Guide to the Human Genome
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Name: C8orf86 Sequence: fasta or formatted (223aa) NCBI GI: 46409448
Description:

hypothetical protein LOC389649

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         12           1
 C cysteine            3.1          7           1
 D aspartate           1.3          3           1
 E glutamate           8.1         18           2
 F phenylalanine       1.8          4           1
 G glycine             7.2         16           1
 H histidine           2.2          5           1
 I isoleucine          4.9         11           2
 K lysine              4.5         10           1
 L leucine            12.6         28           2
 M methionine          1.3          3           1
 N asparagine          1.8          4           1
 P proline             8.5         19           3
 Q glutamine           4.0          9           2
 R arginine            9.4         21           3
 S serine             10.8         24           2
 T threonine           4.9         11           1
 V valine              5.4         12           2
 W tryptophan          1.8          4           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC389649 
LOC100293276          0.016   PREDICTED: similar to hCG1995379 
LOC100291463          0.016   PREDICTED: hypothetical protein XP_002347548 
LOC100286989          0.016   PREDICTED: hypothetical protein XP_002342186 
DBF4B                 0.012   DBF4 homolog B isoform 1 
THRAP3                0.012   thyroid hormone receptor associated protein 3 [Homo...
VCAN                  0.007   versican isoform 1 
C9orf86               0.007   Rab-like GTP-binding protein 1 isoform 1 
ECT2L                 0.007   epithelial cell transforming sequence 2 oncogene-li...
ARHGEF5               0.007   rho guanine nucleotide exchange factor 5 
SPHK2                 0.007   sphingosine kinase 2 
BCAR3                 0.007   breast cancer antiestrogen resistance 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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