Guide to the Human Genome
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Name: LOC100294172 Sequence: fasta or formatted (295aa) NCBI GI: 239740668
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.9         41           1
 C cysteine            1.4          4           2
 D aspartate           0.7          2           1
 E glutamate           1.0          3           1
 F phenylalanine       2.7          8           1
 G glycine             8.1         24           2
 H histidine           3.1          9           1
 I isoleucine          2.4          7           1
 K lysine              1.4          4           1
 L leucine             1.0          3           1
 M methionine          6.8         20           1
 N asparagine          1.4          4           1
 P proline            10.5         31           2
 Q glutamine           0.3          1           1
 R arginine            9.5         28           6
 S serine             12.2         36           3
 T threonine          14.2         42           2
 V valine              6.1         18           1
 W tryptophan          3.4         10           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293456          1.000   PREDICTED: hypothetical protein 
LOC100287108          1.000   PREDICTED: hypothetical protein 
LOC100287108          1.000   PREDICTED: hypothetical protein XP_002342658 
LOC100294499          1.000   PREDICTED: hypothetical protein 
LOC100294290          1.000   PREDICTED: hypothetical protein XP_002344064 
LOC100294201          1.000   PREDICTED: hypothetical protein 
LOC100294122          1.000   PREDICTED: hypothetical protein 
LOC100294234          0.827   PREDICTED: hypothetical protein 
MUC5AC                0.043   mucin 5AC 
MUC5B                 0.043   mucin 5, subtype B, tracheobronchial 
LOC100133756          0.038   PREDICTED: hypothetical protein, partial 
MUC3A                 0.034   PREDICTED: mucin 3A, cell surface associated, parti...
LOC100132635          0.032   PREDICTED: similar to mucin 5, partial 
MUC3A                 0.032   PREDICTED: mucin 3A, intestinal 
EMID1                 0.032   EMI domain containing 1 
LOC100134138          0.031   PREDICTED: similar to mucin, partial 
MUC21                 0.029   mucin 21 
COL27A1               0.029   collagen, type XXVII, alpha 1 
LOC646509             0.029   PREDICTED: hypothetical protein 
LOC729792             0.027   PREDICTED: hypothetical protein 
LOC729792             0.027   PREDICTED: hypothetical protein 
LOC729792             0.027   PREDICTED: hypothetical protein 
LOC100294501          0.027   PREDICTED: hypothetical protein 
LOC100294249          0.027   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.027   PREDICTED: hypothetical protein 
LOC100294204          0.027   PREDICTED: hypothetical protein 
LOC100294136          0.027   PREDICTED: hypothetical protein 
LOC100294091          0.027   PREDICTED: hypothetical protein 
LOC730401             0.027   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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