002348327 [Homo ... 361 e-100
gi|239741706 PREDICTED: hypothetical protein XP_002342278 [Homo ... 361 e-100
gi|22748667 Na+/K+ -ATPase alpha 3 subunit [Homo sapiens] 30 1.4
gi|5032045 ribonuclease, RNase A family, k6 [Homo sapiens] 29 2.3
gi|55749621 pleckstrin homology domain containing, family G, mem... 29 2.3
gi|239752818 PREDICTED: hypothetical protein [Homo sapiens] 28 4.0
gi|239747395 PREDICTED: hypothetical protein [Homo sapiens] 28 4.0
gi|239741221 PREDICTED: hypothetical protein [Homo sapiens] 28 4.0
gi|68800350 interleukin-1 receptor-associated kinase 1 isoform 3... 28 5.2
gi|68800243 interleukin-1 receptor-associated kinase 1 isoform 1... 28 5.2
gi|4885419 zinc finger and BTB domain containing 48 [Homo sapiens] 28 5.2
gi|46391075 hypothetical protein LOC79949 [Homo sapiens] 28 5.2
gi|239752951 PREDICTED: similar to kruppel-related zinc finger p... 27 8.8
gi|239742295 PREDICTED: hypothetical protein XP_002342479 [Homo ... 27 8.8
gi|239742280 PREDICTED: hypothetical protein XP_002342473 [Homo ... 27 8.8
gi|68303635 mutS homolog 3 [Homo sapiens] 27 8.8
gi|51479173 dynein, axonemal, heavy chain 11 [Homo sapiens] 27 8.8
gi|153792150 deubiquitinating enzyme 3 [Homo sapiens] 27 8.8
>gi|239753247 PREDICTED: hypothetical protein XP_002345596 [Homo
sapiens]
Length = 173
Score = 361 bits (926), Expect = e-100
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MERTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQV 60
MERTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQV
Sbjct: 1 MERTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQV 60
Query: 61 LGDACAVIVDDVLSGQSQTQEVAVHSHSEGLLGSRHLLDDLHPVLVHQKHLDGSAFDRDD 120
LGDACAVIVDDVLSGQSQTQEVAVHSHSEGLLGSRHLLDDLHPVLVHQKHLDGSAFDRDD
Sbjct: 61 LGDACAVIVDDVLSGQSQTQEVAVHSHSEGLLGSRHLLDDLHPVLVHQKHLDGSAFDRDD 120
Query: 121 ANFYTEGVPTHRVLVQCKRGCPLDAGPRRHWLEVQHVDQADGVVTQHQQPVEC 173
ANFYTEGVPTHRVLVQCKRGCPLDAGPRRHWLEVQHVDQADGVVTQHQQPVEC
Sbjct: 121 ANFYTEGVPTHRVLVQCKRGCPLDAGPRRHWLEVQHVDQADGVVTQHQQPVEC 173
>gi|239747840 PREDICTED: hypothetical protein XP_002348327 [Homo
sapiens]
Length = 173
Score = 361 bits (926), Expect = e-100
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MERTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQV 60
MERTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQV
Sbjct: 1 MERTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQV 60
Query: 61 LGDACAVIVDDVLSGQSQTQEVAVHSHSEGLLGSRHLLDDLHPVLVHQKHLDGSAFDRDD 120
LGDACAVIVDDVLSGQSQTQEVAVHSHSEGLLGSRHLLDDLHPVLVHQKHLDGSAFDRDD
Sbjct: 61 LGDACAVIVDDVLSGQSQTQEVAVHSHSEGLLGSRHLLDDLHPVLVHQKHLDGSAFDRDD 120
Query: 121 ANFYTEGVPTHRVLVQCKRGCPLDAGPRRHWLEVQHVDQADGVVTQHQQPVEC 173
ANFYTEGVPTHRVLVQCKRGCPLDAGPRRHWLEVQHVDQADGVVTQHQQPVEC
Sbjct: 121 ANFYTEGVPTHRVLVQCKRGCPLDAGPRRHWLEVQHVDQADGVVTQHQQPVEC 173
>gi|239741706 PREDICTED: hypothetical protein XP_002342278 [Homo
sapiens]
Length = 173
Score = 361 bits (926), Expect = e-100
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MERTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQV 60
MERTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQV
Sbjct: 1 MERTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQV 60
Query: 61 LGDACAVIVDDVLSGQSQTQEVAVHSHSEGLLGSRHLLDDLHPVLVHQKHLDGSAFDRDD 120
LGDACAVIVDDVLSGQSQTQEVAVHSHSEGLLGSRHLLDDLHPVLVHQKHLDGSAFDRDD
Sbjct: 61 LGDACAVIVDDVLSGQSQTQEVAVHSHSEGLLGSRHLLDDLHPVLVHQKHLDGSAFDRDD 120
Query: 121 ANFYTEGVPTHRVLVQCKRGCPLDAGPRRHWLEVQHVDQADGVVTQHQQPVEC 173
ANFYTEGVPTHRVLVQCKRGCPLDAGPRRHWLEVQHVDQADGVVTQHQQPVEC
Sbjct: 121 ANFYTEGVPTHRVLVQCKRGCPLDAGPRRHWLEVQHVDQADGVVTQHQQPVEC 173
>gi|22748667 Na+/K+ -ATPase alpha 3 subunit [Homo sapiens]
Length = 1013
Score = 29.6 bits (65), Expect = 1.4
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 45 PLDDRRPLLTAVGKQVLGDACAVIVDDVLSGQSQT-----QEVAVHSHSE-GLLGSRHLL 98
P D+R L+ + + D C+ I+ L G+ Q +E +++ E G LG R +L
Sbjct: 488 PNDNRYLLVMKGAPERILDRCSTIL---LQGKEQPLDEEMKEAFQNAYLELGGLGER-VL 543
Query: 99 DDLHPVLVHQKHLDGSAFDRDDANFYTEGV 128
H L ++ G AFD DD NF T+ +
Sbjct: 544 GFCHYYLPEEQFPKGFAFDCDDVNFTTDNL 573
>gi|5032045 ribonuclease, RNase A family, k6 [Homo sapiens]
Length = 150
Score = 28.9 bits (63), Expect = 2.3
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 141 CPLDAGPRR----HWLEVQHV 157
CPL A P+R HW E+QH+
Sbjct: 19 CPLHAWPKRLTKAHWFEIQHI 39
>gi|55749621 pleckstrin homology domain containing, family G, member
3 [Homo sapiens]
Length = 1163
Score = 28.9 bits (63), Expect = 2.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 4 TQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSP 43
T P+S SPT R A ++ L + E S + Q EL++P
Sbjct: 807 TASPESSSPTEGRSPAHLARELKELVKELSSSTQGELVAP 846
>gi|239752818 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 28.1 bits (61), Expect = 4.0
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 3 RTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYP 45
R+ PP SH+P S R R G+ L LW + AR E LS P
Sbjct: 121 RSAPPWSHTPRSPR-RIGV-LSLWPGAPRATFARAAENLSRGP 161
>gi|239747395 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 28.1 bits (61), Expect = 4.0
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 3 RTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYP 45
R+ PP SH+P S R R G+ L LW + AR E LS P
Sbjct: 74 RSAPPWSHTPRSPR-RIGV-LSLWPGAPRATFARAAENLSRGP 114
>gi|239741221 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 28.1 bits (61), Expect = 4.0
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 3 RTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYP 45
R+ PP SH+P S R R G+ L LW + AR E LS P
Sbjct: 74 RSAPPWSHTPRSPR-RIGV-LSLWPGAPRATFARAAENLSRGP 114
>gi|68800350 interleukin-1 receptor-associated kinase 1 isoform 3
[Homo sapiens]
Length = 633
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 7 PQSHSPTSARGRAGISLRLWQTCLEPSGARQQ 38
PQ +S S+ GRA WQ PSGA Q
Sbjct: 463 PQENSYVSSTGRAHSGAAPWQPLAAPSGASAQ 494
>gi|68800243 interleukin-1 receptor-associated kinase 1 isoform 1
[Homo sapiens]
Length = 712
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 7 PQSHSPTSARGRAGISLRLWQTCLEPSGARQQ 38
PQ +S S+ GRA WQ PSGA Q
Sbjct: 542 PQENSYVSSTGRAHSGAAPWQPLAAPSGASAQ 573
>gi|4885419 zinc finger and BTB domain containing 48 [Homo sapiens]
Length = 688
Score = 27.7 bits (60), Expect = 5.2
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 5 QPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQVLGDA 64
Q PQ HSP + G + + +L ++ L P PL+D++P V + L
Sbjct: 173 QRPQLHSPAQSEGPSSLCGKL------------KQALKPCPLEDKKPEDCKVPPRPLEAE 220
Query: 65 CAVIVDDVLSGQSQTQEVAVHSHSEG 90
A L G S EV V +G
Sbjct: 221 GA-----QLQGGSNEWEVVVQVEDDG 241
>gi|46391075 hypothetical protein LOC79949 [Homo sapiens]
Length = 363
Score = 27.7 bits (60), Expect = 5.2
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 61 LGDACAVIVDDVLSGQSQTQEVAVHSHSEGLLGSRHLLDDLHPVL--VHQKHLDGSAFDR 118
LG+ + L G S T E S L +HL++ P H + L + D
Sbjct: 150 LGNKRTLFYSSPLLGPSSTSEAVGSSSPRNGLQDKHLMEQSSPGFRQTHLQDLSEATQDV 209
Query: 119 DDANFYTEGVPTHRVLVQCKRGCPLDAGPRRHWLEVQHVDQADGVVTQHQQPVE 172
+ N Y P +L D+G +E DQ G + H +P+E
Sbjct: 210 KEENHYL--TPRSVLLELDNIIASSDSGES---IETDGPDQVSGRIECHYEPME 258
>gi|239752951 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 3 [Homo sapiens]
Length = 573
Score = 26.9 bits (58), Expect = 8.8
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 6 PPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLS-PYPLDDRRPLLTAVGKQ-VLGD 63
PP + G S WQ+ E G+ + +L+ P+P D LL+ + +Q LG
Sbjct: 8 PPSPQAAAPGEAWPGPSQAPWQSLEEKMGSPEDDLIGIPFP-DHSSELLSCLNEQRQLGH 66
Query: 64 ACAVIVDDVLSGQSQTQEVAVHSHSEGLLGSRHLLDDL 101
C + + +TQ + +H L H L
Sbjct: 67 LCDLTI--------RTQGLEYRTHRAVLAACSHYFKKL 96
>gi|239742295 PREDICTED: hypothetical protein XP_002342479 [Homo
sapiens]
Length = 530
Score = 26.9 bits (58), Expect = 8.8
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 1 MERTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQV 60
++RT P+ SP S R + L ARQ PL +RRP G Q
Sbjct: 32 IQRTSLPEK-SPLSCETRVDLCDDLAPV------ARQLAPREKLPLSNRRPAAVGAGLQN 84
Query: 61 LGDACAV 67
+G+ C V
Sbjct: 85 MGNTCYV 91
>gi|239742280 PREDICTED: hypothetical protein XP_002342473 [Homo
sapiens]
Length = 530
Score = 26.9 bits (58), Expect = 8.8
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 1 MERTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQV 60
++RT P+ SP S R + L ARQ PL +RRP G Q
Sbjct: 32 IQRTSLPEK-SPLSCETRVDLCDDLAPV------ARQLAPREKLPLSNRRPAAVGAGLQN 84
Query: 61 LGDACAV 67
+G+ C V
Sbjct: 85 MGNTCYV 91
>gi|68303635 mutS homolog 3 [Homo sapiens]
Length = 1137
Score = 26.9 bits (58), Expect = 8.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 120 DANFYTEGVPTHRVLVQCKR 139
D NF T +PTHR+ V +R
Sbjct: 277 DHNFMTASIPTHRLFVHVRR 296
>gi|51479173 dynein, axonemal, heavy chain 11 [Homo sapiens]
Length = 4523
Score = 26.9 bits (58), Expect = 8.8
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 22 SLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQVLGDACAV 67
++R W C+ P R+ + + L+D+ L T K + GD C +
Sbjct: 840 TMRGWARCVLPP-RREHRREAAFTLEDKGDLFTKKYKLIQGDGCKI 884
>gi|153792150 deubiquitinating enzyme 3 [Homo sapiens]
Length = 530
Score = 26.9 bits (58), Expect = 8.8
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 1 MERTQPPQSHSPTSARGRAGISLRLWQTCLEPSGARQQELLSPYPLDDRRPLLTAVGKQV 60
++RT P+ SP S+ R + L ARQ PL RRP G Q
Sbjct: 32 IQRTSLPEK-SPLSSEARVDLCDDLAPV------ARQLAPRKKLPLSSRRPAAVGAGLQN 84
Query: 61 LGDAC 65
+G+ C
Sbjct: 85 MGNTC 89
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,851,157
Number of Sequences: 37866
Number of extensions: 359248
Number of successful extensions: 769
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 19
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.