Guide to the Human Genome
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Search of human proteins with 239741366

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741366 PREDICTED: hypothetical protein XP_002342186 [Homo
sapiens]
         (119 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752927 PREDICTED: similar to hCG1995379 [Homo sapiens]          249   4e-67
gi|239747492 PREDICTED: hypothetical protein XP_002347548 [Homo ...   249   4e-67
gi|239741366 PREDICTED: hypothetical protein XP_002342186 [Homo ...   249   4e-67
gi|46409448 hypothetical protein LOC389649 [Homo sapiens]              32   0.11 
gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]          31   0.25 
gi|169204982 PREDICTED: hypothetical protein [Homo sapiens]            30   0.42 
gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]            30   0.42 
gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]            30   0.42 
gi|149999371 hypothetical protein LOC91056 [Homo sapiens]              28   1.2  
gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]            28   2.1  
gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo ...    28   2.1  
gi|218505706 ankyrin repeat and SOCS box-containing 14 isoform 1...    28   2.1  
gi|18390333 ankyrin repeat and SOCS box-containing 14 isoform 2 ...    28   2.1  
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi...    27   3.6  
gi|156151443 alpha-kinase 1 [Homo sapiens]                             27   4.7  
gi|156151441 alpha-kinase 1 [Homo sapiens]                             27   4.7  
gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens]      26   6.1  
gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens]     26   6.1  
gi|42516561 ubiquitin specific protease 33 isoform 3 [Homo sapiens]    26   7.9  
gi|42516567 ubiquitin specific protease 33 isoform 1 [Homo sapiens]    26   7.9  
gi|42516565 ubiquitin specific protease 33 isoform 2 [Homo sapiens]    26   7.9  
gi|148727311 hypothetical protein LOC389690 [Homo sapiens]             26   7.9  

>gi|239752927 PREDICTED: similar to hCG1995379 [Homo sapiens]
          Length = 119

 Score =  249 bits (635), Expect = 4e-67
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR 60
           MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR
Sbjct: 1   MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR 60

Query: 61  ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP 119
           ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP
Sbjct: 61  ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP 119


>gi|239747492 PREDICTED: hypothetical protein XP_002347548 [Homo
           sapiens]
          Length = 119

 Score =  249 bits (635), Expect = 4e-67
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR 60
           MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR
Sbjct: 1   MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR 60

Query: 61  ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP 119
           ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP
Sbjct: 61  ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP 119


>gi|239741366 PREDICTED: hypothetical protein XP_002342186 [Homo
           sapiens]
          Length = 119

 Score =  249 bits (635), Expect = 4e-67
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR 60
           MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR
Sbjct: 1   MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR 60

Query: 61  ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP 119
           ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP
Sbjct: 61  ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP 119


>gi|46409448 hypothetical protein LOC389649 [Homo sapiens]
          Length = 223

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 14/94 (14%)

Query: 38  PIILWPGLCPLFSSFLPL-----------LSRLRASSRKHPSVLLTTTLTLTSL---PQL 83
           P +LW  L P     L +           L+ + +S  + P+V+  +++++T     P  
Sbjct: 87  PRLLWGCLMPRAQPLLHVTAYENTGHWERLASVVSSKTQQPTVISHSSISITFSHYPPAT 146

Query: 84  YSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSR 117
               L+L   K FPV    SPLC  C    E  R
Sbjct: 147 LDSFLVLEPIKLFPVSSLRSPLCLNCGSCRESIR 180


>gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]
          Length = 2322

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 17  HYSGIST--PHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLS 57
           HY   ST  P +WP   ++ +  P +  PGL P+F++F  LL+
Sbjct: 394 HYEAFSTLAPEAWP---AMELPEPCVPEPGLPPVFANFTQLLT 433


>gi|169204982 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 42 WPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLP 81
          W   C L ++F+PLLS   + +   PS  L  TLT + LP
Sbjct: 5  WGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLP 44


>gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 42 WPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLP 81
          W   C L ++F+PLLS   + +   PS  L  TLT + LP
Sbjct: 5  WGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLP 44


>gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 42 WPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLP 81
          W   C L ++F+PLLS   + +   PS  L  TLT + LP
Sbjct: 5  WGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLP 44


>gi|149999371 hypothetical protein LOC91056 [Homo sapiens]
          Length = 821

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 21  ISTPHSWPNSPSLGVGAPIILWPGLC-----PLFSSFLPLLSRL 59
           +S P +WP  P     AP++L P LC      L    + LL+RL
Sbjct: 316 LSFPENWPLGPEGEEAAPLLLGPQLCRGLLPSLLHDPMALLARL 359


>gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 363

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 32  SLGVGAPIILWPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLPQLYSP 86
           +LGV A   + PG+CP  +S  PL +  RA+          T L L+ LPQ   P
Sbjct: 309 ALGVAAVPAVLPGICPHPASSQPLGASSRAAQ---------TFLPLSPLPQRAHP 354


>gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo
           sapiens]
          Length = 363

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 32  SLGVGAPIILWPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLPQLYSP 86
           +LGV A   + PG+CP  +S  PL +  RA+          T L L+ LPQ   P
Sbjct: 309 ALGVAAVPAVLPGICPHPASSQPLGASSRAAQ---------TFLPLSPLPQRAHP 354


>gi|218505706 ankyrin repeat and SOCS box-containing 14 isoform 1
           [Homo sapiens]
          Length = 423

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 11/16 (68%), Positives = 14/16 (87%)

Query: 46  CPLFSSFLPLLSRLRA 61
           CP+F SFLPL +RL+A
Sbjct: 389 CPVFMSFLPLPNRLKA 404


>gi|18390333 ankyrin repeat and SOCS box-containing 14 isoform 2
           [Homo sapiens]
          Length = 302

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 11/16 (68%), Positives = 14/16 (87%)

Query: 46  CPLFSSFLPLLSRLRA 61
           CP+F SFLPL +RL+A
Sbjct: 268 CPVFMSFLPLPNRLKA 283


>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 490

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 19  SGISTPHSWPNSPSLGVGAPIILWPGLCPLFS------SFLPLLSRLRASSRKHPSVLLT 72
           SG+ +P S   SP   V +P    P   PL S      S +PLLS + +     PS+L++
Sbjct: 324 SGVPSPPSDVPSPPSDVPSP----PSDVPLLSGVPSPLSDVPLLSGVPSPPSDVPSLLMS 379

Query: 73  TTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGL 112
               L S   L SP  + + S    V   LS + ++ +G+
Sbjct: 380 PHRLLMSHYSLVSPHRLDVPSLLSDVPSLLSGVPSSPSGV 419


>gi|156151443 alpha-kinase 1 [Homo sapiens]
          Length = 1244

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 1   MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIIL 41
           +GMW       W S+  Y  +  P     S SLG+ A I +
Sbjct: 207 LGMWYEAAELIWASIVGYLALPQPDKKGLSTSLGILADIFV 247


>gi|156151441 alpha-kinase 1 [Homo sapiens]
          Length = 1244

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 1   MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIIL 41
           +GMW       W S+  Y  +  P     S SLG+ A I +
Sbjct: 207 LGMWYEAAELIWASIVGYLALPQPDKKGLSTSLGILADIFV 247


>gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens]
          Length = 706

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 38  PIILWPGLCP-----LFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLPQLYSPLLILLG 92
           P++L  GL       L+S FL   S+L    R   S+      +++SLP+     L  LG
Sbjct: 586 PLVLLLGLAISSVPLLYSIFLIPPSKLCGPFRGQSSIWAQIPESISSLPETTQNFLFFLG 645

Query: 93  SKFFPV-LQTLSPLCAACT 110
           ++ F V L  +S +  A T
Sbjct: 646 TQAFAVPLLLISSILMAYT 664


>gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens]
          Length = 712

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 38  PIILWPGLCP-----LFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLPQLYSPLLILLG 92
           P++L  GL       L+S FL   S+L    R   S+      +++SLP+     L  LG
Sbjct: 592 PLVLLLGLAISSVPLLYSIFLIPPSKLCGPFRGQSSIWAQIPESISSLPETTQNFLFFLG 651

Query: 93  SKFFPV-LQTLSPLCAACT 110
           ++ F V L  +S +  A T
Sbjct: 652 TQAFAVPLLLISSILMAYT 670


>gi|42516561 ubiquitin specific protease 33 isoform 3 [Homo sapiens]
          Length = 828

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 17  HYSGISTPHSWPNS----PSLGVGAPII--LWPGLCPLFSSFLPLLSRLRASSRKHPSVL 70
           H + +STP   P++    P L    P    LWPGL P          + +   +K+ SV+
Sbjct: 416 HSNDLSTPQILPSNEGVNPRLSASPPKSGNLWPGLAPPHKKAQSASPKRKKQHKKYRSVI 475


>gi|42516567 ubiquitin specific protease 33 isoform 1 [Homo sapiens]
          Length = 942

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 17  HYSGISTPHSWPNS----PSLGVGAPII--LWPGLCPLFSSFLPLLSRLRASSRKHPSVL 70
           H + +STP   P++    P L    P    LWPGL P          + +   +K+ SV+
Sbjct: 416 HSNDLSTPQILPSNEGVNPRLSASPPKSGNLWPGLAPPHKKAQSASPKRKKQHKKYRSVI 475


>gi|42516565 ubiquitin specific protease 33 isoform 2 [Homo sapiens]
          Length = 911

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 17  HYSGISTPHSWPNS----PSLGVGAPII--LWPGLCPLFSSFLPLLSRLRASSRKHPSVL 70
           H + +STP   P++    P L    P    LWPGL P          + +   +K+ SV+
Sbjct: 385 HSNDLSTPQILPSNEGVNPRLSASPPKSGNLWPGLAPPHKKAQSASPKRKKQHKKYRSVI 444


>gi|148727311 hypothetical protein LOC389690 [Homo sapiens]
          Length = 1318

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 64   RKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFF--PVLQTLSPLCAACTGLSEGSRKP 119
            R+ P+VL     +L S  +    + IL+ +KF   PVL  + P  AA T L++G   P
Sbjct: 996  RQIPAVLRQLLPSLQSPQERERKVAILILTKFLYSPVLLEVLPKQAALTVLAQGLHDP 1053


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,033,159
Number of Sequences: 37866
Number of extensions: 219735
Number of successful extensions: 603
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 22
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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