Guide to the Human Genome
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Name: LOC100287205 Sequence: fasta or formatted (530aa) NCBI GI: 239742280
Description:

PREDICTED: hypothetical protein XP_002342473

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         42           2
 C cysteine            3.2         17           1
 D aspartate           4.3         23           2
 E glutamate           6.0         32           2
 F phenylalanine       2.5         13           1
 G glycine             5.3         28           2
 H histidine           5.3         28           2
 I isoleucine          2.6         14           1
 K lysine              6.0         32           2
 L leucine            10.6         56           2
 M methionine          2.5         13           1
 N asparagine          3.4         18           1
 P proline             5.1         27           2
 Q glutamine           7.0         37           2
 R arginine            5.3         28           2
 S serine              7.5         40           2
 T threonine           5.7         30           2
 V valine              5.5         29           1
 W tryptophan          1.1          6           1
 Y tyrosine            3.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342473 
LOC100287478          0.997   PREDICTED: hypothetical protein XP_002342479 
LOC100287441          0.991   PREDICTED: hypothetical protein XP_002342478 
LOC100287404          0.991   PREDICTED: hypothetical protein XP_002342477 
LOC100287513          0.990   PREDICTED: hypothetical protein XP_002342480 
LOC100287178          0.988   PREDICTED: hypothetical protein XP_002342472 
LOC728419             0.986   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728405             0.986   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728400             0.986   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728393             0.986   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728379             0.986   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728373             0.986   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728369             0.986   PREDICTED: similar to deubiquitinating enzyme 3 [Ho...
LOC728373             0.986   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC100287364          0.986   PREDICTED: hypothetical protein XP_002342476 
LOC100287327          0.985   PREDICTED: hypothetical protein XP_002342475 
USP17L5               0.985   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
USP17                 0.981   ubiquitin specific peptidase 17 
LOC728379             0.980   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC100288520          0.979   PREDICTED: hypothetical protein XP_002342486 
LOC100287238          0.973   PREDICTED: hypothetical protein XP_002342474 
LOC100287144          0.956   PREDICTED: hypothetical protein XP_002342471 
DUB3                  0.934   deubiquitinating enzyme 3 
USP17L3               0.925   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
USP17L8               0.923   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L4               0.917   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L7               0.903   PREDICTED: Inactive ubiquitin carboxyl-terminal hydr...
USP17L7               0.900   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L7               0.900   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L8               0.659   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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