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Search of human proteins with 239741366
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741366 PREDICTED: hypothetical protein XP_002342186 [Homo
sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752927 PREDICTED: similar to hCG1995379 [Homo sapiens] 249 4e-67
gi|239747492 PREDICTED: hypothetical protein XP_002347548 [Homo ... 249 4e-67
gi|239741366 PREDICTED: hypothetical protein XP_002342186 [Homo ... 249 4e-67
gi|46409448 hypothetical protein LOC389649 [Homo sapiens] 32 0.11
gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens] 31 0.25
gi|169204982 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|169205503 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|169204452 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|149999371 hypothetical protein LOC91056 [Homo sapiens] 28 1.2
gi|239750217 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo ... 28 2.1
gi|218505706 ankyrin repeat and SOCS box-containing 14 isoform 1... 28 2.1
gi|18390333 ankyrin repeat and SOCS box-containing 14 isoform 2 ... 28 2.1
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 27 3.6
gi|156151443 alpha-kinase 1 [Homo sapiens] 27 4.7
gi|156151441 alpha-kinase 1 [Homo sapiens] 27 4.7
gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens] 26 6.1
gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens] 26 6.1
gi|42516561 ubiquitin specific protease 33 isoform 3 [Homo sapiens] 26 7.9
gi|42516567 ubiquitin specific protease 33 isoform 1 [Homo sapiens] 26 7.9
gi|42516565 ubiquitin specific protease 33 isoform 2 [Homo sapiens] 26 7.9
gi|148727311 hypothetical protein LOC389690 [Homo sapiens] 26 7.9
>gi|239752927 PREDICTED: similar to hCG1995379 [Homo sapiens]
Length = 119
Score = 249 bits (635), Expect = 4e-67
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR 60
MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR
Sbjct: 1 MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR 60
Query: 61 ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP 119
ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP
Sbjct: 61 ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP 119
>gi|239747492 PREDICTED: hypothetical protein XP_002347548 [Homo
sapiens]
Length = 119
Score = 249 bits (635), Expect = 4e-67
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR 60
MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR
Sbjct: 1 MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR 60
Query: 61 ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP 119
ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP
Sbjct: 61 ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP 119
>gi|239741366 PREDICTED: hypothetical protein XP_002342186 [Homo
sapiens]
Length = 119
Score = 249 bits (635), Expect = 4e-67
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR 60
MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR
Sbjct: 1 MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLSRLR 60
Query: 61 ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP 119
ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP
Sbjct: 61 ASSRKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSRKP 119
>gi|46409448 hypothetical protein LOC389649 [Homo sapiens]
Length = 223
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 38 PIILWPGLCPLFSSFLPL-----------LSRLRASSRKHPSVLLTTTLTLTSL---PQL 83
P +LW L P L + L+ + +S + P+V+ +++++T P
Sbjct: 87 PRLLWGCLMPRAQPLLHVTAYENTGHWERLASVVSSKTQQPTVISHSSISITFSHYPPAT 146
Query: 84 YSPLLILLGSKFFPVLQTLSPLCAACTGLSEGSR 117
L+L K FPV SPLC C E R
Sbjct: 147 LDSFLVLEPIKLFPVSSLRSPLCLNCGSCRESIR 180
>gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]
Length = 2322
Score = 30.8 bits (68), Expect = 0.25
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 17 HYSGIST--PHSWPNSPSLGVGAPIILWPGLCPLFSSFLPLLS 57
HY ST P +WP ++ + P + PGL P+F++F LL+
Sbjct: 394 HYEAFSTLAPEAWP---AMELPEPCVPEPGLPPVFANFTQLLT 433
>gi|169204982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 30.0 bits (66), Expect = 0.42
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 42 WPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLP 81
W C L ++F+PLLS + + PS L TLT + LP
Sbjct: 5 WGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLP 44
>gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 30.0 bits (66), Expect = 0.42
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 42 WPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLP 81
W C L ++F+PLLS + + PS L TLT + LP
Sbjct: 5 WGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLP 44
>gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 30.0 bits (66), Expect = 0.42
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 42 WPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLP 81
W C L ++F+PLLS + + PS L TLT + LP
Sbjct: 5 WGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLP 44
>gi|149999371 hypothetical protein LOC91056 [Homo sapiens]
Length = 821
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 21 ISTPHSWPNSPSLGVGAPIILWPGLC-----PLFSSFLPLLSRL 59
+S P +WP P AP++L P LC L + LL+RL
Sbjct: 316 LSFPENWPLGPEGEEAAPLLLGPQLCRGLLPSLLHDPMALLARL 359
>gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]
Length = 363
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 32 SLGVGAPIILWPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLPQLYSP 86
+LGV A + PG+CP +S PL + RA+ T L L+ LPQ P
Sbjct: 309 ALGVAAVPAVLPGICPHPASSQPLGASSRAAQ---------TFLPLSPLPQRAHP 354
>gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo
sapiens]
Length = 363
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 32 SLGVGAPIILWPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLPQLYSP 86
+LGV A + PG+CP +S PL + RA+ T L L+ LPQ P
Sbjct: 309 ALGVAAVPAVLPGICPHPASSQPLGASSRAAQ---------TFLPLSPLPQRAHP 354
>gi|218505706 ankyrin repeat and SOCS box-containing 14 isoform 1
[Homo sapiens]
Length = 423
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 46 CPLFSSFLPLLSRLRA 61
CP+F SFLPL +RL+A
Sbjct: 389 CPVFMSFLPLPNRLKA 404
>gi|18390333 ankyrin repeat and SOCS box-containing 14 isoform 2
[Homo sapiens]
Length = 302
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 46 CPLFSSFLPLLSRLRA 61
CP+F SFLPL +RL+A
Sbjct: 268 CPVFMSFLPLPNRLKA 283
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 26.9 bits (58), Expect = 3.6
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 19 SGISTPHSWPNSPSLGVGAPIILWPGLCPLFS------SFLPLLSRLRASSRKHPSVLLT 72
SG+ +P S SP V +P P PL S S +PLLS + + PS+L++
Sbjct: 324 SGVPSPPSDVPSPPSDVPSP----PSDVPLLSGVPSPLSDVPLLSGVPSPPSDVPSLLMS 379
Query: 73 TTLTLTSLPQLYSPLLILLGSKFFPVLQTLSPLCAACTGL 112
L S L SP + + S V LS + ++ +G+
Sbjct: 380 PHRLLMSHYSLVSPHRLDVPSLLSDVPSLLSGVPSSPSGV 419
>gi|156151443 alpha-kinase 1 [Homo sapiens]
Length = 1244
Score = 26.6 bits (57), Expect = 4.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 1 MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIIL 41
+GMW W S+ Y + P S SLG+ A I +
Sbjct: 207 LGMWYEAAELIWASIVGYLALPQPDKKGLSTSLGILADIFV 247
>gi|156151441 alpha-kinase 1 [Homo sapiens]
Length = 1244
Score = 26.6 bits (57), Expect = 4.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 1 MGMWGRGLVRAWGSVCHYSGISTPHSWPNSPSLGVGAPIIL 41
+GMW W S+ Y + P S SLG+ A I +
Sbjct: 207 LGMWYEAAELIWASIVGYLALPQPDKKGLSTSLGILADIFV 247
>gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens]
Length = 706
Score = 26.2 bits (56), Expect = 6.1
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 38 PIILWPGLCP-----LFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLPQLYSPLLILLG 92
P++L GL L+S FL S+L R S+ +++SLP+ L LG
Sbjct: 586 PLVLLLGLAISSVPLLYSIFLIPPSKLCGPFRGQSSIWAQIPESISSLPETTQNFLFFLG 645
Query: 93 SKFFPV-LQTLSPLCAACT 110
++ F V L +S + A T
Sbjct: 646 TQAFAVPLLLISSILMAYT 664
>gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens]
Length = 712
Score = 26.2 bits (56), Expect = 6.1
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 38 PIILWPGLCP-----LFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLPQLYSPLLILLG 92
P++L GL L+S FL S+L R S+ +++SLP+ L LG
Sbjct: 592 PLVLLLGLAISSVPLLYSIFLIPPSKLCGPFRGQSSIWAQIPESISSLPETTQNFLFFLG 651
Query: 93 SKFFPV-LQTLSPLCAACT 110
++ F V L +S + A T
Sbjct: 652 TQAFAVPLLLISSILMAYT 670
>gi|42516561 ubiquitin specific protease 33 isoform 3 [Homo sapiens]
Length = 828
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 17 HYSGISTPHSWPNS----PSLGVGAPII--LWPGLCPLFSSFLPLLSRLRASSRKHPSVL 70
H + +STP P++ P L P LWPGL P + + +K+ SV+
Sbjct: 416 HSNDLSTPQILPSNEGVNPRLSASPPKSGNLWPGLAPPHKKAQSASPKRKKQHKKYRSVI 475
>gi|42516567 ubiquitin specific protease 33 isoform 1 [Homo sapiens]
Length = 942
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 17 HYSGISTPHSWPNS----PSLGVGAPII--LWPGLCPLFSSFLPLLSRLRASSRKHPSVL 70
H + +STP P++ P L P LWPGL P + + +K+ SV+
Sbjct: 416 HSNDLSTPQILPSNEGVNPRLSASPPKSGNLWPGLAPPHKKAQSASPKRKKQHKKYRSVI 475
>gi|42516565 ubiquitin specific protease 33 isoform 2 [Homo sapiens]
Length = 911
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 17 HYSGISTPHSWPNS----PSLGVGAPII--LWPGLCPLFSSFLPLLSRLRASSRKHPSVL 70
H + +STP P++ P L P LWPGL P + + +K+ SV+
Sbjct: 385 HSNDLSTPQILPSNEGVNPRLSASPPKSGNLWPGLAPPHKKAQSASPKRKKQHKKYRSVI 444
>gi|148727311 hypothetical protein LOC389690 [Homo sapiens]
Length = 1318
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 64 RKHPSVLLTTTLTLTSLPQLYSPLLILLGSKFF--PVLQTLSPLCAACTGLSEGSRKP 119
R+ P+VL +L S + + IL+ +KF PVL + P AA T L++G P
Sbjct: 996 RQIPAVLRQLLPSLQSPQERERKVAILILTKFLYSPVLLEVLPKQAALTVLAQGLHDP 1053
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,033,159
Number of Sequences: 37866
Number of extensions: 219735
Number of successful extensions: 603
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 22
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.