Guide to the Human Genome
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Name: LOC100291216 Sequence: fasta or formatted (173aa) NCBI GI: 239747840
Description:

PREDICTED: hypothetical protein XP_002348327

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         11           1
 C cysteine            2.9          5           1
 D aspartate           8.1         14           2
 E glutamate           4.6          8           1
 F phenylalanine       1.2          2           1
 G glycine             7.5         13           1
 H histidine           6.4         11           1
 I isoleucine          1.2          2           1
 K lysine              1.7          3           1
 L leucine            11.6         20           2
 M methionine          0.6          1           1
 N asparagine          0.6          1           1
 P proline             6.9         12           2
 Q glutamine           9.2         16           2
 R arginine            7.5         13           2
 S serine              6.9         12           1
 T threonine           4.6          8           1
 V valine              9.8         17           2
 W tryptophan          1.2          2           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348327 
LOC100291847          1.000   PREDICTED: hypothetical protein XP_002345596 
LOC100287152          1.000   PREDICTED: hypothetical protein XP_002342278 
ATP1A3                0.015   Na+/K+ -ATPase alpha 3 subunit 
RNASE6                0.012   ribonuclease, RNase A family, k6 
PLEKHG3               0.012   pleckstrin homology domain containing, family G, mem...
LOC100131646          0.009   PREDICTED: hypothetical protein 
LOC100131646          0.009   PREDICTED: hypothetical protein 
LOC100131646          0.009   PREDICTED: hypothetical protein 
IRAK1                 0.009   interleukin-1 receptor-associated kinase 1 isoform 3...
IRAK1                 0.009   interleukin-1 receptor-associated kinase 1 isoform 1...
ZBTB48                0.009   zinc finger and BTB domain containing 48 
C10orf81              0.009   hypothetical protein LOC79949 
LOC100293130          0.006   PREDICTED: similar to kruppel-related zinc finger p...
LOC100287478          0.006   PREDICTED: hypothetical protein XP_002342479 
LOC100287205          0.006   PREDICTED: hypothetical protein XP_002342473 
MSH3                  0.006   mutS homolog 3 
DNAH11                0.006   dynein, axonemal, heavy chain 11 
DUB3                  0.006   deubiquitinating enzyme 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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