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Search of human proteins with 239741357
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741357 PREDICTED: hypothetical protein XP_002342183 [Homo
sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752933 PREDICTED: hypothetical protein [Homo sapiens] 373 e-104
gi|239747485 PREDICTED: hypothetical protein XP_002347546 [Homo ... 373 e-104
gi|239741357 PREDICTED: hypothetical protein XP_002342183 [Homo ... 373 e-104
gi|28559039 mediator complex subunit 1 [Homo sapiens] 36 0.020
gi|23397642 GREB1 protein isoform a [Homo sapiens] 36 0.020
gi|151301154 mucin 6, gastric [Homo sapiens] 33 0.13
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.13
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.17
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 33 0.17
gi|239752939 PREDICTED: hypothetical protein [Homo sapiens] 32 0.29
gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo ... 32 0.29
gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo ... 32 0.29
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 32 0.29
gi|58743369 hypothetical protein LOC139231 [Homo sapiens] 32 0.29
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 32 0.29
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 32 0.38
gi|4758392 forkhead box D1 [Homo sapiens] 31 0.66
gi|207028748 N-myc downstream regulated 1 [Homo sapiens] 30 0.86
gi|37655183 N-myc downstream regulated 1 [Homo sapiens] 30 0.86
gi|83367077 mucin 16 [Homo sapiens] 30 0.86
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 30 0.86
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 30 0.86
gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo ... 30 0.86
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 30 0.86
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 30 0.86
gi|239754961 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|239749500 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|239743636 PREDICTED: hypothetical protein XP_002342910 [Homo ... 30 1.1
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 30 1.1
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
>gi|239752933 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 373 bits (958), Expect = e-104
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS 60
MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS
Sbjct: 24 MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS 83
Query: 61 QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV 120
QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV
Sbjct: 84 QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV 143
Query: 121 SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS 180
SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS
Sbjct: 144 SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS 203
>gi|239747485 PREDICTED: hypothetical protein XP_002347546 [Homo
sapiens]
Length = 180
Score = 373 bits (958), Expect = e-104
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS 60
MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS
Sbjct: 1 MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS 60
Query: 61 QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV 120
QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV
Sbjct: 61 QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV 120
Query: 121 SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS 180
SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS
Sbjct: 121 SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS 180
>gi|239741357 PREDICTED: hypothetical protein XP_002342183 [Homo
sapiens]
Length = 180
Score = 373 bits (958), Expect = e-104
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS 60
MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS
Sbjct: 1 MSAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPAS 60
Query: 61 QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV 120
QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV
Sbjct: 61 QRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARV 120
Query: 121 SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS 180
SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS
Sbjct: 121 SCSVILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFSDSFANKVFRKGLEKPERRHAAQS 180
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 35.8 bits (81), Expect = 0.020
Identities = 43/135 (31%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Query: 4 APTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVT----------RGGMKVR 53
A TE + SHS S + PP G + SA G T G +
Sbjct: 1015 ADTEGKSPSHSSSNRPFTPPTSTGGSKSPGSAGRSQTPPGVATPPIPKITIQIPKGTVMV 1074
Query: 54 HSPSPASQRTIR---SSWGCRSMHCRSIGTKARAAFSGSRLAS-SSGSSSSLVSGS---- 105
PS SQ T SS G +S H S + + A+ SG +S S GSSSS +S S
Sbjct: 1075 GKPSSHSQYTSSGSVSSSGSKSHHSHSSSSSSSASTSGKMKSSKSEGSSSSKLSSSMYSS 1134
Query: 106 --DSGGSDLFTSSRA 118
SG S SS++
Sbjct: 1135 QGSSGSSQSKNSSQS 1149
Score = 35.0 bits (79), Expect = 0.035
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 16 SPQLPQPPQEQPGGLTTA---SAHLRSVGSGWVTRGGMKVRHSPSPASQRTIRSSWGCRS 72
+P +P+ + P G S+H + SG V+ G K HS S +S + +S +S
Sbjct: 1057 TPPIPKITIQIPKGTVMVGKPSSHSQYTSSGSVSSSGSKSHHSHSSSSSSSASTSGKMKS 1116
Query: 73 MHCR--SIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVSCSVILGPQ 129
S + + +S + SS S +S SG G S + + S S + PQ
Sbjct: 1117 SKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQ 1175
>gi|23397642 GREB1 protein isoform a [Homo sapiens]
Length = 1949
Score = 35.8 bits (81), Expect = 0.020
Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 2 SAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPASQ 61
SA PT H+RSPQ P+ P E+ S G RHSP P Q
Sbjct: 1146 SAQPTALPQGEHARSPQ-PRGPAEEGRAPGEKQRPRASQGPPSAIS-----RHSPGPTPQ 1199
Query: 62 RTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVS 103
G RS+ + S S+L+SSSGSSSS V+
Sbjct: 1200 PDCSLRTGQRSV-------QVSVTSSCSQLSSSSGSSSSSVA 1234
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 33.1 bits (74), Expect = 0.13
Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 8 ATALSH--SRSPQLPQPPQEQPGG--LTTASAHLRSVGSGWVTRGGMKVRHSPSPASQRT 63
ATA S S S LPQ +P +TT HL S + T + SPSP++ T
Sbjct: 2081 ATASSSFISSSSWLPQNSSSRPPSSPITTQLPHLSSATTPVSTTNQLSSSFSPSPSAPST 2140
Query: 64 IRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVSCS 123
+ S S H S T + + + S S+ S++L SGS S + S + S
Sbjct: 2141 VSSY--VPSSH-SSPQTSSPSVGTSSSFVSAPVHSTTLSSGSHS------SLSTHPTTAS 2191
Query: 124 VILGPQFWDLPQGHLTCPDPVKLWPPQWVHCPFS 157
V P F P T ++ P + PF+
Sbjct: 2192 VSASPLFPSSPAASTT----IRATLPHTISSPFT 2221
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.1 bits (74), Expect = 0.13
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 55 SPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFT 114
SP+PA + +R R K R++ S S +SSS SSSS S S S S +
Sbjct: 2581 SPTPAPKEAVREG---RPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2637
Query: 115 SSRARVSCS 123
SS + S S
Sbjct: 2638 SSSSSSSSS 2646
Score = 28.1 bits (61), Expect = 4.3
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 77 SIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDL 112
S + + ++ S S +SSS SSSS S SDS GS L
Sbjct: 2533 SSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2568
Score = 28.1 bits (61), Expect = 4.3
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 56 PSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGS 105
P+PA ++ SS S S + + ++ S S +SSS SSSS S S
Sbjct: 2598 PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647
Score = 27.7 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 56 PSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGS 110
P P + R S S S + + ++ S S +SSS SSSS S S S S
Sbjct: 2596 PEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 32.7 bits (73), Expect = 0.17
Identities = 30/127 (23%), Positives = 52/127 (40%)
Query: 2 SAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPASQ 61
S++ + +++ S S + + + GG T + + S + S S +S
Sbjct: 2567 SSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSS 2626
Query: 62 RTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVS 121
+ SS S S + + ++ S S +SSS SSSS S S + D SS +
Sbjct: 2627 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAA 2686
Query: 122 CSVILGP 128
+ GP
Sbjct: 2687 PAPTAGP 2693
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 32.7 bits (73), Expect = 0.17
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 46 TRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGS 105
+R + R+ S + R+ SS S S G+ + + S SR SS SSSS SGS
Sbjct: 560 SRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSR---SSSSSSSSTSGS 616
Query: 106 DSGGSDLFTSS 116
S S TSS
Sbjct: 617 SSRDSSSSTSS 627
Score = 31.6 bits (70), Expect = 0.38
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 54 HSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLF 113
H S + +T S G R+ +K+R+ S S +SSS +SSS S S SG S
Sbjct: 549 HPESKSKTKTRSRSRG----RARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSR 604
Query: 114 TSSRARVSCS 123
+SS + S S
Sbjct: 605 SSSSSSSSTS 614
>gi|239752939 PREDICTED: hypothetical protein [Homo sapiens]
Length = 310
Score = 32.0 bits (71), Expect = 0.29
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 42 SGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRS-IGTKARAAFSGSRLASSSGSSSS 100
+G +T GG+K+++ SPA + R S G R+ + G+ A S R +S+S SSS+
Sbjct: 156 AGHLTCGGLKLKYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSA 215
Query: 101 LVSGSDSGGSDLFTSSRARVSCS 123
+ +S AR S S
Sbjct: 216 RACSLSRSRASRLPASVARSSPS 238
>gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo
sapiens]
Length = 310
Score = 32.0 bits (71), Expect = 0.29
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 42 SGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRS-IGTKARAAFSGSRLASSSGSSSS 100
+G +T GG+K+++ SPA + R S G R+ + G+ A S R +S+S SSS+
Sbjct: 156 AGHLTCGGLKLKYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSA 215
Query: 101 LVSGSDSGGSDLFTSSRARVSCS 123
+ +S AR S S
Sbjct: 216 RACSLSRSRASRLPASVARSSPS 238
>gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo
sapiens]
Length = 310
Score = 32.0 bits (71), Expect = 0.29
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 42 SGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRS-IGTKARAAFSGSRLASSSGSSSS 100
+G +T GG+K+++ SPA + R S G R+ + G+ A S R +S+S SSS+
Sbjct: 156 AGHLTCGGLKLKYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSA 215
Query: 101 LVSGSDSGGSDLFTSSRARVSCS 123
+ +S AR S S
Sbjct: 216 RACSLSRSRASRLPASVARSSPS 238
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 32.0 bits (71), Expect = 0.29
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 71 RSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVS 121
RS+H S + + ++ S S +SSS SSSS S S S S +SS S
Sbjct: 144 RSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFS 194
Score = 31.2 bits (69), Expect = 0.50
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 76 RSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVSCSVILGP 128
RSI T + ++ S S +SSS SSSS S S S S +SS + S + P
Sbjct: 144 RSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKP 196
Score = 26.9 bits (58), Expect = 9.5
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 79 GTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVSCS 123
G R+ + S +SSS SSSS S S S S +SS + S S
Sbjct: 140 GDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 184
>gi|58743369 hypothetical protein LOC139231 [Homo sapiens]
Length = 388
Score = 32.0 bits (71), Expect = 0.29
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 54 HSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLF 113
HSP QR R +W + C S + A+ AS+S SS+S+VS + S GS +
Sbjct: 251 HSPR---QRPAREAWKRSNFSCASTSGVSGAS------ASASSSSASMVSSASSSGSSVG 301
Query: 114 TSS 116
S+
Sbjct: 302 NSA 304
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 32.0 bits (71), Expect = 0.29
Identities = 37/120 (30%), Positives = 48/120 (40%), Gaps = 4/120 (3%)
Query: 2 SAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGG-MKVRHSPSPAS 60
+AA A+ ++ + P PQP PG ASA RS S + S S +S
Sbjct: 342 AAAAAAASGVTTGKPPAPPQPGGPAPG--RNASARRRSSSSSSSSSASRTSSSRSSSRSS 399
Query: 61 QRTIRSSWGCRS-MHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRAR 119
R+ R RS H RS + S SR S S S SG S ++ S AR
Sbjct: 400 SRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPAR 459
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 31.6 bits (70), Expect = 0.38
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 21 QPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRH---SPSPASQRTIRSSWGCRSMH--- 74
+P + G L A+ +S G R + R +P+PAS++ G S
Sbjct: 2076 EPVSPKNGVLPQATGDQKSGGKCETDRRMVAARTEPLTPNPASKKPRVHKRGSESSSDSD 2135
Query: 75 ---------CRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVSCS 123
RS + + ++ S SR SSS SSSS S S S S +SS + S S
Sbjct: 2136 SDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSS 2193
Score = 28.5 bits (62), Expect = 3.3
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Query: 6 TEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPASQRTIR 65
T+ ++ P P P ++P + + S R R S S +S
Sbjct: 2100 TDRRMVAARTEPLTPNPASKKPR-VHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSH 2158
Query: 66 SSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSD 106
S G S S + + ++ S + +SSS SSSS S SD
Sbjct: 2159 SRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSD 2199
Score = 27.7 bits (60), Expect = 5.6
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 57 SPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSD 111
S S R+ SS H RS + + ++ S +SSS S+SS S S S +
Sbjct: 2141 SSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEE 2195
Score = 26.9 bits (58), Expect = 9.5
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 55 SPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLFT 114
S S + + RSS RS S + + + S +SSS SS+S S S + S +
Sbjct: 2130 SSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSS 2189
Query: 115 SSRARVSCS 123
SS + S S
Sbjct: 2190 SSSSEESDS 2198
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 30.8 bits (68), Expect = 0.66
Identities = 30/116 (25%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 2 SAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGM--KVRHSPSPA 59
+AA A A H SP P PP L + R G G + + P
Sbjct: 294 AAAAAAAAAAFHPHSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAGGPG 353
Query: 60 SQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSL------VSGSDSGG 109
+ RS + S+ S+G A AA + A++ S S GS GG
Sbjct: 354 ASALARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGG 409
>gi|207028748 N-myc downstream regulated 1 [Homo sapiens]
Length = 394
Score = 30.4 bits (67), Expect = 0.86
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 5 PTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPASQRTI 64
PT+ T L + LPQ QP L A + G G++ M AS ++
Sbjct: 278 PTKTTLLKMADCGGLPQI--SQPAKLAEAFKYFVQ-GMGYMPSASMTRLMRSRTASGSSV 334
Query: 65 RSSWGCRSMHCRSIGTKARAAFS---GSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVS 121
S G RS S GT++R+ S SR +S G+ + S + G+ S VS
Sbjct: 335 TSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAHLDITPNSGAAGNSAGPKS-MEVS 393
Query: 122 C 122
C
Sbjct: 394 C 394
>gi|37655183 N-myc downstream regulated 1 [Homo sapiens]
Length = 394
Score = 30.4 bits (67), Expect = 0.86
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 5 PTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPASQRTI 64
PT+ T L + LPQ QP L A + G G++ M AS ++
Sbjct: 278 PTKTTLLKMADCGGLPQI--SQPAKLAEAFKYFVQ-GMGYMPSASMTRLMRSRTASGSSV 334
Query: 65 RSSWGCRSMHCRSIGTKARAAFS---GSRLASSSGSSSSLVSGSDSGGSDLFTSSRARVS 121
S G RS S GT++R+ S SR +S G+ + S + G+ S VS
Sbjct: 335 TSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAHLDITPNSGAAGNSAGPKS-MEVS 393
Query: 122 C 122
C
Sbjct: 394 C 394
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 30.4 bits (67), Expect = 0.86
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 17/144 (11%)
Query: 7 EATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSP--SPASQRTI 64
EAT++ + L PG + AS ++ +G G++T G + H P + AS T
Sbjct: 1010 EATSIREPSTTILTTETTNGPGSMAVASTNI-PIGKGYITEGRLDTSHLPIGTTASSETS 1068
Query: 65 RSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSDLF-TSSR----AR 119
+ S+ +GS S+ G +S V D+ D++ +SR R
Sbjct: 1069 MDFTMAKESVSMSVSPSQSMDAAGS---STPGRTSQFV---DTFSDDVYHLTSREITIPR 1122
Query: 120 VSCSVILGPQFWDLPQGHLTCPDP 143
S L PQ + H PDP
Sbjct: 1123 DGTSSALTPQ---MTATHPPSPDP 1143
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 30.4 bits (67), Expect = 0.86
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 81 KARAAFSGS-----RLASSSGSSSSLVSGSDSGGSDLFTSSRA 118
K R+A SGS R +S+S S SS +GS SG S SSR+
Sbjct: 64 KRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 30.4 bits (67), Expect = 0.86
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 81 KARAAFSGS-----RLASSSGSSSSLVSGSDSGGSDLFTSSRA 118
K R+A SGS R +S+S S SS +GS SG S SSR+
Sbjct: 64 KRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
>gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo
sapiens]
Length = 271
Score = 30.4 bits (67), Expect = 0.86
Identities = 28/109 (25%), Positives = 37/109 (33%), Gaps = 15/109 (13%)
Query: 3 AAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGWVTRGGMKVRHSPSPASQR 62
AA SR + P+ + GGLTTA L + + T P S
Sbjct: 74 AAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGRLSTAAAKGATH---------PPVSFP 124
Query: 63 TIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGSD 111
R SWG S G + G L S + + VS G+D
Sbjct: 125 RTRESWGAHS------GKEDETLHQGQGLTSLAAFPGASVSPDGESGAD 167
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 30.4 bits (67), Expect = 0.86
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 81 KARAAFSGS-----RLASSSGSSSSLVSGSDSGGSDLFTSSRA 118
K R+A SGS R +S+S S SS +GS SG S SSR+
Sbjct: 64 KRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 30.4 bits (67), Expect = 0.86
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 81 KARAAFSGS-----RLASSSGSSSSLVSGSDSGGSDLFTSSRA 118
K R+A SGS R +S+S S SS +GS SG S SSR+
Sbjct: 64 KRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
>gi|239754961 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 30.0 bits (66), Expect = 1.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 91 LASSSGSSSSLVSGSDSGGSDLFTSSRARVSCSVILGPQFWDLPQGHLTCP 141
L SS S+ SG+D + LFT S ++ SV+ +FW + +CP
Sbjct: 71 LISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLY--RFWKSKRAFSSCP 119
>gi|239749500 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 30.0 bits (66), Expect = 1.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 91 LASSSGSSSSLVSGSDSGGSDLFTSSRARVSCSVILGPQFWDLPQGHLTCP 141
L SS S+ SG+D + LFT S ++ SV+ +FW + +CP
Sbjct: 71 LISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLY--RFWKSKRAFSSCP 119
>gi|239743636 PREDICTED: hypothetical protein XP_002342910 [Homo
sapiens]
Length = 122
Score = 30.0 bits (66), Expect = 1.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 91 LASSSGSSSSLVSGSDSGGSDLFTSSRARVSCSVILGPQFWDLPQGHLTCP 141
L SS S+ SG+D + LFT S ++ SV+ +FW + +CP
Sbjct: 71 LISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLY--RFWKSKRAFSSCP 119
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 30.0 bits (66), Expect = 1.1
Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 16/115 (13%)
Query: 2 SAAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSV------GSGWVTRGGMKVRHS 55
SA+P +L S PQP P + +H +S GS ++GG + +
Sbjct: 384 SASPASVRSLGRFSSVSSPQPRSRHPSSSSDTWSHSQSSDTIVSDGSTLSSKGGSEGQPE 443
Query: 56 PSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSLVSGSDSGGS 110
S AS + G R + SG A +S + S SG SG S
Sbjct: 444 SSTASNSVVPPPQ----------GGSGRGSPSGGSTAEASDTLSIRSSGQLSGRS 488
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 29.6 bits (65), Expect = 1.5
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 32 TASAHLRSVGSGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRL 91
+AS S SGW + V S S AS + S W S SI + + +
Sbjct: 236 SASGASTSSDSGWASPSASWVSTSTSRASTSS-DSGWASSSASWDSITSDSGWVCPSASW 294
Query: 92 ASSSGSSSSLVSGSDSGGSDLFTSSRARVSCS 123
ASSS S +S + SDSG S S + +S S
Sbjct: 295 ASSSASWAS--APSDSGSSSPSVSRASTLSVS 324
Score = 28.5 bits (62), Expect = 3.3
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 42 SGWVTRGGMKVRHSPSPASQRTIRSSWGCRSMHCRSIGTKARAAFSGSRLASSSGSSSSL 101
SGW + + S S AS + S W S S T + S S ASSS S S+
Sbjct: 223 SGWASSSASCISPSASGASTSS-DSGWASPSASWVSTSTSRASTSSDSGWASSSASWDSI 281
Query: 102 VSGS 105
S S
Sbjct: 282 TSDS 285
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.126 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,418,540
Number of Sequences: 37866
Number of extensions: 429435
Number of successful extensions: 2937
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 2486
Number of HSP's gapped (non-prelim): 332
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.