Guide to the Human Genome
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Name: LOC100294105 Sequence: fasta or formatted (102aa) NCBI GI: 239740654
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9          7           1
 C cysteine            3.9          4           1
 D aspartate           3.9          4           2
 E glutamate           5.9          6           2
 F phenylalanine       1.0          1           1
 G glycine             7.8          8           2
 H histidine           3.9          4           2
 I isoleucine          1.0          1           1
 K lysine              3.9          4           1
 L leucine             4.9          5           1
 M methionine          2.9          3           2
 N asparagine          1.0          1           1
 P proline             9.8         10           2
 Q glutamine           9.8         10           3
 R arginine           11.8         12           2
 S serine              5.9          6           2
 T threonine           5.9          6           2
 V valine              8.8          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294313          1.000   PREDICTED: hypothetical protein XP_002344083 
LOC100294272          1.000   PREDICTED: hypothetical protein XP_002344050 
LOC100294222          1.000   PREDICTED: hypothetical protein 
LOC100294186          1.000   PREDICTED: hypothetical protein 
LOC100294158          0.989   PREDICTED: hypothetical protein 
LOC100133352          0.989   PREDICTED: hypothetical protein 
NCOR2                 0.042   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.042   nuclear receptor co-repressor 2 isoform 1 
SATB1                 0.042   special AT-rich sequence binding protein 1 
SATB1                 0.042   special AT-rich sequence binding protein 1 
MEF2A                 0.037   myocyte enhancer factor 2A isoform 4 
MEF2A                 0.037   myocyte enhancer factor 2A isoform 3 
MEF2A                 0.037   myocyte enhancer factor 2A isoform 2 
MEF2A                 0.037   myocyte enhancer factor 2A isoform 1 
HTT                   0.037   huntingtin 
SMARCA2               0.026   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.026   SWI/SNF-related matrix-associated actin-dependent re...
MED12                 0.026   mediator complex subunit 12 
LOC730130             0.026   hypothetical protein LOC730130 
LOC100131455          0.026   PREDICTED: hypothetical protein 
LOC100131455          0.026   PREDICTED: hypothetical protein 
LOC100131455          0.026   PREDICTED: hypothetical protein 
CDX2                  0.021   caudal type homeobox 2 
WNK4                  0.021   WNK lysine deficient protein kinase 4 
CHERP                 0.021   calcium homeostasis endoplasmic reticulum protein [...
MAML3                 0.021   mastermind-like 3 
R3HDM2                0.021   R3H domain containing 2 
ATXN7                 0.021   ataxin 7 isoform b 
ATXN7                 0.021   ataxin 7 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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