Guide to the Human Genome
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Name: LOC654254 Sequence: fasta or formatted (585aa) NCBI GI: 212549576
Description:

zinc finger protein LOC654254

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         22           1
 C cysteine            6.0         35           1
 D aspartate           1.7         10           1
 E glutamate          10.1         59           2
 F phenylalanine       5.1         30           1
 G glycine             6.8         40           2
 H histidine           6.2         36           1
 I isoleucine          5.1         30           2
 K lysine             13.3         78           2
 L leucine             5.3         31           2
 M methionine          0.3          2           1
 N asparagine          4.3         25           1
 P proline             3.1         18           1
 Q glutamine           2.9         17           2
 R arginine            4.6         27           2
 S serine              6.3         37           3
 T threonine           7.0         41           2
 V valine              2.9         17           1
 W tryptophan          1.0          6           1
 Y tyrosine            4.1         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein LOC654254 
ZNF595                0.666   zinc finger protein 595 
ZNF93                 0.626   zinc finger protein 93 
ZNF141                0.617   zinc finger protein 141 
ZNF726                0.615   PREDICTED: zinc finger protein 726 
ZNF726                0.615   PREDICTED: zinc finger protein 726 
ZNF726                0.615   PREDICTED: zinc finger protein 726 
ZNF91                 0.613   zinc finger protein 91 
ZNF66                 0.612   PREDICTED: zinc finger protein 66 
ZNF66                 0.612   PREDICTED: zinc finger protein 66 
ZNF66                 0.612   PREDICTED: zinc finger protein 66 
ZNF429                0.610   zinc finger protein 429 
ZNF85                 0.609   zinc finger protein 85 
ZNF208                0.604   zinc finger protein 208 
ZNF708                0.601   zinc finger protein 708 
ZNF728                0.600   PREDICTED: zinc finger protein 728 
ZNF99                 0.599   zinc finger protein 99 
ZNF254                0.598   zinc finger protein 254 
ZNF728                0.598   PREDICTED: zinc finger protein 728 
ZNF728                0.598   PREDICTED: zinc finger protein 728 
ZNF721                0.593   zinc finger protein 721 
ZNF681                0.593   zinc finger protein 681 
ZNF43                 0.590   zinc finger protein 43 
ZNF92                 0.589   zinc finger protein 92 isoform 2 
ZNF676                0.581   zinc finger protein 676 
ZNF493                0.578   zinc finger protein 493 isoform 3 
ZNF737                0.577   PREDICTED: zinc finger protein 737 
ZNF737                0.577   PREDICTED: zinc finger protein 737 
ZNF737                0.577   PREDICTED: zinc finger protein 737 
ZNF90                 0.569   zinc finger protein 90 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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