Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239508739
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508739 PREDICTED: similar to hCG2040562 [Homo sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754502 PREDICTED: similar to hCG2040562 [Homo sapiens] 556 e-159
gi|239749062 PREDICTED: hypothetical protein XP_002346902 [Homo ... 556 e-159
gi|239743088 PREDICTED: hypothetical protein XP_002342736 [Homo ... 556 e-159
gi|239508739 PREDICTED: similar to hCG2040562 [Homo sapiens] 556 e-159
gi|51479148 Rho GTPase activating protein 20 [Homo sapiens] 162 3e-40
gi|169213922 PREDICTED: hypothetical protein isoform 1 [Homo sap... 31 0.99
gi|169213920 PREDICTED: hypothetical protein isoform 2 [Homo sap... 31 0.99
gi|169214343 PREDICTED: hypothetical protein [Homo sapiens] 31 0.99
gi|169213300 PREDICTED: hypothetical protein [Homo sapiens] 31 0.99
gi|14249534 hypothetical protein LOC84915 [Homo sapiens] 29 3.8
gi|21536468 AXL receptor tyrosine kinase isoform 2 [Homo sapiens] 29 4.9
gi|21536466 AXL receptor tyrosine kinase isoform 1 [Homo sapiens] 29 4.9
gi|194473700 Src homology 3 domain-containing guanine nucleotide... 29 4.9
gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo sapi... 28 6.4
gi|169171936 PREDICTED: hypothetical protein LOC286002 [Homo sap... 28 6.4
gi|169171203 PREDICTED: hypothetical protein LOC286002 [Homo sap... 28 6.4
gi|169170737 PREDICTED: hypothetical protein LOC286002 [Homo sap... 28 6.4
gi|4758178 dynein, cytoplasmic 1, intermediate chain 1 isoform a... 28 6.4
gi|207113122 dynein, cytoplasmic 1, intermediate chain 1 isoform... 28 6.4
gi|24307983 FtsJ methyltransferase domain containing 2 [Homo sap... 28 6.4
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 28 6.4
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 28 6.4
gi|146134388 YLP motif containing 1 [Homo sapiens] 28 6.4
gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo sapiens] 28 8.4
gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens] 28 8.4
gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens] 28 8.4
gi|4505129 mutated in colorectal cancers isoform 2 [Homo sapiens] 28 8.4
gi|13787217 FAT tumor suppressor 2 precursor [Homo sapiens] 28 8.4
gi|21359974 vitrin [Homo sapiens] 28 8.4
>gi|239754502 PREDICTED: similar to hCG2040562 [Homo sapiens]
Length = 268
Score = 556 bits (1432), Expect = e-159
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60
MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL
Sbjct: 1 MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60
Query: 61 KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120
KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN
Sbjct: 61 KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120
Query: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180
DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI
Sbjct: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180
Query: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240
SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF
Sbjct: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240
Query: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268
NQQAPFFTDQLLACGGCGQPRLRAYSDL
Sbjct: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268
>gi|239749062 PREDICTED: hypothetical protein XP_002346902 [Homo
sapiens]
Length = 268
Score = 556 bits (1432), Expect = e-159
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60
MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL
Sbjct: 1 MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60
Query: 61 KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120
KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN
Sbjct: 61 KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120
Query: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180
DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI
Sbjct: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180
Query: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240
SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF
Sbjct: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240
Query: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268
NQQAPFFTDQLLACGGCGQPRLRAYSDL
Sbjct: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268
>gi|239743088 PREDICTED: hypothetical protein XP_002342736 [Homo
sapiens]
Length = 268
Score = 556 bits (1432), Expect = e-159
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60
MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL
Sbjct: 1 MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60
Query: 61 KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120
KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN
Sbjct: 61 KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120
Query: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180
DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI
Sbjct: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180
Query: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240
SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF
Sbjct: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240
Query: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268
NQQAPFFTDQLLACGGCGQPRLRAYSDL
Sbjct: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268
>gi|239508739 PREDICTED: similar to hCG2040562 [Homo sapiens]
Length = 268
Score = 556 bits (1432), Expect = e-159
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60
MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL
Sbjct: 1 MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60
Query: 61 KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120
KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN
Sbjct: 61 KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120
Query: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180
DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI
Sbjct: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180
Query: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240
SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF
Sbjct: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240
Query: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268
NQQAPFFTDQLLACGGCGQPRLRAYSDL
Sbjct: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268
>gi|51479148 Rho GTPase activating protein 20 [Homo sapiens]
Length = 1191
Score = 162 bits (410), Expect = 3e-40
Identities = 86/120 (71%), Positives = 92/120 (76%)
Query: 132 ITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINISLPMLRIAGPE 191
+ RYINLEKEKD PK I LKI KDI N AYSKTITVM+S T NE IN+SLPML I G E
Sbjct: 180 LQRYINLEKEKDYPKSIPLKIFAKDIGNCAYSKTITVMNSDTANEVINMSLPMLGITGSE 239
Query: 192 RGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLFNQQAPFFTDQL 251
R Y+LWVNSGKEEA L GHE YGIKMSHLRD+ALLTP KDSTT FN Q PF +QL
Sbjct: 240 RDYQLWVNSGKEEAPYPLIGHEYPYGIKMSHLRDSALLTPGSKDSTTPFNLQEPFLMEQL 299
Score = 53.1 bits (126), Expect = 2e-07
Identities = 26/37 (70%), Positives = 28/37 (75%)
Query: 95 RTLRIDSQVELGRGLHRQEEQLFLFNDLLGVAKLKYN 131
RTL ID + EL RGL RQE LFLFNDL VAK+KYN
Sbjct: 84 RTLLIDGRAELKRGLQRQERHLFLFNDLFVVAKIKYN 120
>gi|169213922 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 198
Score = 31.2 bits (69), Expect = 0.99
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 7 CSAQLGRTQAL-SYSGQWRTSSR--IRSGNGCLAGAEAQRTPCWIWRAADPTQGARLKPL 63
CS+ L RT A S++ R+ R I S +A C W A +PT AR +P
Sbjct: 27 CSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP- 85
Query: 64 GFDVGVGAPGWRGGIPVPRPLSVPLDPPQW 93
G R RP S P P W
Sbjct: 86 -----CSTRGPRRSRMALRPRSAPSRAPAW 110
>gi|169213920 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 198
Score = 31.2 bits (69), Expect = 0.99
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 7 CSAQLGRTQAL-SYSGQWRTSSR--IRSGNGCLAGAEAQRTPCWIWRAADPTQGARLKPL 63
CS+ L RT A S++ R+ R I S +A C W A +PT AR +P
Sbjct: 27 CSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP- 85
Query: 64 GFDVGVGAPGWRGGIPVPRPLSVPLDPPQW 93
G R RP S P P W
Sbjct: 86 -----CSTRGPRRSRMALRPRSAPSRAPAW 110
>gi|169214343 PREDICTED: hypothetical protein [Homo sapiens]
Length = 198
Score = 31.2 bits (69), Expect = 0.99
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 7 CSAQLGRTQAL-SYSGQWRTSSR--IRSGNGCLAGAEAQRTPCWIWRAADPTQGARLKPL 63
CS+ L RT A S++ R+ R I S +A C W A +PT AR +P
Sbjct: 27 CSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP- 85
Query: 64 GFDVGVGAPGWRGGIPVPRPLSVPLDPPQW 93
G R RP S P P W
Sbjct: 86 -----CSTRGPRRSRMALRPRSAPSRAPAW 110
>gi|169213300 PREDICTED: hypothetical protein [Homo sapiens]
Length = 198
Score = 31.2 bits (69), Expect = 0.99
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 7 CSAQLGRTQAL-SYSGQWRTSSR--IRSGNGCLAGAEAQRTPCWIWRAADPTQGARLKPL 63
CS+ L RT A S++ R+ R I S +A C W A +PT AR +P
Sbjct: 27 CSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP- 85
Query: 64 GFDVGVGAPGWRGGIPVPRPLSVPLDPPQW 93
G R RP S P P W
Sbjct: 86 -----CSTRGPRRSRMALRPRSAPSRAPAW 110
>gi|14249534 hypothetical protein LOC84915 [Homo sapiens]
Length = 452
Score = 29.3 bits (64), Expect = 3.8
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 59 RLKPLGFDVGVG---APGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVEL-GRGLHRQEE 114
+L P VG+ P G + P+P P PP P S + L GRGL
Sbjct: 135 KLSPAAVQVGIAPYPVPSTLGPLAYPKPPEAPAPPPGLPAAATAASVIPLPGRGLPLPPS 194
Query: 115 QLFLFNDLL 123
L + LL
Sbjct: 195 NLPSIHSLL 203
>gi|21536468 AXL receptor tyrosine kinase isoform 2 [Homo sapiens]
Length = 885
Score = 28.9 bits (63), Expect = 4.9
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 70 GAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFNDLLG 124
G W +PV P VPL PP+ R SQ +H QE + L LLG
Sbjct: 316 GPSSWTHWLPVETPEGVPLGPPENISATRNGSQA----FVHWQEPRAPLQGTLLG 366
>gi|21536466 AXL receptor tyrosine kinase isoform 1 [Homo sapiens]
Length = 894
Score = 28.9 bits (63), Expect = 4.9
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 70 GAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFNDLLG 124
G W +PV P VPL PP+ R SQ +H QE + L LLG
Sbjct: 316 GPSSWTHWLPVETPEGVPLGPPENISATRNGSQA----FVHWQEPRAPLQGTLLG 366
>gi|194473700 Src homology 3 domain-containing guanine nucleotide
exchange factor [Homo sapiens]
Length = 871
Score = 28.9 bits (63), Expect = 4.9
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 17/102 (16%)
Query: 96 TLRIDSQVELGRGLHRQEEQLFLFNDLLGVAKLK----YNITRYI-----------NLEK 140
T ++ V R +Q+ FLFND+L + K K YN+ Y N E
Sbjct: 663 TAYVEDTVLFSRRTSKQQVYFFLFNDVLIITKKKSEESYNVNDYSLRDQLLVESCDNEEL 722
Query: 141 EKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINISL 182
K S + ++ + ++ T+TV+ +H NE + + L
Sbjct: 723 NSSPGKNSSTMLYSRQ-SSASHLFTLTVLSNHA-NEKVEMLL 762
>gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 422
Score = 28.5 bits (62), Expect = 6.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 21 GQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARLKP 62
GQ + + G G LA +Q +PCW W G +P
Sbjct: 284 GQPGPAQAVPHGQGVLAPPASQWSPCWGWGRGPQVAGVAWEP 325
>gi|169171936 PREDICTED: hypothetical protein LOC286002 [Homo
sapiens]
Length = 159
Score = 28.5 bits (62), Expect = 6.4
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 54 PTQGARLKPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPR 95
P +G R P G WR G P P P S PL P P+
Sbjct: 30 PPEGRRGGPETESRASGRSSWRPGAPPPAPHSRPLGTPFPPQ 71
>gi|169171203 PREDICTED: hypothetical protein LOC286002 [Homo
sapiens]
Length = 159
Score = 28.5 bits (62), Expect = 6.4
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 54 PTQGARLKPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPR 95
P +G R P G WR G P P P S PL P P+
Sbjct: 30 PPEGRRGGPETESRASGRSSWRPGAPPPAPHSRPLGTPFPPQ 71
>gi|169170737 PREDICTED: hypothetical protein LOC286002 [Homo
sapiens]
Length = 159
Score = 28.5 bits (62), Expect = 6.4
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 54 PTQGARLKPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPR 95
P +G R P G WR G P P P S PL P P+
Sbjct: 30 PPEGRRGGPETESRASGRSSWRPGAPPPAPHSRPLGTPFPPQ 71
>gi|4758178 dynein, cytoplasmic 1, intermediate chain 1 isoform a
[Homo sapiens]
Length = 645
Score = 28.5 bits (62), Expect = 6.4
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 19/92 (20%)
Query: 92 QW---PRTLRIDSQVELGRGLHRQEEQLFLFNDLLGVAK---LKYNITRYINLEKEKDDP 145
QW P L++ S ELGR LH+ LGV+K + + ++ KE P
Sbjct: 125 QWDTDPSVLQLQSDSELGRRLHK-----------LGVSKVTQVDFLPREVVSYSKETQTP 173
Query: 146 KGISLKISTKDIENYAYSKTITVMDSHTENED 177
++ S +D E+ ++ DS EN+D
Sbjct: 174 --LATHQSEEDEEDEEMVESKVGQDSELENQD 203
>gi|207113122 dynein, cytoplasmic 1, intermediate chain 1 isoform b
[Homo sapiens]
Length = 628
Score = 28.5 bits (62), Expect = 6.4
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 19/92 (20%)
Query: 92 QW---PRTLRIDSQVELGRGLHRQEEQLFLFNDLLGVAK---LKYNITRYINLEKEKDDP 145
QW P L++ S ELGR LH+ LGV+K + + ++ KE P
Sbjct: 108 QWDTDPSVLQLQSDSELGRRLHK-----------LGVSKVTQVDFLPREVVSYSKETQTP 156
Query: 146 KGISLKISTKDIENYAYSKTITVMDSHTENED 177
++ S +D E+ ++ DS EN+D
Sbjct: 157 --LATHQSEEDEEDEEMVESKVGQDSELENQD 186
>gi|24307983 FtsJ methyltransferase domain containing 2 [Homo
sapiens]
Length = 835
Score = 28.5 bits (62), Expect = 6.4
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 150 LKISTKDIENYAYSKTITVMDSHTENEDINISLPMLRIAGPERGYKLWVNSGKEEASCLL 209
LK+ D+ +Y ++ I + + D+N+ +P+ I G + S + S +
Sbjct: 449 LKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQI 508
Query: 210 TGHEDLYGIKMSHLRDTALLTP 231
++ + ++DT L P
Sbjct: 509 KALAKIH----AFVQDTTLSEP 526
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 28.5 bits (62), Expect = 6.4
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 78 IPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFNDLLGVAKLKYNITRYIN 137
+P P PL+ P++P S V G + EEQ +L + L ++K + R IN
Sbjct: 503 VPSPGPLNTPVNP----------SSVMSPAGSSQAEEQQYL-DKLKQLSKYIEPLRRMIN 551
Query: 138 -LEKEKDDPKGISLKISTKDI 157
++K +D K +S S DI
Sbjct: 552 KIDKNEDRKKDLSKMKSLLDI 572
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 28.5 bits (62), Expect = 6.4
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 78 IPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFNDLLGVAKLKYNITRYIN 137
+P P PL+ P++P S V G + EEQ +L + L ++K + R IN
Sbjct: 463 VPSPGPLNTPVNP----------SSVMSPAGSSQAEEQQYL-DKLKQLSKYIEPLRRMIN 511
Query: 138 -LEKEKDDPKGISLKISTKDI 157
++K +D K +S S DI
Sbjct: 512 KIDKNEDRKKDLSKMKSLLDI 532
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 28.5 bits (62), Expect = 6.4
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 61 KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTL 97
KP G V AP R +PV RP VP+ PP P L
Sbjct: 1520 KPPGSIVRPSAPPARSSVPVTRP-PVPIPPPPPPPPL 1555
>gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo sapiens]
Length = 347
Score = 28.1 bits (61), Expect = 8.4
Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 26/110 (23%)
Query: 1 MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTP-------CWIWRA-- 51
+E C A LG L +G W+ RS AQ P W+ RA
Sbjct: 143 LESRSMCCAWLGSAVPLFGAG-WQLLPTARS--------PAQHPPESTSVLLNWVIRALG 193
Query: 52 --ADPTQGARLK-----PLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWP 94
PT+G PL DV PG G P+P PL PP +P
Sbjct: 194 PLVPPTEGGLWSDQVSWPLWEDVKTPEPG-EPGSPLPASPHPPLQPPAFP 242
>gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens]
Length = 1019
Score = 28.1 bits (61), Expect = 8.4
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 17/96 (17%)
Query: 85 SVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFNDLLGV----AKLKYNITRYINLEK 140
S+ +DP + R DSQ E L +L+ + A+LK + Y+ LEK
Sbjct: 782 SIHIDPLSYDVKPRGDSQ-------RLDLENAVLMQELMAMKEEMAELKAQL--YL-LEK 831
Query: 141 EKDDPKGISLKISTKDIENYAYSKTITVMDSHTENE 176
EK K + LK+ST++ + AY I + S E +
Sbjct: 832 EK---KALELKLSTREAQEQAYLVHIEHLKSEVEEQ 864
>gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens]
Length = 416
Score = 28.1 bits (61), Expect = 8.4
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 51 AADPTQGARLKPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDS 101
A +P P G+ V PG G+P+ P P + P T R S
Sbjct: 326 APEPRSATEPGPPGYSVSPAVPGRSPGLPIRSARRYPRSPARSPATGRTHS 376
>gi|4505129 mutated in colorectal cancers isoform 2 [Homo sapiens]
Length = 829
Score = 28.1 bits (61), Expect = 8.4
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 17/96 (17%)
Query: 85 SVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFNDLLGV----AKLKYNITRYINLEK 140
S+ +DP + R DSQ E L +L+ + A+LK + Y+ LEK
Sbjct: 592 SIHIDPLSYDVKPRGDSQ-------RLDLENAVLMQELMAMKEEMAELKAQL--YL-LEK 641
Query: 141 EKDDPKGISLKISTKDIENYAYSKTITVMDSHTENE 176
EK K + LK+ST++ + AY I + S E +
Sbjct: 642 EK---KALELKLSTREAQEQAYLVHIEHLKSEVEEQ 674
>gi|13787217 FAT tumor suppressor 2 precursor [Homo sapiens]
Length = 4349
Score = 28.1 bits (61), Expect = 8.4
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 113 EEQLFLFNDLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTI---TVM 169
E + F N GV LK +INL + P SLKI+ D +NYA T+ V
Sbjct: 606 ELEYFDLNHFSGVISLK---RPFINLTAGQ--PTSYSLKITASDGKNYASPTTLNITVVK 660
Query: 170 DSHTE 174
D H E
Sbjct: 661 DPHFE 665
>gi|21359974 vitrin [Homo sapiens]
Length = 693
Score = 28.1 bits (61), Expect = 8.4
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 3 PSDQCSAQLGRTQALSYSGQ----WRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGA 58
PS + + R Q++ + Q W T++ S N A QR DP+ A
Sbjct: 205 PSAASTTSIPRPQSVGHRSQEMDLWSTATYTSSQNRPRADPGIQRQ--------DPSGAA 256
Query: 59 RLKPLGFDVGVG-APGWRGG 77
KP+G DV +G W+ G
Sbjct: 257 FQKPVGADVSLGEMDSWKPG 276
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,750,082
Number of Sequences: 37866
Number of extensions: 596092
Number of successful extensions: 1783
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1768
Number of HSP's gapped (non-prelim): 34
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.