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Search of human proteins with 238550149
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens] 519 e-148
gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 510 e-145
gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 510 e-145
gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens] 506 e-143
gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens] 414 e-116
gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens] 414 e-116
gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo ... 32 0.41
gi|31657103 WD repeat domain 23 isoform 1 [Homo sapiens] 32 0.54
gi|7019503 prolactin regulatory element binding protein [Homo sa... 31 1.2
gi|9945318 MAX binding protein [Homo sapiens] 29 3.5
gi|27735155 poly(A)-specific ribonuclease (PARN)-like domain con... 29 3.5
gi|18201913 forkhead box N1 [Homo sapiens] 29 3.5
gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens] 29 4.6
gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens] 29 4.6
gi|115495445 ankyrin repeat domain 30A [Homo sapiens] 28 5.9
gi|239755140 PREDICTED: hypothetical protein [Homo sapiens] 28 5.9
gi|239749633 PREDICTED: hypothetical protein [Homo sapiens] 28 5.9
gi|239743908 PREDICTED: hypothetical protein XP_002342989 [Homo ... 28 5.9
gi|32483374 nucleolar protein 5A [Homo sapiens] 28 5.9
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 28 7.8
gi|113865921 hypothetical protein LOC441457 [Homo sapiens] 28 7.8
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 28 7.8
>gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens]
Length = 255
Score = 519 bits (1337), Expect = e-148
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPKLELMPL 120
LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPKLELMPL
Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPKLELMPL 120
Query: 121 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 180
ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF
Sbjct: 121 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 180
Query: 181 IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ 240
IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ
Sbjct: 181 IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ 240
Query: 241 SSPKHSSRERRRIQQ 255
SSPKHSSRERRRIQQ
Sbjct: 241 SSPKHSSRERRRIQQ 255
>gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
Length = 253
Score = 510 bits (1314), Expect = e-145
Identities = 253/255 (99%), Positives = 253/255 (99%), Gaps = 2/255 (0%)
Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPKLELMPL 120
LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQV PKLELMPL
Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQV--PKLELMPL 118
Query: 121 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 180
ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF
Sbjct: 119 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 178
Query: 181 IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ 240
IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ
Sbjct: 179 IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ 238
Query: 241 SSPKHSSRERRRIQQ 255
SSPKHSSRERRRIQQ
Sbjct: 239 SSPKHSSRERRRIQQ 253
>gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
Length = 253
Score = 510 bits (1314), Expect = e-145
Identities = 253/255 (99%), Positives = 253/255 (99%), Gaps = 2/255 (0%)
Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPKLELMPL 120
LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQV PKLELMPL
Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQV--PKLELMPL 118
Query: 121 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 180
ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF
Sbjct: 119 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 178
Query: 181 IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ 240
IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ
Sbjct: 179 IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ 238
Query: 241 SSPKHSSRERRRIQQ 255
SSPKHSSRERRRIQQ
Sbjct: 239 SSPKHSSRERRRIQQ 253
>gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens]
Length = 254
Score = 506 bits (1302), Expect = e-143
Identities = 253/256 (98%), Positives = 253/256 (98%), Gaps = 3/256 (1%)
Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPKLELMPL 120
LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ VPKLELMPL
Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ--VPKLELMPL 118
Query: 121 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 180
ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF
Sbjct: 119 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 178
Query: 181 IDGPLAL-ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETEC 239
IDGPLAL ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETEC
Sbjct: 179 IDGPLALAADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETEC 238
Query: 240 QSSPKHSSRERRRIQQ 255
QSSPKHSSRERRRIQQ
Sbjct: 239 QSSPKHSSRERRRIQQ 254
>gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens]
Length = 216
Score = 414 bits (1064), Expect = e-116
Identities = 215/255 (84%), Positives = 215/255 (84%), Gaps = 39/255 (15%)
Query: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT
Sbjct: 1 MNFSGGGRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLGT 60
Query: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPKLELMPL 120
LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ VPKLELMPL
Sbjct: 61 LLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ--VPKLELMPL 118
Query: 121 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 180
ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF
Sbjct: 119 ETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 178
Query: 181 IDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSLAGDEETECQ 240
IDGPLALA KPLSLAGDEETECQ
Sbjct: 179 IDGPLALAG-------------------------------------KPLSLAGDEETECQ 201
Query: 241 SSPKHSSRERRRIQQ 255
SSPKHSSRERRRIQQ
Sbjct: 202 SSPKHSSRERRRIQQ 216
>gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens]
Length = 204
Score = 414 bits (1064), Expect = e-116
Identities = 204/206 (99%), Positives = 204/206 (99%), Gaps = 2/206 (0%)
Query: 50 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 109
MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ
Sbjct: 1 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60
Query: 110 VGVPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIIS 169
V PKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIIS
Sbjct: 61 V--PKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIIS 118
Query: 170 GMRSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPL 229
GMRSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPL
Sbjct: 119 GMRSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPL 178
Query: 230 SLAGDEETECQSSPKHSSRERRRIQQ 255
SLAGDEETECQSSPKHSSRERRRIQQ
Sbjct: 179 SLAGDEETECQSSPKHSSRERRRIQQ 204
>gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo
sapiens]
Length = 271
Score = 32.3 bits (72), Expect = 0.41
Identities = 44/168 (26%), Positives = 59/168 (35%), Gaps = 31/168 (18%)
Query: 7 GRQEAAGSRGRRAPRPREQDRDVQLSKALSYALRH-------GALKLGLPMGADGFVPLG 59
G Q + SR RRA RPR S+ + R G+L L LP G+ G
Sbjct: 107 GPQSISRSRPRRAVRPRPGPWPAAPSRGPVRSCRGPRPGRALGSLPLVLPAGSCGSCQED 166
Query: 60 TLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPKLELMP 119
+L N+ + AL++G GL A + P+ P
Sbjct: 167 SL-------------------GNQARPSALEIGASGVGLGSPAPSNRRNRYAPPE---SP 204
Query: 120 LETPQALPPMLVHGTFWKHWPSILLKGL--SCQGRTHIHLAPGLPGDP 165
+P A PP TF P+ K L C G + L P G P
Sbjct: 205 KGSPSAKPPRACSDTFSARQPASTPKALPGGCPGDPELGLPPKRAGAP 252
>gi|31657103 WD repeat domain 23 isoform 1 [Homo sapiens]
Length = 546
Score = 32.0 bits (71), Expect = 0.54
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 13 GSRGRRAPRPREQDRDVQLSKALSYALRHGALKL 46
G+ RR+ E+D DV L++ L+Y LR G ++L
Sbjct: 24 GAGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRL 57
>gi|7019503 prolactin regulatory element binding protein [Homo
sapiens]
Length = 417
Score = 30.8 bits (68), Expect = 1.2
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 17/95 (17%)
Query: 87 FALQLGDPSTGLLIRANQGHSLQVGVPK-LELMPLETPQALPPMLVHGTFWKHWPSILLK 145
+ALQ+ DPSTGLLI A G + + G+ + + LE L++G + LL
Sbjct: 17 YALQV-DPSTGLLIAAGGGGAAKTGIKNGVHFLQLE--------LINGRL----SASLLH 63
Query: 146 GLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVF 180
+ R ++LA L GD + +G +HC++ F
Sbjct: 64 SHDTETRATMNLA--LAGDI-LAAGQDAHCQLLRF 95
>gi|9945318 MAX binding protein [Homo sapiens]
Length = 582
Score = 29.3 bits (64), Expect = 3.5
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 60 TLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPKLELMP 119
TLL+ +F + A+ QR + + R + A H+L V P++E P
Sbjct: 5 TLLEAARFLEWQAQQQQRAREEQERLRLEQEREQEQKKANSLARLAHTLPVEEPRMEAPP 64
Query: 120 LE-TPQALPP 128
L +P A PP
Sbjct: 65 LPLSPPAPPP 74
>gi|27735155 poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Homo sapiens]
Length = 520
Score = 29.3 bits (64), Expect = 3.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 103 NQGHSLQVGVPKLELMPLETPQALPPMLVHGTFWKHWPSI 142
NQ + ++ GVPK+ + P PP+L+ K WP +
Sbjct: 396 NQVNLIRAGVPKINFSGPDYPSIRPPILILSV--KRWPGV 433
>gi|18201913 forkhead box N1 [Homo sapiens]
Length = 648
Score = 29.3 bits (64), Expect = 3.5
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Query: 148 SCQGRTHIHLAPGL--PGDP 165
SC G+T++HL+PGL PG P
Sbjct: 449 SCYGQTYLHLSPGLAPPGPP 468
>gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens]
Length = 869
Score = 28.9 bits (63), Expect = 4.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 135 FWKHWPSILLKGLSCQ-GRTHIHLAPGLPGDPGIISGMRSHC 175
F K W LL+ + + G T I L+P LPG+ I S + C
Sbjct: 321 FGKQWQPTLLQAMQVEKGATGISLSPHLPGELAICSRSGAVC 362
>gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens]
Length = 775
Score = 28.9 bits (63), Expect = 4.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 135 FWKHWPSILLKGLSCQ-GRTHIHLAPGLPGDPGIISGMRSHC 175
F K W LL+ + + G T I L+P LPG+ I S + C
Sbjct: 228 FGKQWQPTLLQAMQVEKGATGISLSPHLPGELAICSRSGAVC 269
>gi|115495445 ankyrin repeat domain 30A [Homo sapiens]
Length = 1341
Score = 28.5 bits (62), Expect = 5.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 92 GDPSTGLLIRANQGHSLQVGVPKLELMPLETPQALPP 128
G P L++AN G + + LELM ++T +A PP
Sbjct: 663 GSPVKDGLLKANCGMKVSIPTKALELMDMQTFKAEPP 699
>gi|239755140 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 28.5 bits (62), Expect = 5.9
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 55 FVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPK 114
F PL LL+L Q S ++ D+ + + L+ + GHS + P
Sbjct: 19 FYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLE----------GRSIGHSSLLWAP- 67
Query: 115 LELMPLETPQALPPMLVHGTFWKHWPS 141
MP E P+ L P+ FW H P+
Sbjct: 68 ---MPAEPPERLLPLAGGSFFWPHPPN 91
>gi|239749633 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 28.5 bits (62), Expect = 5.9
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 55 FVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPK 114
F PL LL+L Q S ++ D+ + + L+ + GHS + P
Sbjct: 19 FYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLE----------GRSIGHSSLLWAP- 67
Query: 115 LELMPLETPQALPPMLVHGTFWKHWPS 141
MP E P+ L P+ FW H P+
Sbjct: 68 ---MPAEPPERLLPLAGGSFFWPHPPN 91
>gi|239743908 PREDICTED: hypothetical protein XP_002342989 [Homo
sapiens]
Length = 111
Score = 28.5 bits (62), Expect = 5.9
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 55 FVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVGVPK 114
F PL LL+L Q S ++ D+ + + L+ + GHS + P
Sbjct: 19 FYPLDQLLRLGQTIFLSVCHARKSSDSKTQSQAHLE----------GRSIGHSSLLWAP- 67
Query: 115 LELMPLETPQALPPMLVHGTFWKHWPS 141
MP E P+ L P+ FW H P+
Sbjct: 68 ---MPAEPPERLLPLAGGSFFWPHPPN 91
>gi|32483374 nucleolar protein 5A [Homo sapiens]
Length = 594
Score = 28.5 bits (62), Expect = 5.9
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 69 GFSAEDVQRVVDTN---RKQRFALQLGDPSTGLLIRANQGHSLQVG 111
G ED++ +++T+ +K++ L +GDP G I+ G++ Q G
Sbjct: 70 GVVHEDLRLLLETHLPSKKKKVLLGVGDPKIGAAIQEELGYNCQTG 115
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 28.1 bits (61), Expect = 7.8
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 122 TPQALPPMLVHGTFWKHWPSILLKGLSC-QGRTHIHLAPGLPGDPGIISG 170
TP + P L GT +P + + GL H H++PGL G ++ G
Sbjct: 1120 TPPSTDPGLTGGTV-SQFPPLYMPGLEYPNSAAHYHISPGLQGVGPVMGG 1168
>gi|113865921 hypothetical protein LOC441457 [Homo sapiens]
Length = 492
Score = 28.1 bits (61), Expect = 7.8
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 114 KLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRS 173
+ E+ P++ PQA +L P L G+ C + APG+P + G
Sbjct: 86 RTEVGPVKPPQAQTLILTQAPLVWQAPGTLCGGVMCPPPLLLAAAPGVPVTSAQVVGGTQ 145
Query: 174 HCE 176
CE
Sbjct: 146 ACE 148
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 28.1 bits (61), Expect = 7.8
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 114 KLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRS 173
+ E+ P++ PQA +L P L G+ C + APG+P + G
Sbjct: 86 RTEVGPVKPPQAQTLILTQAPLVWQAPGTLCGGVMCPPPLLLAAAPGVPVTSAQVVGGTQ 145
Query: 174 HCE 176
CE
Sbjct: 146 ACE 148
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,298,860
Number of Sequences: 37866
Number of extensions: 579730
Number of successful extensions: 1723
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1702
Number of HSP's gapped (non-prelim): 27
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.