Guide to the Human Genome
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Name: LOC100288086 Sequence: fasta or formatted (111aa) NCBI GI: 239749633
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {111aa} PREDICTED: hypothetical protein XP_002342989
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2          8           1
 C cysteine            0.9          1           1
 D aspartate           1.8          2           1
 E glutamate           5.4          6           2
 F phenylalanine       3.6          4           2
 G glycine             9.0         10           2
 H histidine           4.5          5           1
 I isoleucine          2.7          3           1
 K lysine              3.6          4           1
 L leucine            17.1         19           2
 M methionine          1.8          2           1
 N asparagine          0.9          1           1
 P proline            10.8         12           2
 Q glutamine           3.6          4           1
 R arginine            4.5          5           1
 S serine             14.4         16           2
 T threonine           2.7          3           1
 V valine              1.8          2           1
 W tryptophan          1.8          2           1
 Y tyrosine            1.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292500          1.000   PREDICTED: hypothetical protein 
LOC100288086          1.000   PREDICTED: hypothetical protein XP_002342989 
TRPT1                 0.015   tRNA phosphotransferase 1 isoform 3 
BOK                   0.015   BCL2-related ovarian killer 
ZBTB39                0.010   zinc finger and BTB domain containing 39 
SLC43A3               0.010   solute carrier family 43, member 3 
SLC43A3               0.010   solute carrier family 43, member 3 
SLC43A3               0.010   solute carrier family 43, member 3 
FZD9                  0.010   frizzled 9 
SMR3A                 0.010   submaxillary gland androgen regulated protein 3 homo...
LMTK3                 0.010   lemur tyrosine kinase 3 
CKMT1B                0.010   creatine kinase, mitochondrial 1B precursor 
CKMT1A                0.010   creatine kinase, mitochondrial 1A precursor 
C5orf32               0.010   hypothetical protein LOC84418 
TRPT1                 0.005   tRNA phosphotransferase 1 isoform 5 
TRPT1                 0.005   tRNA phosphotransferase 1 isoform 4 
TRPT1                 0.005   tRNA phosphotransferase 1 isoform 2 
TRPT1                 0.005   tRNA phosphotransferase 1 isoform 1 
TRPT1                 0.005   tRNA phosphotransferase 1 isoform 1 
EXTL1                 0.005   exostoses-like 1 
PRAGMIN               0.005   pragmin 
TMEM91                0.005   transmembrane protein 91 isoform a 
TMEM91                0.005   transmembrane protein 91 isoform b 
TMEM91                0.005   transmembrane protein 91 isoform d 
TMEM91                0.005   transmembrane protein 91 isoform c 
TMEM91                0.005   transmembrane protein 91 isoform c 
TMEM91                0.005   transmembrane protein 91 isoform e 
ADRB1                 0.005   beta-1-adrenergic receptor 
LOC100291645          0.005   PREDICTED: hypothetical protein XP_002344930 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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