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Search of human proteins with 238550212
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|238550212 Z-DNA binding protein 1 isoform d [Homo sapiens]
(248 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|238550212 Z-DNA binding protein 1 isoform d [Homo sapiens] 505 e-143
gi|238550206 Z-DNA binding protein 1 isoform a [Homo sapiens] 454 e-128
gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens] 448 e-126
gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens] 284 6e-77
gi|40353738 c-Mpl binding protein isoform a [Homo sapiens] 33 0.18
gi|40353736 c-Mpl binding protein isoform c [Homo sapiens] 33 0.18
gi|40353740 c-Mpl binding protein isoform b [Homo sapiens] 33 0.18
gi|119120918 coiled-coil domain containing 64 [Homo sapiens] 32 0.39
gi|239744892 PREDICTED: hypothetical protein XP_002344252 [Homo ... 32 0.51
gi|218563739 hypothetical protein LOC124944 isoform 3 [Homo sapi... 32 0.51
gi|218563737 hypothetical protein LOC124944 isoform 1 [Homo sapi... 32 0.51
gi|52856421 hypothetical protein LOC124944 isoform 2 [Homo sapiens] 32 0.51
gi|16418419 Fc receptor-like 1 isoform 1 precursor [Homo sapiens] 31 0.88
gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo sa... 31 0.88
gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo sa... 31 0.88
gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo sa... 31 0.88
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 30 1.5
gi|134133248 FYVE, RhoGEF and PH domain containing 3 [Homo sapiens] 30 1.5
gi|134133265 FYVE, RhoGEF and PH domain containing 3 [Homo sapiens] 30 1.5
gi|105990541 ATP-binding cassette, sub-family A member 4 [Homo s... 30 2.5
gi|6912246 CD3E antigen, epsilon polypeptide associated protein ... 30 2.5
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 30 2.5
gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens] 29 3.3
gi|11386139 phospholipase C beta 3 [Homo sapiens] 29 4.3
gi|7706501 WW domain binding protein 11 [Homo sapiens] 29 4.3
gi|28372505 chromobox homolog 7 [Homo sapiens] 28 5.7
gi|239745087 PREDICTED: similar to Golgin subfamily A member 8-l... 28 5.7
gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens] 28 5.7
gi|210032580 SET domain containing 1B [Homo sapiens] 28 5.7
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 28 7.4
>gi|238550212 Z-DNA binding protein 1 isoform d [Homo sapiens]
Length = 248
Score = 505 bits (1300), Expect = e-143
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL
Sbjct: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
Query: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN 120
TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN
Sbjct: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN 120
Query: 121 GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASII 180
GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASII
Sbjct: 121 GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASII 180
Query: 181 YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGKSPKRAQGGDLGGEPP 240
YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGKSPKRAQGGDLGGEPP
Sbjct: 181 YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGKSPKRAQGGDLGGEPP 240
Query: 241 DPLGGGKG 248
DPLGGGKG
Sbjct: 241 DPLGGGKG 248
>gi|238550206 Z-DNA binding protein 1 isoform a [Homo sapiens]
Length = 429
Score = 454 bits (1169), Expect = e-128
Identities = 225/229 (98%), Positives = 226/229 (98%)
Query: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL
Sbjct: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
Query: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN 120
TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN
Sbjct: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN 120
Query: 121 GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASII 180
GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASII
Sbjct: 121 GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASII 180
Query: 181 YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGKSPKR 229
YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDG + R
Sbjct: 181 YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGSAGPR 229
>gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens]
Length = 428
Score = 448 bits (1152), Expect = e-126
Identities = 224/229 (97%), Positives = 225/229 (98%), Gaps = 1/229 (0%)
Query: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL
Sbjct: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
Query: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN 120
TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN
Sbjct: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN 120
Query: 121 GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASII 180
GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRP DSGRRAKSASII
Sbjct: 121 GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRP-DSGRRAKSASII 179
Query: 181 YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGKSPKR 229
YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDG + R
Sbjct: 180 YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGSAGPR 228
>gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens]
Length = 354
Score = 284 bits (726), Expect = 6e-77
Identities = 139/143 (97%), Positives = 140/143 (97%)
Query: 87 AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR 146
AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR
Sbjct: 12 AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR 71
Query: 147 MKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI 206
MKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI
Sbjct: 72 MKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI 131
Query: 207 QIGHGNIITRQTVSREDGKSPKR 229
QIGHGNIITRQTVSREDG + R
Sbjct: 132 QIGHGNIITRQTVSREDGSAGPR 154
>gi|40353738 c-Mpl binding protein isoform a [Homo sapiens]
Length = 724
Score = 33.5 bits (75), Expect = 0.18
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 38 CQAPKRELNQVLYRMKKELKVSLTSPATWCLGGTDPEGEGPAELALSSPAERPQQHAA-- 95
CQ P +E + VL + +EL+ ++ SP T E G E ++ P E+P+ A+
Sbjct: 623 CQKPPKEPSSVLVQPLRELRSNVVSP-------TKNEDNGAPENSVEKPHEKPEARASKD 675
Query: 96 -------TIPETPGPQFSQQREEDIYRFLKDNGPQR 124
IP + +QR + +R + +R
Sbjct: 676 YSGFRGNIIPRGAAGKIREQRRQFSHRAIPQGVTRR 711
>gi|40353736 c-Mpl binding protein isoform c [Homo sapiens]
Length = 653
Score = 33.5 bits (75), Expect = 0.18
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 38 CQAPKRELNQVLYRMKKELKVSLTSPATWCLGGTDPEGEGPAELALSSPAERPQQHAA-- 95
CQ P +E + VL + +EL+ ++ SP T E G E ++ P E+P+ A+
Sbjct: 552 CQKPPKEPSSVLVQPLRELRSNVVSP-------TKNEDNGAPENSVEKPHEKPEARASKD 604
Query: 96 -------TIPETPGPQFSQQREEDIYRFLKDNGPQR 124
IP + +QR + +R + +R
Sbjct: 605 YSGFRGNIIPRGAAGKIREQRRQFSHRAIPQGVTRR 640
>gi|40353740 c-Mpl binding protein isoform b [Homo sapiens]
Length = 730
Score = 33.5 bits (75), Expect = 0.18
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 38 CQAPKRELNQVLYRMKKELKVSLTSPATWCLGGTDPEGEGPAELALSSPAERPQQHAA-- 95
CQ P +E + VL + +EL+ ++ SP T E G E ++ P E+P+ A+
Sbjct: 629 CQKPPKEPSSVLVQPLRELRSNVVSP-------TKNEDNGAPENSVEKPHEKPEARASKD 681
Query: 96 -------TIPETPGPQFSQQREEDIYRFLKDNGPQR 124
IP + +QR + +R + +R
Sbjct: 682 YSGFRGNIIPRGAAGKIREQRRQFSHRAIPQGVTRR 717
>gi|119120918 coiled-coil domain containing 64 [Homo sapiens]
Length = 573
Score = 32.3 bits (72), Expect = 0.39
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 73 PEGEGPAELAL-------------SSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKD 119
P G G ELAL S P E PQ ++ E GPQ ++ ++ ++
Sbjct: 46 PGGSGELELALEEELALLAAGERPSDPGEHPQAEPGSLAEGAGPQPPPSQDPELLSVIRQ 105
Query: 120 NGPQRALVIAQALGMRTAKDVNRDLYR 146
++ LV+A LG + + N+D+ R
Sbjct: 106 K--EKDLVLAARLG-KALLERNQDMSR 129
>gi|239744892 PREDICTED: hypothetical protein XP_002344252 [Homo
sapiens]
Length = 557
Score = 32.0 bits (71), Expect = 0.51
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 210 HGNIITRQTVSREDGKSPKRAQGGDLGGEPPDPLGGGK 247
HG+ +R + R G +P R G G+ P PLGG +
Sbjct: 377 HGDAPSRLSGDRTHGDAPSRLSGDRTHGDAPSPLGGDR 414
Score = 32.0 bits (71), Expect = 0.51
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 210 HGNIITRQTVSREDGKSPKRAQGGDLGGEPPDPLGGGK 247
HG+ ++R + R G +P G G+ P PLGG +
Sbjct: 416 HGDALSRLSGDRTHGDAPSHLSGDRTHGDAPSPLGGDR 453
Score = 28.5 bits (62), Expect = 5.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 210 HGNIITRQTVSREDGKSPKRAQGGDLGGEPPDPLGGGK 247
HG+ ++R + R+ G +P G G+ P PL G +
Sbjct: 481 HGDPLSRLSRDRKHGDAPSPLSGDCTHGDAPSPLSGDR 518
Score = 28.1 bits (61), Expect = 7.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 210 HGNIITRQTVSREDGKSPKRAQGGDLGGEPPDPLGGGK 247
HG+ +R R G++P R G G+ P LGG +
Sbjct: 247 HGDAPSRLGGDRTHGEAPSRLSGDRTHGDAPSRLGGDR 284
Score = 28.1 bits (61), Expect = 7.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 210 HGNIITRQTVSREDGKSPKRAQGGDLGGEPPDPLGGGK 247
HG+ +R R G++P R G G+ P LGG +
Sbjct: 312 HGDAPSRLGGDRTHGEAPSRLSGDRTHGDAPSRLGGDR 349
>gi|218563739 hypothetical protein LOC124944 isoform 3 [Homo
sapiens]
Length = 138
Score = 32.0 bits (71), Expect = 0.51
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 17 RILQVLTEAGSP-VKLAQLVKECQAPKRELNQVLYRMKKELKVSLTSPATWCLGGTDPEG 75
++ ++ + AG+ KL +L + P + + ++K +K + + L P+
Sbjct: 7 KVGEIFSAAGAAFTKLGELTMQLH-PVADSSPAGAQIKATVKRKVYEDSGIPLPAESPK- 64
Query: 76 EGPAELA---LSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQAL 132
+GP ++A LS P P ++++PE GP +Q+ + L D+ +V + L
Sbjct: 65 KGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEGL 124
Query: 133 G-MRTAKDVNRD 143
G AK +N D
Sbjct: 125 GETPPAKKLNFD 136
>gi|218563737 hypothetical protein LOC124944 isoform 1 [Homo
sapiens]
Length = 192
Score = 32.0 bits (71), Expect = 0.51
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 38 CQAPKRELNQVLYRMKKELKVSLTSPATWCLGGTDPEGEGPAELA---LSSPAERPQQHA 94
C +R + Q+ +K+++ P L P+ +GP ++A LS P P +
Sbjct: 66 CVIKERTVAQIKATVKRKVYEDSGIP----LPAESPK-KGPKKVASGVLSPPPAAPPPSS 120
Query: 95 ATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALG-MRTAKDVNRD 143
+++PE GP +Q+ + L D+ +V + LG AK +N D
Sbjct: 121 SSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEGLGETPPAKKLNFD 170
>gi|52856421 hypothetical protein LOC124944 isoform 2 [Homo sapiens]
Length = 172
Score = 32.0 bits (71), Expect = 0.51
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 38 CQAPKRELNQVLYRMKKELKVSLTSPATWCLGGTDPEGEGPAELA---LSSPAERPQQHA 94
C +R + Q+ +K+++ P L P+ +GP ++A LS P P +
Sbjct: 66 CVIKERTVAQIKATVKRKVYEDSGIP----LPAESPK-KGPKKVASGVLSPPPAAPPPSS 120
Query: 95 ATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALG-MRTAKDVNRD 143
+++PE GP +Q+ + L D+ +V + LG AK +N D
Sbjct: 121 SSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEGLGETPPAKKLNFD 170
>gi|16418419 Fc receptor-like 1 isoform 1 precursor [Homo sapiens]
Length = 429
Score = 31.2 bits (69), Expect = 0.88
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 58 VSLTSPAT----WCLGGTDPEGEGPAELALSS-PAERPQQHAATIPETPGP------QFS 106
+S PAT +C G G A L S P+ PQ+ TPG +
Sbjct: 314 LSTLGPATVALLFCYGLKRKIGRRSARDPLRSLPSPLPQEFTYLNSPTPGQLQPIYENVN 373
Query: 107 QQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLY-RMKSRHLLDMD 156
+++Y N P++ V A+ LG V+ D+Y R++ ++ D+D
Sbjct: 374 VVSGDEVYSLAYYNQPEQESVAAETLGTHMEDKVSLDIYSRLRKANITDVD 424
>gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo
sapiens]
Length = 1181
Score = 31.2 bits (69), Expect = 0.88
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 15 EQRILQVLTEAGS--PVKLAQLVKECQAPKRELNQVLYRMKK--ELKVSLTSPATW 66
EQRIL+ L E G L + PK+E+N+VLY + K +L+ +P W
Sbjct: 140 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 195
>gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo
sapiens]
Length = 1200
Score = 31.2 bits (69), Expect = 0.88
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 15 EQRILQVLTEAGS--PVKLAQLVKECQAPKRELNQVLYRMKK--ELKVSLTSPATW 66
EQRIL+ L E G L + PK+E+N+VLY + K +L+ +P W
Sbjct: 140 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 195
>gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo
sapiens]
Length = 1226
Score = 31.2 bits (69), Expect = 0.88
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 15 EQRILQVLTEAGS--PVKLAQLVKECQAPKRELNQVLYRMKK--ELKVSLTSPATW 66
EQRIL+ L E G L + PK+E+N+VLY + K +L+ +P W
Sbjct: 140 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 195
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 30.4 bits (67), Expect = 1.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQ 108
+SP LG + E EGPAE P++H+ I +PGP+ +Q
Sbjct: 1198 SSPPPASLGRPEGEEEGPAE---------PEEHSVRICMSPGPEPGEQ 1236
>gi|134133248 FYVE, RhoGEF and PH domain containing 3 [Homo sapiens]
Length = 725
Score = 30.4 bits (67), Expect = 1.5
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 79 AELALSS--PAERPQQHA-ATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMR 135
AE+AL S P PQ+ A + + E P + + Q+ + + +GPQ+ L IAQ L
Sbjct: 109 AEMALDSQVPKVTPQEEADSDVGEEPDSENTPQKADKDAGLAQHSGPQKLLHIAQEL--- 165
Query: 136 TAKDVNRDLYRMKSRHLLD 154
++ + +K HLLD
Sbjct: 166 ----LHTEETYVKRLHLLD 180
>gi|134133265 FYVE, RhoGEF and PH domain containing 3 [Homo sapiens]
Length = 725
Score = 30.4 bits (67), Expect = 1.5
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 79 AELALSS--PAERPQQHA-ATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMR 135
AE+AL S P PQ+ A + + E P + + Q+ + + +GPQ+ L IAQ L
Sbjct: 109 AEMALDSQVPKVTPQEEADSDVGEEPDSENTPQKADKDAGLAQHSGPQKLLHIAQEL--- 165
Query: 136 TAKDVNRDLYRMKSRHLLD 154
++ + +K HLLD
Sbjct: 166 ----LHTEETYVKRLHLLD 180
>gi|105990541 ATP-binding cassette, sub-family A member 4 [Homo
sapiens]
Length = 2273
Score = 29.6 bits (65), Expect = 2.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 62 SPATWCLGGTDPEGEGPAELALSSP---AERPQQHAATIPETPGPQFS 106
+P CLG + G+ P + + SP A P+ PE PGPQ +
Sbjct: 1298 NPRHPCLGPREKAGQTPQDSNVCSPGAPAAHPEGQPPPEPECPGPQLN 1345
>gi|6912246 CD3E antigen, epsilon polypeptide associated protein
[Homo sapiens]
Length = 510
Score = 29.6 bits (65), Expect = 2.5
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 25/113 (22%)
Query: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
+ QAPAD E + + P+ +Q+VK A KR +VL + + +L
Sbjct: 44 LIQAPADFAPECFNGRHV---------PLSGSQIVKGKLAGKRHRYRVLSSCPQAGEATL 94
Query: 61 TSPATWCLGG----TDPEG-----EGPAELALSSPAERPQQHAATIPETPGPQ 104
+P+T GG + P+G EGP + SP + IP +P PQ
Sbjct: 95 LAPSTEAGGGLTCASAPQGTLRILEGPQQSLSGSPLQ-------PIPASPPPQ 140
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 29.6 bits (65), Expect = 2.5
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 27 SPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTSPATWCLGGTDPEGEGPAELALSSP 86
+P ++ QLV E A L+ + ++ ++ L G DPEG G E P
Sbjct: 601 APSEVPQLVSETWASP------LFPAPRPFPAQSSASGSFLLSGWDPEGRGAGETLAGDP 654
Query: 87 AE 88
AE
Sbjct: 655 AE 656
>gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens]
Length = 858
Score = 29.3 bits (64), Expect = 3.3
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 2 AQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVK--ECQAPKRELNQVLYRMKKELKVS 59
AQA A G LE+RI A S + + K C+ + L L +++ K++
Sbjct: 158 AQAGASQGLHALLEERIHNYREAAASAKEAGEAAKARRCERGLKTLESQLASVRRGRKIN 217
Query: 60 LTSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGP 103
E E P +AL PQ+ A PET P
Sbjct: 218 --------------EDEIPPPVALGKRPLAPQEPANRSPETDPP 247
>gi|11386139 phospholipase C beta 3 [Homo sapiens]
Length = 1234
Score = 28.9 bits (63), Expect = 4.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 15 EQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYR 51
+Q++LQ L E P LAQL +ECQ + L Q + R
Sbjct: 1154 QQQVLQQLAEE-EPKLLAQLAQECQEQRARLPQEIRR 1189
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 28.9 bits (63), Expect = 4.3
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 107 QQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRM 147
Q R+E R LK N QR +V A L M+ K + RD+ ++
Sbjct: 20 QARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKL 60
>gi|28372505 chromobox homolog 7 [Homo sapiens]
Length = 251
Score = 28.5 bits (62), Expect = 5.7
Identities = 25/111 (22%), Positives = 36/111 (32%)
Query: 14 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTSPATWCLGGTDP 73
L+ R++ E + + K PKR L Q LY M C T P
Sbjct: 49 LDPRLVMAYEEKEERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCP 108
Query: 74 EGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQR 124
G G E + + A +P P P ++ R + P R
Sbjct: 109 LGSGSPEGVVKAGAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPR 159
>gi|239745087 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 1 [Homo sapiens]
Length = 547
Score = 28.5 bits (62), Expect = 5.7
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 71 TDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQ---------QREEDIYRFLKD-- 119
T GE P A E P Q A +P++ + SQ Q+++ + L++
Sbjct: 71 TGIHGESPTSSATLKDLESPCQELAVVPDSRSVKVSQLKNTIKSLKQQKKQVVHQLEEEK 130
Query: 120 ---NGPQRA----LVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSK 160
N Q+A V Q L ++ K +N DLY K R L +E+SK
Sbjct: 131 KANNEKQKAERELEVQIQRLNIQKGK-LNTDLYHTK-RSLRYFEEESK 176
>gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens]
Length = 1537
Score = 28.5 bits (62), Expect = 5.7
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 21 VLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTSPATWCLGGTDPEGE--GP 78
+L S +K +L +E +A +R R ++E K + +P PEG+ GP
Sbjct: 321 ILENYFSSLKNPKLREEQEAARR-------RQQRESKSNAATPTK------GPEGKVAGP 367
Query: 79 AELALSSPAERPQQHAATIPETPGPQFSQQRE 110
A+ + S AE + AAT+ + P P +++++
Sbjct: 368 ADAPMDSGAEEEKAGAATV-KKPSPSKARKKK 398
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 28.5 bits (62), Expect = 5.7
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 61 TSPATWCLGGTDPEGEGPAELALSSP----------AERPQQHAATIPETPGPQFS 106
T PAT GG P G + L+LSSP A P + +P TPG FS
Sbjct: 1335 TVPAT--PGGEPPLSGGSSGLSLSSPQVPGSPFSYPAPSPSLSSGGLPRTPGRDFS 1388
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 28.1 bits (61), Expect = 7.4
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 40 APKRELNQV-LYRMK--KELKVSLTSPAT--WCLGGTDPEGEGPAELALSSP-----AER 89
+P R+++ V L R + +E+K P W P A L+ SSP A+R
Sbjct: 57 SPARQVHLVWLLRSRGFREIKERAQGPGASPWGRWDWSPSPRFAARLSTSSPFPQGRAQR 116
Query: 90 PQQHAATIPETPG 102
PQ+ +P TPG
Sbjct: 117 PQRGGVDLPATPG 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,660,899
Number of Sequences: 37866
Number of extensions: 583915
Number of successful extensions: 1784
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1743
Number of HSP's gapped (non-prelim): 68
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.