Guide to the Human Genome
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Name: LOC100289278 Sequence: fasta or formatted (122aa) NCBI GI: 239749500
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {122aa} PREDICTED: hypothetical protein XP_002342910
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          7           1
 C cysteine            5.7          7           1
 D aspartate           2.5          3           1
 E glutamate           0.8          1           1
 F phenylalanine       9.0         11           2
 G glycine             4.9          6           1
 H histidine           0.8          1           1
 I isoleucine          4.1          5           1
 K lysine              4.9          6           1
 L leucine             8.2         10           1
 M methionine          6.6          8           2
 N asparagine          1.6          2           1
 P proline             4.1          5           1
 Q glutamine           0.0          0           0
 R arginine            6.6          8           1
 S serine             21.3         26           3
 T threonine           4.9          6           1
 V valine              4.9          6           1
 W tryptophan          2.5          3           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293533          1.000   PREDICTED: hypothetical protein 
LOC100289278          1.000   PREDICTED: hypothetical protein XP_002342910 
KRT16                 0.031   keratin 16 
KRT14                 0.027   keratin 14 
LOC100293437          0.022   PREDICTED: hypothetical protein 
LOC100291237          0.022   PREDICTED: hypothetical protein XP_002347546 
LOC100289532          0.022   PREDICTED: hypothetical protein XP_002342183 
CRKRS                 0.013   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.013   Cdc2-related kinase, arginine/serine-rich isoform 1...
CDC2L5                0.013   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.013   cell division cycle 2-like 5 isoform 2 
LOC729815             0.004   PREDICTED: hypothetical protein 
LOC729815             0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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