Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TRPT1 Sequence: fasta or formatted (253aa) NCBI GI: 238550153
Description:

tRNA phosphotransferase 1 isoform 1

Referenced in:

tRNA Enzymes

Other entries for this name:
alt prot [204aa] tRNA phosphotransferase 1 isoform 2
alt prot [255aa] tRNA phosphotransferase 1 isoform 3
alt mRNA [253aa] tRNA phosphotransferase 1 isoform 1
alt prot [216aa] tRNA phosphotransferase 1 isoform 4
alt prot [254aa] tRNA phosphotransferase 1 isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         18           2
 C cysteine            1.2          3           1
 D aspartate           4.3         11           1
 E glutamate           4.3         11           2
 F phenylalanine       4.3         11           2
 G glycine            10.7         27           3
 H histidine           3.2          8           1
 I isoleucine          4.0         10           2
 K lysine              4.0         10           1
 L leucine            13.4         34           2
 M methionine          2.0          5           1
 N asparagine          2.0          5           1
 P proline             8.7         22           2
 Q glutamine           6.3         16           2
 R arginine            8.7         22           3
 S serine              6.7         17           2
 T threonine           4.0         10           1
 V valine              3.6          9           2
 W tryptophan          0.8          2           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tRNA phosphotransferase 1 isoform 1 
TRPT1                 1.000   tRNA phosphotransferase 1 isoform 1 
TRPT1                 0.992   tRNA phosphotransferase 1 isoform 5 
TRPT1                 0.990   tRNA phosphotransferase 1 isoform 3 
TRPT1                 0.804   tRNA phosphotransferase 1 isoform 4 
TRPT1                 0.804   tRNA phosphotransferase 1 isoform 2 
WDR23                 0.014   WD repeat domain 23 isoform 1 
LOC100292088          0.012   PREDICTED: hypothetical protein XP_002346321 
FOXN1                 0.008   forkhead box N1 
TAF1C                 0.008   TBP-associated factor 1C isoform 1 
TAF1C                 0.008   TBP-associated factor 1C isoform 2 
CECR2                 0.006   cat eye syndrome chromosome region, candidate 2 [Ho...
FAM22G                0.006   hypothetical protein LOC441457 
FAM22F                0.006   hypothetical protein LOC54754 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press