Guide to the Human Genome
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Search of human proteins with 239740654

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740654 PREDICTED: hypothetical protein [Homo sapiens]
         (102 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239740910 PREDICTED: hypothetical protein XP_002344083 [Homo ...   214   9e-57
gi|239740847 PREDICTED: hypothetical protein XP_002344050 [Homo ...   214   9e-57
gi|239740794 PREDICTED: hypothetical protein [Homo sapiens]           214   9e-57
gi|239740739 PREDICTED: hypothetical protein [Homo sapiens]           214   9e-57
gi|239740654 PREDICTED: hypothetical protein [Homo sapiens]           214   9e-57
gi|239740689 PREDICTED: hypothetical protein [Homo sapiens]           212   6e-56
gi|239513949 PREDICTED: hypothetical protein [Homo sapiens]           212   6e-56
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    33   0.048
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    33   0.048
gi|196114999 special AT-rich sequence binding protein 1 [Homo sa...    33   0.063
gi|4506791 special AT-rich sequence binding protein 1 [Homo sapi...    33   0.063
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]       32   0.082
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]       32   0.082
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]       32   0.082
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]       32   0.082
gi|90903231 huntingtin [Homo sapiens]                                  32   0.14 
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...    30   0.31 
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...    30   0.31 
gi|110347429 mediator complex subunit 12 [Homo sapiens]                30   0.41 
gi|209862782 hypothetical protein LOC730130 [Homo sapiens]             30   0.41 
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]            30   0.53 
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]            30   0.53 
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]            30   0.53 
gi|169636435 caudal type homeobox 2 [Homo sapiens]                     29   0.70 
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]       29   0.70 
gi|119226260 calcium homeostasis endoplasmic reticulum protein [...    29   0.70 
gi|38158015 mastermind-like 3 [Homo sapiens]                           29   0.70 
gi|162951884 R3H domain containing 2 [Homo sapiens]                    29   0.70 
gi|189491742 ataxin 7 isoform b [Homo sapiens]                         29   0.91 
gi|4506797 ataxin 7 isoform a [Homo sapiens]                           29   0.91 

>gi|239740910 PREDICTED: hypothetical protein XP_002344083 [Homo
           sapiens]
          Length = 102

 Score =  214 bits (546), Expect = 9e-57
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
           MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60

Query: 61  DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
           DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61  DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102


>gi|239740847 PREDICTED: hypothetical protein XP_002344050 [Homo
           sapiens]
          Length = 102

 Score =  214 bits (546), Expect = 9e-57
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
           MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60

Query: 61  DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
           DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61  DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102


>gi|239740794 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 102

 Score =  214 bits (546), Expect = 9e-57
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
           MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60

Query: 61  DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
           DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61  DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102


>gi|239740739 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 102

 Score =  214 bits (546), Expect = 9e-57
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
           MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60

Query: 61  DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
           DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61  DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102


>gi|239740654 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 102

 Score =  214 bits (546), Expect = 9e-57
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
           MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60

Query: 61  DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
           DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61  DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102


>gi|239740689 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 102

 Score =  212 bits (539), Expect = 6e-56
 Identities = 101/102 (99%), Positives = 101/102 (99%)

Query: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
           MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60

Query: 61  DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
           DRLVG AVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61  DRLVGLAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102


>gi|239513949 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 102

 Score =  212 bits (539), Expect = 6e-56
 Identities = 101/102 (99%), Positives = 101/102 (99%)

Query: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60
           MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD
Sbjct: 1   MMGTTASRNPCTCSHRGRKLSLPSKRSSTVTTVPGCVYLIDVFQQVAEAVRAVEEPMHHD 60

Query: 61  DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102
           DRLVG AVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA
Sbjct: 61  DRLVGLAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAPA 102


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
           sapiens]
          Length = 2462

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 63  LVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQ 98
           LV R+  R G  QQQ+Q++QQ+Q  ++ +P+P   Q
Sbjct: 482 LVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQ 517


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
           sapiens]
          Length = 2524

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 63  LVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQ 98
           LV R+  R G  QQQ+Q++QQ+Q  ++ +P+P   Q
Sbjct: 482 LVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMPRSSQ 517


>gi|196114999 special AT-rich sequence binding protein 1 [Homo
           sapiens]
          Length = 763

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 42  VFQQVAEAVRAVEEPMHHDDRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           +++Q + AV       HH DR     +     + QQ+Q++QQ+Q  ++  P PP+PQ  P
Sbjct: 566 IYEQESNAVH------HHGDR-PPHIIHVPAEQIQQQQQQQQQQQQQQQAPPPPQPQQQP 618


>gi|4506791 special AT-rich sequence binding protein 1 [Homo
           sapiens]
          Length = 763

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 42  VFQQVAEAVRAVEEPMHHDDRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           +++Q + AV       HH DR     +     + QQ+Q++QQ+Q  ++  P PP+PQ  P
Sbjct: 566 IYEQESNAVH------HHGDR-PPHIIHVPAEQIQQQQQQQQQQQQQQQAPPPPQPQQQP 618


>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
          Length = 429

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 66  RAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQ 98
           R    G  +QQQ+Q++QQ   P + +P PP+PQ
Sbjct: 335 RMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQ 367



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 75  QQQRQERQQKQDPRRGEPLPPEPQHAP 101
           QQQ+Q++QQ+Q P   +P P  PQ  P
Sbjct: 342 QQQQQQQQQQQPPPPPQPQPQPPQPQP 368


>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
          Length = 437

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 66  RAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQ 98
           R    G  +QQQ+Q++QQ   P + +P PP+PQ
Sbjct: 343 RMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQ 375



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 75  QQQRQERQQKQDPRRGEPLPPEPQHAP 101
           QQQ+Q++QQ+Q P   +P P  PQ  P
Sbjct: 350 QQQQQQQQQQQPPPPPQPQPQPPQPQP 376


>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
          Length = 497

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 66  RAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQ 98
           R    G  +QQQ+Q++QQ   P + +P PP+PQ
Sbjct: 403 RMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQ 435



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 75  QQQRQERQQKQDPRRGEPLPPEPQHAP 101
           QQQ+Q++QQ+Q P   +P P  PQ  P
Sbjct: 410 QQQQQQQQQQQPPPPPQPQPQPPQPQP 436


>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
          Length = 499

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 66  RAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQ 98
           R    G  +QQQ+Q++QQ   P + +P PP+PQ
Sbjct: 405 RMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQ 437



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 75  QQQRQERQQKQDPRRGEPLPPEPQHAP 101
           QQQ+Q++QQ+Q P   +P P  PQ  P
Sbjct: 412 QQQQQQQQQQQPPPPPQPQPQPPQPQP 438


>gi|90903231 huntingtin [Homo sapiens]
          Length = 3144

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 74 KQQQRQERQQKQDPRRGEPLPPEPQ 98
          +QQQ+Q++QQ+Q P    P PP PQ
Sbjct: 28 QQQQQQQQQQQQQPPPPPPPPPPPQ 52



 Score = 31.2 bits (69), Expect = 0.18
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 74  KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           +QQQ+Q++QQ+Q  ++ +P PP P   P
Sbjct: 23  QQQQQQQQQQQQQQQQQQPPPPPPPPPP 50



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 74  KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           +QQQ+Q++QQ+Q  ++  P PP P   P
Sbjct: 24  QQQQQQQQQQQQQQQQQPPPPPPPPPPP 51



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 74  KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           +QQQ+Q++QQ+Q  ++ +  PP P   P
Sbjct: 21  QQQQQQQQQQQQQQQQQQQQPPPPPPPP 48



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 74  KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           +QQQ+Q++QQ+Q      P PP P   P
Sbjct: 27  QQQQQQQQQQQQQQPPPPPPPPPPPQLP 54



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 74  KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           +QQQ+Q++QQ+Q  ++ +  PP P   P
Sbjct: 22  QQQQQQQQQQQQQQQQQQQPPPPPPPPP 49



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 74  KQQQRQERQQKQDPRRGEPLPPE-PQHAP 101
           +QQQ+Q++QQ+  P    P PP+ PQ  P
Sbjct: 30  QQQQQQQQQQQPPPPPPPPPPPQLPQPPP 58


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 11/25 (44%), Positives = 20/25 (80%)

Query: 74  KQQQRQERQQKQDPRRGEPLPPEPQ 98
           +QQQ+Q++QQ+Q  ++ +  PP+PQ
Sbjct: 223 QQQQQQQQQQQQQQQQPQQQPPQPQ 247



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 72  GCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           G +QQQ+Q++QQ+Q  ++ +    +PQ  P
Sbjct: 214 GLQQQQQQQQQQQQQQQQQQQQQQQPQQQP 243


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 11/25 (44%), Positives = 20/25 (80%)

Query: 74  KQQQRQERQQKQDPRRGEPLPPEPQ 98
           +QQQ+Q++QQ+Q  ++ +  PP+PQ
Sbjct: 223 QQQQQQQQQQQQQQQQPQQQPPQPQ 247



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 72  GCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           G +QQQ+Q++QQ+Q  ++ +    +PQ  P
Sbjct: 214 GLQQQQQQQQQQQQQQQQQQQQQQQPQQQP 243


>gi|110347429 mediator complex subunit 12 [Homo sapiens]
          Length = 2177

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 11/25 (44%), Positives = 19/25 (76%)

Query: 74   KQQQRQERQQKQDPRRGEPLPPEPQ 98
            +QQQ+Q++QQ Q  ++ +  PP+PQ
Sbjct: 2106 QQQQQQQQQQHQQQQQQQAAPPQPQ 2130



 Score = 29.6 bits (65), Expect = 0.53
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 74   KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
            +QQQ+Q++ Q+Q  ++  P  P+PQ  P
Sbjct: 2108 QQQQQQQQHQQQQQQQAAPPQPQPQSQP 2135


>gi|209862782 hypothetical protein LOC730130 [Homo sapiens]
          Length = 380

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 69  GRGGCKQQQRQERQQKQDPRRGEPLPP 95
           GR   +QQQ+Q++QQ+Q  R   P+PP
Sbjct: 183 GRQRRRQQQQQQQQQQQQRRGALPVPP 209


>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 71  GGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           GG +    +ER Q + PRR  P P  P+ AP
Sbjct: 98  GGVEAASGEERSQPRRPRRPPPAPRRPRPAP 128



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 70  RGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           RGG   ++ + R++++ P      PP P ++P
Sbjct: 186 RGGFSGREEEPRRERRQPSLQRSTPPAPTYSP 217


>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 71  GGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           GG +    +ER Q + PRR  P P  P+ AP
Sbjct: 98  GGVEAASGEERSQPRRPRRPPPAPRRPRPAP 128



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 70  RGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           RGG   ++ + R++++ P      PP P ++P
Sbjct: 186 RGGFSGREEEPRRERRQPSLQRSTPPAPTYSP 217


>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 71  GGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           GG +    +ER Q + PRR  P P  P+ AP
Sbjct: 98  GGVEAASGEERSQPRRPRRPPPAPRRPRPAP 128



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 70  RGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           RGG   ++ + R++++ P      PP P ++P
Sbjct: 186 RGGFSGREEEPRRERRQPSLQRSTPPAPTYSP 217


>gi|169636435 caudal type homeobox 2 [Homo sapiens]
          Length = 313

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 74  KQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           K+ Q+Q++QQ   P    P PP+PQ  P
Sbjct: 247 KKLQQQQQQQPPQPPPPPPQPPQPQPGP 274


>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
          Length = 1243

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 41  DVFQQVAEAVRAVEEPMHHDDRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHA 100
           D  ++VA+ + A+      D + V RAV       Q+++E+ +K   R  E LPPEP   
Sbjct: 483 DAAEEVAQEMVALGLVCEADYQPVARAVRERVAAIQRKREKLRK--ARELEALPPEPGPP 540

Query: 101 PA 102
           PA
Sbjct: 541 PA 542


>gi|119226260 calcium homeostasis endoplasmic reticulum protein
           [Homo sapiens]
          Length = 916

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 5/34 (14%)

Query: 74  KQQQRQERQQKQDPR-----RGEPLPPEPQHAPA 102
           +QQQ+Q++QQ Q P+     +  P PP P  APA
Sbjct: 332 QQQQQQQQQQLQMPQMEAEVKATPPPPAPPPAPA 365


>gi|38158015 mastermind-like 3 [Homo sapiens]
          Length = 1133

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 11/25 (44%), Positives = 20/25 (80%)

Query: 74  KQQQRQERQQKQDPRRGEPLPPEPQ 98
           +QQQ+Q++QQ+Q  ++ +P PP+ Q
Sbjct: 629 QQQQQQQQQQQQQQQQQQPPPPQLQ 653



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 75  QQQRQERQQKQDPRRGEPLPPEPQHAP 101
           QQQ+Q++QQ+Q  ++ +  PP    AP
Sbjct: 629 QQQQQQQQQQQQQQQQQQPPPPQLQAP 655


>gi|162951884 R3H domain containing 2 [Homo sapiens]
          Length = 976

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)

Query: 73  CKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           C  QQ+Q++QQ+Q P     LPP PQ  P
Sbjct: 401 CTAQQQQQQQQQQLPA----LPPTPQQQP 425


>gi|189491742 ataxin 7 isoform b [Homo sapiens]
          Length = 945

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 51  RAVEEPMHHDDRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           RA ++      R    A G      +Q+Q++QQ+Q P    P P   QH P
Sbjct: 4   RAADDVRGEPRRAAAAAGGAAAAAARQQQQQQQQQQP--PPPQPQRQQHPP 52


>gi|4506797 ataxin 7 isoform a [Homo sapiens]
          Length = 892

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 51  RAVEEPMHHDDRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPEPQHAP 101
           RA ++      R    A G      +Q+Q++QQ+Q P    P P   QH P
Sbjct: 4   RAADDVRGEPRRAAAAAGGAAAAAARQQQQQQQQQQP--PPPQPQRQQHPP 52


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.131    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,558,750
Number of Sequences: 37866
Number of extensions: 196089
Number of successful extensions: 2570
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1981
Number of HSP's gapped (non-prelim): 447
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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