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Search of human proteins with 239740726
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740726 PREDICTED: similar to HLA complex group 27 [Homo
sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740726 PREDICTED: similar to HLA complex group 27 [Homo sa... 296 2e-81
gi|40217843 cartilage oligomeric matrix protein precursor [Homo ... 36 0.010
gi|84490388 R-spondin1 [Homo sapiens] 29 0.97
gi|169201741 PREDICTED: hypothetical protein [Homo sapiens] 29 0.97
gi|169201345 PREDICTED: hypothetical protein [Homo sapiens] 29 0.97
gi|169188544 PREDICTED: hypothetical protein [Homo sapiens] 29 0.97
gi|38787970 tensin like C1 domain containing phosphatase isoform... 29 0.97
gi|38787957 tensin like C1 domain containing phosphatase isoform... 29 0.97
gi|38787941 tensin like C1 domain containing phosphatase isoform... 29 0.97
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 29 0.97
gi|150456424 RW1 protein [Homo sapiens] 29 0.97
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 29 1.3
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 29 1.3
gi|31542760 hypothetical protein LOC220108 [Homo sapiens] 29 1.3
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 28 2.2
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 28 2.2
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 28 2.2
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 28 2.2
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 28 2.2
gi|9506545 delta-like 4 protein precursor [Homo sapiens] 27 3.7
gi|157676340 zinc finger protein 142 [Homo sapiens] 27 3.7
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap... 27 3.7
gi|66932972 GTP cyclohydrolase 1 isoform 3 [Homo sapiens] 27 4.8
gi|66932970 GTP cyclohydrolase 1 isoform 2 [Homo sapiens] 27 4.8
gi|66932968 GTP cyclohydrolase 1 isoform 1 [Homo sapiens] 27 4.8
gi|4503949 GTP cyclohydrolase 1 isoform 1 [Homo sapiens] 27 4.8
gi|239757277 PREDICTED: hypothetical protein [Homo sapiens] 27 4.8
gi|239751780 PREDICTED: hypothetical protein [Homo sapiens] 27 4.8
gi|239746275 PREDICTED: hypothetical protein XP_002343721 [Homo ... 27 4.8
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 27 4.8
>gi|239740726 PREDICTED: similar to HLA complex group 27 [Homo
sapiens]
Length = 133
Score = 296 bits (759), Expect = 2e-81
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MEAFSWPLSCGFSSGRRSQFPSERPRGGRCLPGVTQQQEEFPDPGIRGRPVGGAEAHFST 60
MEAFSWPLSCGFSSGRRSQFPSERPRGGRCLPGVTQQQEEFPDPGIRGRPVGGAEAHFST
Sbjct: 1 MEAFSWPLSCGFSSGRRSQFPSERPRGGRCLPGVTQQQEEFPDPGIRGRPVGGAEAHFST 60
Query: 61 HLSPNPPWCFKRVKIPDRAPGWTRNYCPAGLHFHSGRCEFPAAGDQKPEGSSAHPSPQRR 120
HLSPNPPWCFKRVKIPDRAPGWTRNYCPAGLHFHSGRCEFPAAGDQKPEGSSAHPSPQRR
Sbjct: 61 HLSPNPPWCFKRVKIPDRAPGWTRNYCPAGLHFHSGRCEFPAAGDQKPEGSSAHPSPQRR 120
Query: 121 YSVSISVNTCHFP 133
YSVSISVNTCHFP
Sbjct: 121 YSVSISVNTCHFP 133
>gi|40217843 cartilage oligomeric matrix protein precursor [Homo
sapiens]
Length = 757
Score = 35.8 bits (81), Expect = 0.010
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 9 SCGFSSGRRSQFPSERP----RGGRCLPGVTQQQEEFPDPGIRGRPVGGAEAHFSTHLSP 64
+CG R+ PS RP G C PGV Q E G R P +H +
Sbjct: 71 ACGMQQSVRTGLPSVRPLLHCAPGFCFPGVACIQTE---SGARCGPCPAGFTGNGSHCTD 127
Query: 65 ----NPPWCFKRVKIPDRAPGWTRNYCPAG 90
N CF RV+ + +PG+ CP G
Sbjct: 128 VNECNAHPCFPRVRCINTSPGFRCEACPPG 157
>gi|84490388 R-spondin1 [Homo sapiens]
Length = 263
Score = 29.3 bits (64), Expect = 0.97
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 5/27 (18%)
Query: 87 CPAGLHFHSGRCEFPAAGDQKPEGSSA 113
C GL+ H GRC +PA PEGSSA
Sbjct: 114 CKEGLYLHKGRC-YPAC----PEGSSA 135
>gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 29.3 bits (64), Expect = 0.97
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 32 PGVTQQQEE------FPDPGIRGRPVGGAEAHFSTHLSPNPPWCFKR-----VKIPDRAP 80
PGV +E P G RG P GG + S PW +R + P R P
Sbjct: 83 PGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSRGP 142
Query: 81 GWTRNYC 87
G R C
Sbjct: 143 GGERRVC 149
>gi|169201345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 29.3 bits (64), Expect = 0.97
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 32 PGVTQQQEE------FPDPGIRGRPVGGAEAHFSTHLSPNPPWCFKR-----VKIPDRAP 80
PGV +E P G RG P GG + S PW +R + P R P
Sbjct: 83 PGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSRGP 142
Query: 81 GWTRNYC 87
G R C
Sbjct: 143 GGERRVC 149
>gi|169188544 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 29.3 bits (64), Expect = 0.97
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 32 PGVTQQQEE------FPDPGIRGRPVGGAEAHFSTHLSPNPPWCFKR-----VKIPDRAP 80
PGV +E P G RG P GG + S PW +R + P R P
Sbjct: 83 PGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSRGP 142
Query: 81 GWTRNYC 87
G R C
Sbjct: 143 GGERRVC 149
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 29.3 bits (64), Expect = 0.97
Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 23/122 (18%)
Query: 7 PLSCGFSSGRRSQFPSERPRGGRCLPGVTQQQEEFPDPGIRGRPVGGA----EAHFSTHL 62
P+S F S +P ER GG + PG+R P G ++ + L
Sbjct: 849 PVSPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDGSPL 908
Query: 63 SPNP---PWCFKRVKIPDRAPGWTRNYCPAGLHFHSGRCEFPAAGDQKPEGSSAHPSPQR 119
+P P PW + P +P PA FP A G S P P++
Sbjct: 909 TPVPSQMPWLVASPEPPQSSP------TPA----------FPLAASYDTNGLSQPPLPEK 952
Query: 120 RY 121
R+
Sbjct: 953 RH 954
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 29.3 bits (64), Expect = 0.97
Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 23/122 (18%)
Query: 7 PLSCGFSSGRRSQFPSERPRGGRCLPGVTQQQEEFPDPGIRGRPVGGA----EAHFSTHL 62
P+S F S +P ER GG + PG+R P G ++ + L
Sbjct: 973 PVSPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDGSPL 1032
Query: 63 SPNP---PWCFKRVKIPDRAPGWTRNYCPAGLHFHSGRCEFPAAGDQKPEGSSAHPSPQR 119
+P P PW + P +P PA FP A G S P P++
Sbjct: 1033 TPVPSQMPWLVASPEPPQSSP------TPA----------FPLAASYDTNGLSQPPLPEK 1076
Query: 120 RY 121
R+
Sbjct: 1077 RH 1078
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 29.3 bits (64), Expect = 0.97
Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 23/122 (18%)
Query: 7 PLSCGFSSGRRSQFPSERPRGGRCLPGVTQQQEEFPDPGIRGRPVGGA----EAHFSTHL 62
P+S F S +P ER GG + PG+R P G ++ + L
Sbjct: 983 PVSPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDGSPL 1042
Query: 63 SPNP---PWCFKRVKIPDRAPGWTRNYCPAGLHFHSGRCEFPAAGDQKPEGSSAHPSPQR 119
+P P PW + P +P PA FP A G S P P++
Sbjct: 1043 TPVPSQMPWLVASPEPPQSSP------TPA----------FPLAASYDTNGLSQPPLPEK 1086
Query: 120 RY 121
R+
Sbjct: 1087 RH 1088
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 29.3 bits (64), Expect = 0.97
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 22 SERPRGGRCLPGVTQQQEEFPDPGIRGRPVGGAEAHFSTHLSPNPPWCFKRVKIPDRAP 80
S PRGG+ G ++E +P I P GG+ A L P P + +P R P
Sbjct: 1206 SSTPRGGKDADGSLAKEER--EPAIALAPRGGSLAPVKRPLPPPPGSSPRASHVPSRLP 1262
>gi|150456424 RW1 protein [Homo sapiens]
Length = 1883
Score = 29.3 bits (64), Expect = 0.97
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 80 PGWTRNYCPAGLHFHSGRCEFPAAGDQKPEGSSAHP 115
PG +R +C AG G P+AG K G S HP
Sbjct: 1190 PGHSRGFCGAG-----GSSSRPSAGSHKQCGPSVHP 1220
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 28.9 bits (63), Expect = 1.3
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 45 GIRGRPVGGAEAHFSTHLSPNPPWCFKRVKIPDRAPGWTRNYCPAGLHFHSG-------- 96
G RG P G E S SP + R + RAPG P F G
Sbjct: 685 GGRG-PEPGVEPQDSRRRSPQEGPTWSRGRRSPRAPGE-----PTPASFFIGDQNGDAVL 738
Query: 97 -RCEFPAAGDQKPEGSSAHPSPQRRYSVSISVN 128
R A GD + G +A PSP R V +S N
Sbjct: 739 SRKPLAAPGDGEGLGQTAQPSPPARDGVYVSAN 771
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo
sapiens]
Length = 1554
Score = 28.9 bits (63), Expect = 1.3
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 45 GIRGRPVGGAEAHFSTHLSPNPPWCFKRVKIPDRAPGWTRNYCPAGLHFHSG-------- 96
G RG P G E S SP + R + RAPG P F G
Sbjct: 755 GGRG-PEPGVEPQDSRRRSPQEGPTWSRGRRSPRAPGE-----PTPASFFIGDQNGDAVL 808
Query: 97 -RCEFPAAGDQKPEGSSAHPSPQRRYSVSISVN 128
R A GD + G +A PSP R V +S N
Sbjct: 809 SRKPLAAPGDGEGLGQTAQPSPPARDGVYVSAN 841
>gi|31542760 hypothetical protein LOC220108 [Homo sapiens]
Length = 582
Score = 28.9 bits (63), Expect = 1.3
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 32 PGVTQQQE-EFPDPG-IRGRPVGGAEAHFS--THLSPNPPWCFKRVK 74
PG +QQ P PG IR G + F+ + +PNPPW F+R K
Sbjct: 351 PGSSQQSPLNSPHPGPIRTGLPPGHQQEFAGRANSTPNPPWSFQRSK 397
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 28.1 bits (61), Expect = 2.2
Identities = 32/120 (26%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 7 PLSCGFSSGRRSQFPSERPRGGRCL-PGVTQQQEEFPDPGIRGRPVGGAEAHFSTHLSPN 65
P S G SS R P RP GR PG P P +P A + + L P
Sbjct: 83 PSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADL-PE 141
Query: 66 PPWCFKRVKIPDRAPGWTRNYCPAGLHFHSG---------RCEFPA-AGDQKPEGSSAHP 115
PW + + + G R G +G C P A +P G +HP
Sbjct: 142 WPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHP 201
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 28.1 bits (61), Expect = 2.2
Identities = 32/120 (26%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 7 PLSCGFSSGRRSQFPSERPRGGRCL-PGVTQQQEEFPDPGIRGRPVGGAEAHFSTHLSPN 65
P S G SS R P RP GR PG P P +P A + + L P
Sbjct: 83 PSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADL-PE 141
Query: 66 PPWCFKRVKIPDRAPGWTRNYCPAGLHFHSG---------RCEFPA-AGDQKPEGSSAHP 115
PW + + + G R G +G C P A +P G +HP
Sbjct: 142 WPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHP 201
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 28.1 bits (61), Expect = 2.2
Identities = 30/110 (27%), Positives = 38/110 (34%), Gaps = 18/110 (16%)
Query: 20 FPSERPRGGRCLPGVTQQQEEFP--------DPGIRGRPVGGAEAHFSTHLSPNPPWCFK 71
FP P G PG+ P P G P G H +H P PP
Sbjct: 243 FPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMP 302
Query: 72 RVKIPDRAPGWTRNYCPAGL-HFHSGRCEFPAAGDQ---KPEGSSAHPSP 117
P + ++ P GL H H+G P +G Q +P HP P
Sbjct: 303 H---PGMSQMQLAHHGPHGLGHPHAGP---PGSGGQPPPRPPPGMPHPGP 346
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 28.1 bits (61), Expect = 2.2
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 15 GRRSQFPSERPRGGRCLPGVTQQQEEFPDPGIRGRPVGGAEAHFSTHLSPNPPWCFKRVK 74
G +FP ++P PG T E G+ G P GA +H P+ P+
Sbjct: 305 GPAGRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSH--PSGPYSQASAA 362
Query: 75 IPDRA 79
P A
Sbjct: 363 APQPA 367
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 28.1 bits (61), Expect = 2.2
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 15 GRRSQFPSERPRGGRCLPGVTQQQEEFPDPGIRGRPVGGAEAHFSTHLSPNPPWCFKRVK 74
G +FP ++P PG T E G+ G P GA +H P+ P+
Sbjct: 301 GPAGRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSH--PSGPYSQASAA 358
Query: 75 IPDRA 79
P A
Sbjct: 359 APQPA 363
>gi|9506545 delta-like 4 protein precursor [Homo sapiens]
Length = 685
Score = 27.3 bits (59), Expect = 3.7
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 80 PGWTRNYCP-----AGLHFHSGRCEFPA 102
PGWT YC +G H +G C PA
Sbjct: 210 PGWTGEYCQQPICLSGCHEQNGYCSKPA 237
>gi|157676340 zinc finger protein 142 [Homo sapiens]
Length = 1687
Score = 27.3 bits (59), Expect = 3.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 46 IRGRPVGGAEAHFSTHLSPNPPWCFKR 72
+ G V G E+ F TH+ P CFK+
Sbjct: 148 LEGDVVSGTESLFKTHMCPECKRCFKK 174
>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
sapiens]
Length = 501
Score = 27.3 bits (59), Expect = 3.7
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 64 PNPPWCFKRVKIPDRAPGWTRNYCPAGLHFHSGRCEFPAAGDQKPEGSSAHP 115
P P + ++P AP PA F GRC F A Q G+ A P
Sbjct: 20 PAPMAAAREPELPQEAPATEPAPPPACRFFLEGRCRFGARCRQPHPGAPAPP 71
>gi|66932972 GTP cyclohydrolase 1 isoform 3 [Homo sapiens]
Length = 213
Score = 26.9 bits (58), Expect = 4.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 21 PSERPRGGRCLPGVTQQQEEFPDP 44
P+E+PRG RC G ++ P P
Sbjct: 9 PAEKPRGARCSNGFPERDPPRPGP 32
>gi|66932970 GTP cyclohydrolase 1 isoform 2 [Homo sapiens]
Length = 233
Score = 26.9 bits (58), Expect = 4.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 21 PSERPRGGRCLPGVTQQQEEFPDP 44
P+E+PRG RC G ++ P P
Sbjct: 9 PAEKPRGARCSNGFPERDPPRPGP 32
>gi|66932968 GTP cyclohydrolase 1 isoform 1 [Homo sapiens]
Length = 250
Score = 26.9 bits (58), Expect = 4.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 21 PSERPRGGRCLPGVTQQQEEFPDP 44
P+E+PRG RC G ++ P P
Sbjct: 9 PAEKPRGARCSNGFPERDPPRPGP 32
>gi|4503949 GTP cyclohydrolase 1 isoform 1 [Homo sapiens]
Length = 250
Score = 26.9 bits (58), Expect = 4.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 21 PSERPRGGRCLPGVTQQQEEFPDP 44
P+E+PRG RC G ++ P P
Sbjct: 9 PAEKPRGARCSNGFPERDPPRPGP 32
>gi|239757277 PREDICTED: hypothetical protein [Homo sapiens]
Length = 201
Score = 26.9 bits (58), Expect = 4.8
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 70 FKRVKIPDRAPGWTRNYCPAGLHFHSGRCEFPAAGDQKPEGSSAHPSP 117
F+ + P R P W+RN GL P +GD EG H P
Sbjct: 38 FQPLNQPARMPTWSRNIMVPGLG--------PGSGDGGGEGQRRHMVP 77
>gi|239751780 PREDICTED: hypothetical protein [Homo sapiens]
Length = 201
Score = 26.9 bits (58), Expect = 4.8
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 70 FKRVKIPDRAPGWTRNYCPAGLHFHSGRCEFPAAGDQKPEGSSAHPSP 117
F+ + P R P W+RN GL P +GD EG H P
Sbjct: 38 FQPLNQPARMPTWSRNIMVPGLG--------PGSGDGGGEGQRRHMVP 77
>gi|239746275 PREDICTED: hypothetical protein XP_002343721 [Homo
sapiens]
Length = 201
Score = 26.9 bits (58), Expect = 4.8
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 70 FKRVKIPDRAPGWTRNYCPAGLHFHSGRCEFPAAGDQKPEGSSAHPSP 117
F+ + P R P W+RN GL P +GD EG H P
Sbjct: 38 FQPLNQPARMPTWSRNIMVPGLG--------PGSGDGGGEGQRRHMVP 77
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 26.9 bits (58), Expect = 4.8
Identities = 29/109 (26%), Positives = 34/109 (31%), Gaps = 5/109 (4%)
Query: 25 PRGGRCLPGVTQQQEEFPDPGIRGRPVGGAEAHFSTHLSPNPPWCFKRVKIPDRAPGWTR 84
P+G L G Q DPG G P A + P +P APG
Sbjct: 582 PKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPG-APGPPG 640
Query: 85 NYCPAGLHFHSGRCEFPAAGDQKPEGSSAHPSPQRRYSVSISVNTCHFP 133
P G P G P G HP PQ + S+ C P
Sbjct: 641 EAGPRG----ELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDP 685
Score = 26.2 bits (56), Expect = 8.2
Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 22/128 (17%)
Query: 11 GFSSGRRSQFPSERPRGGRCLPGVTQQQEEFPDPGIRGR-----PVGGAEAHFSTHL--- 62
G+S G R P P G LPG ++ E PG G P G + S L
Sbjct: 1057 GYSEGTRPGPPG--PTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGK 1114
Query: 63 -SPNPPWCFKRVKI---------PDRAPGWTRNYCPAGLHFHSGRCEFPAAGDQKPEGS- 111
P+ FK +K P PG+ + P G+ GR P +K E
Sbjct: 1115 PGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGL 1174
Query: 112 -SAHPSPQ 118
A P P+
Sbjct: 1175 LRAPPGPR 1182
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,264,802
Number of Sequences: 37866
Number of extensions: 439207
Number of successful extensions: 1131
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1105
Number of HSP's gapped (non-prelim): 71
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.