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Search of human proteins with 239740847
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740847 PREDICTED: hypothetical protein XP_002344050 [Homo
sapiens]
(102 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740910 PREDICTED: hypothetical protein XP_002344083 [Homo ... 214 9e-57
gi|239740847 PREDICTED: hypothetical protein XP_002344050 [Homo ... 214 9e-57
gi|239740794 PREDICTED: hypothetical protein [Homo sapiens] 214 9e-57
gi|239740739 PREDICTED: hypothetical protein [Homo sapiens] 214 9e-57
gi|239740654 PREDICTED: hypothetical protein [Homo sapiens] 214 9e-57
gi|239740689 PREDICTED: hypothetical protein [Homo sapiens] 212 6e-56
gi|239513949 PREDICTED: hypothetical protein [Homo sapiens] 212 6e-56
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 33 0.048
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 33 0.048
gi|196114999 special AT-rich sequence binding protein 1 [Homo sa... 33 0.063
gi|4506791 special AT-rich sequence binding protein 1 [Homo sapi... 33 0.063
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] 32 0.082
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens] 32 0.082
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 32 0.082
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 32 0.082
gi|90903231 huntingtin [Homo sapiens] 32 0.14
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 30 0.31
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 30 0.31
gi|110347429 mediator complex subunit 12 [Homo sapiens] 30 0.41
gi|209862782 hypothetical protein LOC730130 [Homo sapiens] 30 0.41
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 30 0.53
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 30 0.53
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 30 0.53
gi|169636435 caudal type homeobox 2 [Homo sapiens] 29 0.70
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 29 0.70
gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 29 0.70
gi|38158015 mastermind-like 3 [Homo sapiens] 29 0.70
gi|162951884 R3H domain containing 2 [Homo sapiens] 29 0.70
gi|189491742 ataxin 7 isoform b [Homo sapiens] 29 0.91
gi|4506797 ataxin 7 isoform a [Homo sapiens] 29 0.91
>gi|239740910 PREDICTED: hypothetical protein XP_002344083 [Homo
sapiens]
Length = 102
Score = 214 bits (546), Expect = 9e-57
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
Query: 61 DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61 DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
>gi|239740847 PREDICTED: hypothetical protein XP_002344050 [Homo
sapiens]
Length = 102
Score = 214 bits (546), Expect = 9e-57
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
Query: 61 DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61 DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
>gi|239740794 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 214 bits (546), Expect = 9e-57
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
Query: 61 DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61 DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
>gi|239740739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 214 bits (546), Expect = 9e-57
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
Query: 61 DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61 DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
>gi|239740654 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 214 bits (546), Expect = 9e-57
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
Query: 61 DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61 DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
>gi|239740689 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 212 bits (539), Expect = 6e-56
Identities = 101/102 (99%), Positives = 101/102 (99%)
Query: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
Query: 61 DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
DRLVG AVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61 DRLVGLAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
>gi|239513949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 212 bits (539), Expect = 6e-56
Identities = 101/102 (99%), Positives = 101/102 (99%)
Query: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1 MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
Query: 61 DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
DRLVG AVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61 DRLVGLAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 33.1 bits (74), Expect = 0.048
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 63 LVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQ 98
LV R+ R G QQQ+Q++QQ+Q ++ +P+P Q
Sbjct: 482 LVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQ 517
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 33.1 bits (74), Expect = 0.048
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 63 LVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQ 98
LV R+ R G QQQ+Q++QQ+Q ++ +P+P Q
Sbjct: 482 LVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQ 517
>gi|196114999 special AT-rich sequence binding protein 1 [Homo
sapiens]
Length = 763
Score = 32.7 bits (73), Expect = 0.063
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 42 VFQQVAEAVRAVEEPMHHDDRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
+++Q + AV HH DR + + QQ+Q++QQ+Q ++ P PP+PQ P
Sbjct: 566 IYEQESNAVH------HHGDR-PPHIIHVPAEQIQQQQQQQQQQQQQQQAPPPPQPQQQP 618
>gi|4506791 special AT-rich sequence binding protein 1 [Homo
sapiens]
Length = 763
Score = 32.7 bits (73), Expect = 0.063
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 42 VFQQVAEAVRAVEEPMHHDDRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
+++Q + AV HH DR + + QQ+Q++QQ+Q ++ P PP+PQ P
Sbjct: 566 IYEQESNAVH------HHGDR-PPHIIHVPAEQIQQQQQQQQQQQQQQQAPPPPQPQQQP 618
>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
Length = 429
Score = 32.3 bits (72), Expect = 0.082
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 66 RAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQ 98
R G +QQQ+Q++QQ P + +P PP+PQ
Sbjct: 335 RMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQ 367
Score = 30.8 bits (68), Expect = 0.24
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 75 QQQRQERQQKQDPRRGEPLPPEPQHAP 101
QQQ+Q++QQ+Q P +P P PQ P
Sbjct: 342 QQQQQQQQQQQPPPPPQPQPQPPQPQP 368
>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
Length = 437
Score = 32.3 bits (72), Expect = 0.082
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 66 RAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQ 98
R G +QQQ+Q++QQ P + +P PP+PQ
Sbjct: 343 RMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQ 375
Score = 30.8 bits (68), Expect = 0.24
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 75 QQQRQERQQKQDPRRGEPLPPEPQHAP 101
QQQ+Q++QQ+Q P +P P PQ P
Sbjct: 350 QQQQQQQQQQQPPPPPQPQPQPPQPQP 376
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 32.3 bits (72), Expect = 0.082
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 66 RAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQ 98
R G +QQQ+Q++QQ P + +P PP+PQ
Sbjct: 403 RMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQ 435
Score = 30.8 bits (68), Expect = 0.24
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 75 QQQRQERQQKQDPRRGEPLPPEPQHAP 101
QQQ+Q++QQ+Q P +P P PQ P
Sbjct: 410 QQQQQQQQQQQPPPPPQPQPQPPQPQP 436
>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
Length = 499
Score = 32.3 bits (72), Expect = 0.082
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 66 RAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQ 98
R G +QQQ+Q++QQ P + +P PP+PQ
Sbjct: 405 RMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQ 437
Score = 30.8 bits (68), Expect = 0.24
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 75 QQQRQERQQKQDPRRGEPLPPEPQHAP 101
QQQ+Q++QQ+Q P +P P PQ P
Sbjct: 412 QQQQQQQQQQQPPPPPQPQPQPPQPQP 438
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQ 98
+QQQ+Q++QQ+Q P P PP PQ
Sbjct: 28 QQQQQQQQQQQQQPPPPPPPPPPPQ 52
Score = 31.2 bits (69), Expect = 0.18
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
+QQQ+Q++QQ+Q ++ +P PP P P
Sbjct: 23 QQQQQQQQQQQQQQQQQQPPPPPPPPPP 50
Score = 30.0 bits (66), Expect = 0.41
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
+QQQ+Q++QQ+Q ++ P PP P P
Sbjct: 24 QQQQQQQQQQQQQQQQQPPPPPPPPPPP 51
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
+QQQ+Q++QQ+Q ++ + PP P P
Sbjct: 21 QQQQQQQQQQQQQQQQQQQQPPPPPPPP 48
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
+QQQ+Q++QQ+Q P PP P P
Sbjct: 27 QQQQQQQQQQQQQQPPPPPPPPPPPQLP 54
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
+QQQ+Q++QQ+Q ++ + PP P P
Sbjct: 22 QQQQQQQQQQQQQQQQQQQPPPPPPPPP 49
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPE-PQHAP 101
+QQQ+Q++QQ+ P P PP+ PQ P
Sbjct: 30 QQQQQQQQQQQPPPPPPPPPPPQLPQPPP 58
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 30.4 bits (67), Expect = 0.31
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQ 98
+QQQ+Q++QQ+Q ++ + PP+PQ
Sbjct: 223 QQQQQQQQQQQQQQQQPQQQPPQPQ 247
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 72 GCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
G +QQQ+Q++QQ+Q ++ + +PQ P
Sbjct: 214 GLQQQQQQQQQQQQQQQQQQQQQQQPQQQP 243
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 30.4 bits (67), Expect = 0.31
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQ 98
+QQQ+Q++QQ+Q ++ + PP+PQ
Sbjct: 223 QQQQQQQQQQQQQQQQPQQQPPQPQ 247
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 72 GCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
G +QQQ+Q++QQ+Q ++ + +PQ P
Sbjct: 214 GLQQQQQQQQQQQQQQQQQQQQQQQPQQQP 243
>gi|110347429 mediator complex subunit 12 [Homo sapiens]
Length = 2177
Score = 30.0 bits (66), Expect = 0.41
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQ 98
+QQQ+Q++QQ Q ++ + PP+PQ
Sbjct: 2106 QQQQQQQQQQHQQQQQQQAAPPQPQ 2130
Score = 29.6 bits (65), Expect = 0.53
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
+QQQ+Q++ Q+Q ++ P P+PQ P
Sbjct: 2108 QQQQQQQQHQQQQQQQAAPPQPQPQSQP 2135
>gi|209862782 hypothetical protein LOC730130 [Homo sapiens]
Length = 380
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 69 GRGGCKQQQRQERQQKQDPRRGEPLPP 95
GR +QQQ+Q++QQ+Q R P+PP
Sbjct: 183 GRQRRRQQQQQQQQQQQQRRGALPVPP 209
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 29.6 bits (65), Expect = 0.53
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 71 GGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
GG + +ER Q + PRR P P P+ AP
Sbjct: 98 GGVEAASGEERSQPRRPRRPPPAPRRPRPAP 128
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 70 RGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
RGG ++ + R++++ P PP P ++P
Sbjct: 186 RGGFSGREEEPRRERRQPSLQRSTPPAPTYSP 217
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 29.6 bits (65), Expect = 0.53
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 71 GGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
GG + +ER Q + PRR P P P+ AP
Sbjct: 98 GGVEAASGEERSQPRRPRRPPPAPRRPRPAP 128
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 70 RGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
RGG ++ + R++++ P PP P ++P
Sbjct: 186 RGGFSGREEEPRRERRQPSLQRSTPPAPTYSP 217
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 29.6 bits (65), Expect = 0.53
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 71 GGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
GG + +ER Q + PRR P P P+ AP
Sbjct: 98 GGVEAASGEERSQPRRPRRPPPAPRRPRPAP 128
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 70 RGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
RGG ++ + R++++ P PP P ++P
Sbjct: 186 RGGFSGREEEPRRERRQPSLQRSTPPAPTYSP 217
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
K+ Q+Q++QQ P P PP+PQ P
Sbjct: 247 KKLQQQQQQQPPQPPPPPPQPPQPQPGP 274
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 41 DVFQQVAEAVRAVEEPMHHDDRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHA 100
D ++VA+ + A+ D + V RAV Q+++E+ +K R E LPPEP
Sbjct: 483 DAAEEVAQEMVALGLVCEADYQPVARAVRERVAAIQRKREKLRK--ARELEALPPEPGPP 540
Query: 101 PA 102
PA
Sbjct: 541 PA 542
>gi|119226260 calcium homeostasis endoplasmic reticulum protein
[Homo sapiens]
Length = 916
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 74 KQQQRQERQQKQDPR-----RGEPLPPEPQHAPA 102
+QQQ+Q++QQ Q P+ + P PP P APA
Sbjct: 332 QQQQQQQQQQLQMPQMEAEVKATPPPPAPPPAPA 365
>gi|38158015 mastermind-like 3 [Homo sapiens]
Length = 1133
Score = 29.3 bits (64), Expect = 0.70
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQ 98
+QQQ+Q++QQ+Q ++ +P PP+ Q
Sbjct: 629 QQQQQQQQQQQQQQQQQQPPPPQLQ 653
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 75 QQQRQERQQKQDPRRGEPLPPEPQHAP 101
QQQ+Q++QQ+Q ++ + PP AP
Sbjct: 629 QQQQQQQQQQQQQQQQQQPPPPQLQAP 655
>gi|162951884 R3H domain containing 2 [Homo sapiens]
Length = 976
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 73 CKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
C QQ+Q++QQ+Q P LPP PQ P
Sbjct: 401 CTAQQQQQQQQQQLPA----LPPTPQQQP 425
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 51 RAVEEPMHHDDRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
RA ++ R A G +Q+Q++QQ+Q P P P QH P
Sbjct: 4 RAADDVRGEPRRAAAAAGGAAAAAARQQQQQQQQQQP--PPPQPQRQQHPP 52
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 51 RAVEEPMHHDDRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
RA ++ R A G +Q+Q++QQ+Q P P P QH P
Sbjct: 4 RAADDVRGEPRRAAAAAGGAAAAAARQQQQQQQQQQP--PPPQPQRQQHPP 52
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,558,750
Number of Sequences: 37866
Number of extensions: 196089
Number of successful extensions: 2570
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1981
Number of HSP's gapped (non-prelim): 447
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.