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Search of human proteins with 23821044
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23821044 zinc finger/RING finger 2 [Homo sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23821044 zinc finger/RING finger 2 [Homo sapiens] 499 e-141
gi|14150005 zinc and ring finger protein 1 [Homo sapiens] 195 3e-50
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 57 1e-08
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 57 1e-08
gi|37595553 ring finger protein 111 [Homo sapiens] 54 1e-07
gi|12707580 paired-like homeobox 2b [Homo sapiens] 54 2e-07
gi|57165361 ring finger protein 165 [Homo sapiens] 53 2e-07
gi|24233572 zinc finger protein 367 [Homo sapiens] 52 6e-07
gi|29788758 ring finger protein 130 [Homo sapiens] 52 6e-07
gi|29789407 ring finger protein 149 [Homo sapiens] 51 8e-07
gi|7657520 ring finger protein 11 [Homo sapiens] 50 2e-06
gi|150170725 zinc and ring finger 4 [Homo sapiens] 50 2e-06
gi|33946327 nucleoporin 214kDa [Homo sapiens] 49 3e-06
gi|153792074 proline rich 12 [Homo sapiens] 49 3e-06
gi|56711322 ring finger protein 43 [Homo sapiens] 49 4e-06
gi|58331204 ring finger protein 150 [Homo sapiens] 49 4e-06
gi|239749332 PREDICTED: hypothetical protein XP_002347002 [Homo ... 49 5e-06
gi|239743424 PREDICTED: hypothetical protein XP_002342853 [Homo ... 49 5e-06
gi|14149702 ring finger protein 167 [Homo sapiens] 48 9e-06
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 48 9e-06
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 48 9e-06
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 48 9e-06
gi|38045931 ring finger protein 122 [Homo sapiens] 47 1e-05
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 47 2e-05
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 47 2e-05
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 47 2e-05
gi|12751477 forkhead box L2 [Homo sapiens] 46 3e-05
gi|37588873 ring finger protein 128 isoform 1 [Homo sapiens] 46 3e-05
gi|37588871 ring finger protein 128 isoform 2 [Homo sapiens] 46 3e-05
gi|5174653 ring finger protein 6 [Homo sapiens] 46 3e-05
>gi|23821044 zinc finger/RING finger 2 [Homo sapiens]
Length = 242
Score = 499 bits (1284), Expect = e-141
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MGAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS 60
MGAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS
Sbjct: 1 MGAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS 60
Query: 61 ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS 120
ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS
Sbjct: 61 ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS 120
Query: 121 PEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGGFKCPVCSKFVSSDEMDLHLVMCL 180
PEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGGFKCPVCSKFVSSDEMDLHLVMCL
Sbjct: 121 PEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGGFKCPVCSKFVSSDEMDLHLVMCL 180
Query: 181 TKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCPEHP 240
TKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCPEHP
Sbjct: 181 TKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCPEHP 240
Query: 241 SD 242
SD
Sbjct: 241 SD 242
>gi|14150005 zinc and ring finger protein 1 [Homo sapiens]
Length = 227
Score = 195 bits (495), Expect = 3e-50
Identities = 111/247 (44%), Positives = 137/247 (55%), Gaps = 25/247 (10%)
Query: 1 MGAKQSGPAAANGRTRAYSGSDLPSSSSGGAN--GTAGGGGGARAAAAGRFPAQVPSAHQ 58
MG KQS A + G S D GGA G GGGA + +
Sbjct: 1 MGGKQSTAARSRGPFPGVSTDDSAVPPPGGAPHFGHYRTGGGAMGLRSRSVSSVAGMGMD 60
Query: 59 PSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVH 118
PS +GG P P SR G + + G A+ S ++ N G Q++
Sbjct: 61 PSTAGGV------PFGLYTPASRGTGDSERAPGGGGSASDSTYAHGN------GYQET-- 106
Query: 119 SSPEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFG---GFKCPVCSKFVSSDEMDLH 175
GGG R G + +LP H++P F GFKCP+CSK V+SDEM++H
Sbjct: 107 ------GGGHHRDGMLYLGSRASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEMH 160
Query: 176 LVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRS 235
+MCL+KPR++YN+DVL+KDAGEC ICLEEL QGDTIARLPCLCIYHK CID WFEVNRS
Sbjct: 161 FIMCLSKPRLSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRS 220
Query: 236 CPEHPSD 242
CPEHP+D
Sbjct: 221 CPEHPAD 227
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 57.4 bits (137), Expect = 1e-08
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 79 RSRSLGGAVGSVASGARAAQSPFSIPNSSSGPY---GSQDSVHSSPEDGGGGRDRPVGGS 135
R S GG+ +S + ++ S S +SSS P G + S SS G GS
Sbjct: 446 RGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSSGS 505
Query: 136 PGGPRLVIGSLPAHLSPHMF---GGFKCPVCSKFVSSDEMDLHLVMCLTKPRITYNEDVL 192
G R H +P F G ++F +E D LTK +I +++
Sbjct: 506 SGARRE-----GRHRAPVTFDESGSLPFLSLAQFFLLNEDDDDQPRGLTKEQI---DNLA 557
Query: 193 SKDAGE------CAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCP 237
+ GE C++C+ E +G+ + +LPC YH CID W N +CP
Sbjct: 558 MRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCP 608
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 57.4 bits (137), Expect = 1e-08
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 79 RSRSLGGAVGSVASGARAAQSPFSIPNSSSGPY---GSQDSVHSSPEDGGGGRDRPVGGS 135
R S GG+ +S + ++ S S +SSS P G + S SS G GS
Sbjct: 446 RGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSSGS 505
Query: 136 PGGPRLVIGSLPAHLSPHMF---GGFKCPVCSKFVSSDEMDLHLVMCLTKPRITYNEDVL 192
G R H +P F G ++F +E D LTK +I +++
Sbjct: 506 SGARRE-----GRHRAPVTFDESGSLPFLSLAQFFLLNEDDDDQPRGLTKEQI---DNLA 557
Query: 193 SKDAGE------CAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCP 237
+ GE C++C+ E +G+ + +LPC YH CID W N +CP
Sbjct: 558 MRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCP 608
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 53.9 bits (128), Expect = 1e-07
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 198 ECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCP 237
+C ICL L++G+ + RLPC+ ++H+ C+D+W N+ CP
Sbjct: 933 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCP 972
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 53.5 bits (127), Expect = 2e-07
Identities = 42/114 (36%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 3 AKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSAS 62
AK + P + G G + + S GANG GGGGG A A +P
Sbjct: 187 AKSTDPDSTGG-----PGPNPNPTPSCGANG--GGGGGPSPAGAPGAAGPGGPGGEPGKG 239
Query: 63 GGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSP---FSIPNSSSGPYGS 113
G AAAAAAA AA AA + + GG + G A P SIP+S GP+ S
Sbjct: 240 GAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGPFAS 293
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 70 AAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSSPEDGGGGRD 129
AA AA AA ++ S G S + + ++ + P+S+ GP + + S +GGGG
Sbjct: 159 AAAAAAAAAKNGSSGKKSDS-SRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGG 217
Query: 130 RPVGGSPG 137
G+PG
Sbjct: 218 PSPAGAPG 225
>gi|57165361 ring finger protein 165 [Homo sapiens]
Length = 346
Score = 53.1 bits (126), Expect = 2e-07
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 7/51 (13%)
Query: 194 KDAGE-------CAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCP 237
KD GE C ICL L+ G+ + RLPC+ ++H+ C+D+W +++ CP
Sbjct: 282 KDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCP 332
>gi|24233572 zinc finger protein 367 [Homo sapiens]
Length = 350
Score = 51.6 bits (122), Expect = 6e-07
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 26/192 (13%)
Query: 55 SAHQPSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQ 114
+AH + S GAA AAA+ A PAA + SG R +P ++S+ G +
Sbjct: 76 NAHNVTLSPGAAGAAASAALPAAAAAEH---------SGLRGRGAPPPAASASAAASGGE 126
Query: 115 DSVHSSPEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGGFKCPVCSK-FVSSDEMD 173
D +S D G +D G G PR + H +C +C++ F +
Sbjct: 127 DEEEASSPDSGHLKD---GIRRGRPRADTVRDLINEGEHSSSRIRCNICNRVFPREKSLQ 183
Query: 174 LHLVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARL-----PCLCIYHKGCIDE 228
H R E D +C + Q T RL P +C GC+
Sbjct: 184 AH-------KRTHTGERPYLCDYPDCGKAFVQSGQLKTHQRLHTGEKPFVC-SENGCLSR 235
Query: 229 WFEVNRSCPEHP 240
+ NR CP+HP
Sbjct: 236 FTHANRHCPKHP 247
>gi|29788758 ring finger protein 130 [Homo sapiens]
Length = 419
Score = 51.6 bits (122), Expect = 6e-07
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 180 LTKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCP 237
LT + + D CA+C+E +Q D + LPC ++HK C+D W + +CP
Sbjct: 245 LTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEHCTCP 302
>gi|29789407 ring finger protein 149 [Homo sapiens]
Length = 400
Score = 51.2 bits (121), Expect = 8e-07
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 185 ITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCP 237
+ + E + DA CA+C+E + D I LPC I+H+ CID W +R+CP
Sbjct: 255 VKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDHRTCP 307
>gi|7657520 ring finger protein 11 [Homo sapiens]
Length = 154
Score = 50.1 bits (118), Expect = 2e-06
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 176 LVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRS 235
L+ L K D K EC IC+ + GD I LPC+ IYH CID+W + +
Sbjct: 76 LIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFT 135
Query: 236 CP 237
CP
Sbjct: 136 CP 137
>gi|150170725 zinc and ring finger 4 [Homo sapiens]
Length = 429
Score = 50.1 bits (118), Expect = 2e-06
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 199 CAICLEELQQGDTIARLPCLCIYHKGCIDEWFE--VNRSCP 237
CAICL+E ++GD + LPC YH CID WF RSCP
Sbjct: 309 CAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCP 349
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 49.3 bits (116), Expect = 3e-06
Identities = 49/140 (35%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
Query: 25 SSSSGGA--NGTAGGGGGARAAAAGRFPAQVPSAHQP--SASGGAAAAAAAPAAPAAPRS 80
SSSSG +G G GGG + G+ P+Q + P SASGG + A + + S
Sbjct: 1867 SSSSGSVFGSGNTGRGGGFFSGLGGK-PSQDAANKNPFSSASGGFGSTATSNTSNLFGNS 1925
Query: 81 RSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSSPEDGGGGRDRPV-------G 133
+ G AS + Q P +S G SQ SSP GG PV G
Sbjct: 1926 GAK--TFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPPTFG 1983
Query: 134 GSPG-GPRLVIGSLPAHLSP 152
GSPG G GS PA SP
Sbjct: 1984 GSPGFGGVPAFGSAPAFTSP 2003
Score = 32.0 bits (71), Expect = 0.50
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 10/132 (7%)
Query: 6 SGPAAANGRTRAYSGSDLPSS--SSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASG 63
SG G + G P+ SSGG + + G G + G F A P P G
Sbjct: 1925 SGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKTGGFGA-APVFGSPPTFG 1983
Query: 64 GAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSSPED 123
G+ PA +AP S G+ G G A +S+G +G S +++
Sbjct: 1984 GSPGFGGVPAFGSAPAFTSPLGSTGGKVFGEGTAA-------ASAGGFGFGSSSNTTSFG 2036
Query: 124 GGGGRDRPVGGS 135
++ P GS
Sbjct: 2037 TLASQNAPTFGS 2048
Score = 28.9 bits (63), Expect = 4.2
Identities = 38/151 (25%), Positives = 54/151 (35%), Gaps = 11/151 (7%)
Query: 8 PAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGAAA 67
PA +N T A S S + S+ A G AR A PA S +A AA
Sbjct: 1546 PAVSNSGTAASSTSLVALSAE--ATPATTGVPDARTEAVP--PASSFSVPGQTAVTAAAI 1601
Query: 68 AAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSSPEDGGGG 127
++A P A + VA G A + F S S + + SS
Sbjct: 1602 SSAGPVAVETSSTPIASSTTSIVAPGPSAEAAAFGTVTSGSSVFAQPPAASSS-----SA 1656
Query: 128 RDRPVGGSPGGPRL--VIGSLPAHLSPHMFG 156
++ + P V G + A +P +FG
Sbjct: 1657 FNQLTNNTATAPSATPVFGQVAASTAPSLFG 1687
Score = 27.7 bits (60), Expect = 9.4
Identities = 34/135 (25%), Positives = 47/135 (34%), Gaps = 7/135 (5%)
Query: 6 SGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGA 65
S P + +G + S SSS + GGG + Q P Q + G
Sbjct: 1762 STPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPAFGQSPGFGQGGSVFGG 1821
Query: 66 AAAAAAPAAPAA---PRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSSPE 122
+AA AA + ++ G + G A+ SS S SV S
Sbjct: 1822 TSAATTTAATSGFSFCQASGFGSSNTGSVFGQAASTGGIVFGQQSS---SSSGSVFGSGN 1878
Query: 123 DG-GGGRDRPVGGSP 136
G GGG +GG P
Sbjct: 1879 TGRGGGFFSGLGGKP 1893
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 49.3 bits (116), Expect = 3e-06
Identities = 46/177 (25%), Positives = 60/177 (33%), Gaps = 23/177 (12%)
Query: 1 MGAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS 60
+G + P A SG+ + +SG A G GGG G + + S +
Sbjct: 334 LGGGEPSPGAGEPSKAGPSGAT--AGASGRATGPEAAGGGGAGGGGGGYRPIIQSPGYKT 391
Query: 61 ASGGAAAAAAAPAAPAAPRS------RSLGGAVGSV----ASGARAAQSPFSIPNSSSGP 110
GG AAA P PRS +SLGG + ASGA A P G
Sbjct: 392 GKGGYGAAAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQGL 451
Query: 111 YGSQ-----------DSVHSSPEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFG 156
G Q + +P GG P G P G P L ++G
Sbjct: 452 LGPQAYGQGFGGGQAQDLSKAPSYSGGPPQPPSGPPPPGLATCQSYSPDQLQGQLYG 508
Score = 38.1 bits (87), Expect = 0.007
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 3/127 (2%)
Query: 21 SDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAAPA---APAA 77
++L S GG + G G ++A +G A P A+GG A +
Sbjct: 327 ANLACSPLGGGEPSPGAGEPSKAGPSGATAGASGRATGPEAAGGGGAGGGGGGYRPIIQS 386
Query: 78 PRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSSPEDGGGGRDRPVGGSPG 137
P ++ G G+ A GA P S G + +++ + G G SPG
Sbjct: 387 PGYKTGKGGYGAAAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPG 446
Query: 138 GPRLVIG 144
P+ ++G
Sbjct: 447 QPQGLLG 453
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 48.9 bits (115), Expect = 4e-06
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 199 CAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCP 237
CAICLEE +G + + CL +H+ C+D W +R+CP
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCP 310
>gi|58331204 ring finger protein 150 [Homo sapiens]
Length = 438
Score = 48.9 bits (115), Expect = 4e-06
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 195 DAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCP 237
D CA+C+E + D + LPC ++HK C+D W +R+CP
Sbjct: 274 DFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCP 316
>gi|239749332 PREDICTED: hypothetical protein XP_002347002 [Homo
sapiens]
Length = 183
Score = 48.5 bits (114), Expect = 5e-06
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 174 LHLVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVN 233
L L+ CL + D ++ EC ICL E GD I LPC +H CID W +
Sbjct: 63 LSLLQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRS 122
Query: 234 RSCP 237
+CP
Sbjct: 123 FTCP 126
>gi|239743424 PREDICTED: hypothetical protein XP_002342853 [Homo
sapiens]
Length = 183
Score = 48.5 bits (114), Expect = 5e-06
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 174 LHLVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVN 233
L L+ CL + D ++ EC ICL E GD I LPC +H CID W +
Sbjct: 63 LSLLQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRS 122
Query: 234 RSCP 237
+CP
Sbjct: 123 FTCP 126
>gi|14149702 ring finger protein 167 [Homo sapiens]
Length = 350
Score = 47.8 bits (112), Expect = 9e-06
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 199 CAICLEELQQGDTIARLPCLCIYHKGCIDEWF-EVNRSCP 237
CAICL+E + GD + LPC YH C+D W + ++CP
Sbjct: 230 CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCP 269
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 47.8 bits (112), Expect = 9e-06
Identities = 46/157 (29%), Positives = 55/157 (35%), Gaps = 24/157 (15%)
Query: 12 NGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAA 71
N + Y G P + GG G GGGG G A A GA AAAAA
Sbjct: 234 NSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGG-------GAGAGGAGAGAVAAAAA 286
Query: 72 PAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPY-------GSQDSVHSSPEDG 124
AA AA GG G G+ A S P G G+ ++
Sbjct: 287 AAAAAA------GGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSA 340
Query: 125 GGGRDRPVGGS--PGGPRLVIGSLPAHLSPHM--FGG 157
GG R G + P G + L SP M +GG
Sbjct: 341 AGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGG 377
Score = 34.3 bits (77), Expect = 0.10
Identities = 37/116 (31%), Positives = 47/116 (40%), Gaps = 31/116 (26%)
Query: 36 GGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAAPAAPAAPRSRSLGG---------- 85
GGGGG PA VP + + G AA A+ P A P GG
Sbjct: 161 GGGGG---------PAAVPEFN--NYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMH 209
Query: 86 AVGSVASGARAAQSPFSIPNSSSGPYGSQDS---VHSSPEDGGGGRDRPVGGSPGG 138
+ + A+GA + P + NS G SQ + +S P GGGG GG GG
Sbjct: 210 SASAAAAGAPGSMDP--LQNSHEGYPNSQCNHYPGYSRPGAGGGG-----GGGGGG 258
Score = 34.3 bits (77), Expect = 0.10
Identities = 47/156 (30%), Positives = 60/156 (38%), Gaps = 44/156 (28%)
Query: 5 QSGPAAANGRTRAYSGSDLPSSSSGG--------ANGTAGGGGGARAAAA---GRFPA-- 51
Q GP R AYSG +PS+S G AN G G ++ A GR P+
Sbjct: 788 QYGPQGNYSRPPAYSG--VPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMPSAG 845
Query: 52 ------------QVPSAHQPSASGGA---------------AAAAAAPAAPAAPRSRSLG 84
PS+ S GG AAAA AA + +SR G
Sbjct: 846 MQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQ-G 904
Query: 85 GAVGSVASGARAAQSPFSIP-NSSSGPYGSQDSVHS 119
G SG A+ SP+S P N+SS +Q +S
Sbjct: 905 SFPGMNQSGLMASSSPYSQPMNNSSSLMNTQAPPYS 940
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/89 (28%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 6 SGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGA 65
S P A G G GG AGG G AAA A +A GG
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAA---AAAAAAAGGGGGGGY 300
Query: 66 AAAAAAPAAPAAPRSRSLGGAVGSVASGA 94
++A ++PR + G +G GA
Sbjct: 301 GGSSAGYGVLSSPRQQGGGMMMGPGGGGA 329
Score = 33.1 bits (74), Expect = 0.22
Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 13/156 (8%)
Query: 2 GAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS- 60
G G G +G+ ++++ A AGGGGG + + S Q
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGG 318
Query: 61 ------ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQ 114
GGAA+ + A A AA + G + + P+ YG
Sbjct: 319 GMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGS 378
Query: 115 DSVHSSPEDGGGGRDRP------VGGSPGGPRLVIG 144
+SSP +P G + GG + G
Sbjct: 379 YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAG 414
Score = 31.2 bits (69), Expect = 0.85
Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 34/130 (26%)
Query: 20 GSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAAPAAPAAPR 79
G D+ GGA +A GG A P S G A PA R
Sbjct: 93 GPDMEQPQHGGAKDSAAGG-----------QADPPGPPLLSKPGDEDDAPPKMGEPAGGR 141
Query: 80 SRSLG-GAVGSVASGARAAQSPFSIPNSSSGP---------YGSQDSVHSSPEDGG-GGR 128
G GA+G+ Q P ++P GP YGS ++P GG GGR
Sbjct: 142 YEHPGLGALGT-------QQPPVAVPGGGGGPAAVPEFNNYYGS-----AAPASGGPGGR 189
Query: 129 DRPVGGSPGG 138
P GG
Sbjct: 190 AGPCFDQHGG 199
Score = 28.9 bits (63), Expect = 4.2
Identities = 43/168 (25%), Positives = 60/168 (35%), Gaps = 14/168 (8%)
Query: 3 AKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGG--------GGGARAAAAGRFPAQVP 54
+K + +AA G R + PS ++ N GG ++ P P
Sbjct: 333 SKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPP 392
Query: 55 SAHQPSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSG-PYGS 113
S Q A+ AAA AA + + GA + AS A AA S P S G P +
Sbjct: 393 SQPQSQAAAAGAAAGGQQAAAGMGLGKDM-GAQYAAASPAWAAAQQRSHPAMSPGTPGPT 451
Query: 114 QDSVHSSPEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGGFKCP 161
SP D + + G P S P SP+ G + P
Sbjct: 452 MGRSQGSPMDPMVMKRPQLYGMGSNPH----SQPQQSSPYPGGSYGPP 495
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 47.8 bits (112), Expect = 9e-06
Identities = 46/157 (29%), Positives = 55/157 (35%), Gaps = 24/157 (15%)
Query: 12 NGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAA 71
N + Y G P + GG G GGGG G A A GA AAAAA
Sbjct: 234 NSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGG-------GAGAGGAGAGAVAAAAA 286
Query: 72 PAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPY-------GSQDSVHSSPEDG 124
AA AA GG G G+ A S P G G+ ++
Sbjct: 287 AAAAAA------GGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSA 340
Query: 125 GGGRDRPVGGS--PGGPRLVIGSLPAHLSPHM--FGG 157
GG R G + P G + L SP M +GG
Sbjct: 341 AGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGG 377
Score = 34.3 bits (77), Expect = 0.10
Identities = 37/116 (31%), Positives = 47/116 (40%), Gaps = 31/116 (26%)
Query: 36 GGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAAPAAPAAPRSRSLGG---------- 85
GGGGG PA VP + + G AA A+ P A P GG
Sbjct: 161 GGGGG---------PAAVPEFN--NYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMH 209
Query: 86 AVGSVASGARAAQSPFSIPNSSSGPYGSQDS---VHSSPEDGGGGRDRPVGGSPGG 138
+ + A+GA + P + NS G SQ + +S P GGGG GG GG
Sbjct: 210 SASAAAAGAPGSMDP--LQNSHEGYPNSQCNHYPGYSRPGAGGGG-----GGGGGG 258
Score = 34.3 bits (77), Expect = 0.10
Identities = 47/156 (30%), Positives = 60/156 (38%), Gaps = 44/156 (28%)
Query: 5 QSGPAAANGRTRAYSGSDLPSSSSGG--------ANGTAGGGGGARAAAA---GRFPA-- 51
Q GP R AYSG +PS+S G AN G G ++ A GR P+
Sbjct: 775 QYGPQGNYSRPPAYSG--VPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMPSAG 832
Query: 52 ------------QVPSAHQPSASGGA---------------AAAAAAPAAPAAPRSRSLG 84
PS+ S GG AAAA AA + +SR G
Sbjct: 833 MQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQ-G 891
Query: 85 GAVGSVASGARAAQSPFSIP-NSSSGPYGSQDSVHS 119
G SG A+ SP+S P N+SS +Q +S
Sbjct: 892 SFPGMNQSGLMASSSPYSQPMNNSSSLMNTQAPPYS 927
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/89 (28%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 6 SGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGA 65
S P A G G GG AGG G AAA A +A GG
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAA---AAAAAAAGGGGGGGY 300
Query: 66 AAAAAAPAAPAAPRSRSLGGAVGSVASGA 94
++A ++PR + G +G GA
Sbjct: 301 GGSSAGYGVLSSPRQQGGGMMMGPGGGGA 329
Score = 33.1 bits (74), Expect = 0.22
Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 13/156 (8%)
Query: 2 GAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS- 60
G G G +G+ ++++ A AGGGGG + + S Q
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGG 318
Query: 61 ------ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQ 114
GGAA+ + A A AA + G + + P+ YG
Sbjct: 319 GMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGS 378
Query: 115 DSVHSSPEDGGGGRDRP------VGGSPGGPRLVIG 144
+SSP +P G + GG + G
Sbjct: 379 YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAG 414
Score = 31.2 bits (69), Expect = 0.85
Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 34/130 (26%)
Query: 20 GSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAAPAAPAAPR 79
G D+ GGA +A GG A P S G A PA R
Sbjct: 93 GPDMEQPQHGGAKDSAAGG-----------QADPPGPPLLSKPGDEDDAPPKMGEPAGGR 141
Query: 80 SRSLG-GAVGSVASGARAAQSPFSIPNSSSGP---------YGSQDSVHSSPEDGG-GGR 128
G GA+G+ Q P ++P GP YGS ++P GG GGR
Sbjct: 142 YEHPGLGALGT-------QQPPVAVPGGGGGPAAVPEFNNYYGS-----AAPASGGPGGR 189
Query: 129 DRPVGGSPGG 138
P GG
Sbjct: 190 AGPCFDQHGG 199
Score = 28.9 bits (63), Expect = 4.2
Identities = 43/168 (25%), Positives = 60/168 (35%), Gaps = 14/168 (8%)
Query: 3 AKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGG--------GGGARAAAAGRFPAQVP 54
+K + +AA G R + PS ++ N GG ++ P P
Sbjct: 333 SKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPP 392
Query: 55 SAHQPSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSG-PYGS 113
S Q A+ AAA AA + + GA + AS A AA S P S G P +
Sbjct: 393 SQPQSQAAAAGAAAGGQQAAAGMGLGKDM-GAQYAAASPAWAAAQQRSHPAMSPGTPGPT 451
Query: 114 QDSVHSSPEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGGFKCP 161
SP D + + G P S P SP+ G + P
Sbjct: 452 MGRSQGSPMDPMVMKRPQLYGMGSNPH----SQPQQSSPYPGGSYGPP 495
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 47.8 bits (112), Expect = 9e-06
Identities = 46/157 (29%), Positives = 55/157 (35%), Gaps = 24/157 (15%)
Query: 12 NGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAA 71
N + Y G P + GG G GGGG G A A GA AAAAA
Sbjct: 234 NSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGG-------GAGAGGAGAGAVAAAAA 286
Query: 72 PAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPY-------GSQDSVHSSPEDG 124
AA AA GG G G+ A S P G G+ ++
Sbjct: 287 AAAAAA------GGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSA 340
Query: 125 GGGRDRPVGGS--PGGPRLVIGSLPAHLSPHM--FGG 157
GG R G + P G + L SP M +GG
Sbjct: 341 AGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGG 377
Score = 34.3 bits (77), Expect = 0.10
Identities = 37/116 (31%), Positives = 47/116 (40%), Gaps = 31/116 (26%)
Query: 36 GGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAAPAAPAAPRSRSLGG---------- 85
GGGGG PA VP + + G AA A+ P A P GG
Sbjct: 161 GGGGG---------PAAVPEFN--NYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMH 209
Query: 86 AVGSVASGARAAQSPFSIPNSSSGPYGSQDS---VHSSPEDGGGGRDRPVGGSPGG 138
+ + A+GA + P + NS G SQ + +S P GGGG GG GG
Sbjct: 210 SASAAAAGAPGSMDP--LQNSHEGYPNSQCNHYPGYSRPGAGGGG-----GGGGGG 258
Score = 34.3 bits (77), Expect = 0.10
Identities = 47/156 (30%), Positives = 60/156 (38%), Gaps = 44/156 (28%)
Query: 5 QSGPAAANGRTRAYSGSDLPSSSSGG--------ANGTAGGGGGARAAAA---GRFPA-- 51
Q GP R AYSG +PS+S G AN G G ++ A GR P+
Sbjct: 775 QYGPQGNYSRPPAYSG--VPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMPSAG 832
Query: 52 ------------QVPSAHQPSASGGA---------------AAAAAAPAAPAAPRSRSLG 84
PS+ S GG AAAA AA + +SR G
Sbjct: 833 MQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQ-G 891
Query: 85 GAVGSVASGARAAQSPFSIP-NSSSGPYGSQDSVHS 119
G SG A+ SP+S P N+SS +Q +S
Sbjct: 892 SFPGMNQSGLMASSSPYSQPMNNSSSLMNTQAPPYS 927
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/89 (28%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 6 SGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGA 65
S P A G G GG AGG G AAA A +A GG
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAA---AAAAAAAGGGGGGGY 300
Query: 66 AAAAAAPAAPAAPRSRSLGGAVGSVASGA 94
++A ++PR + G +G GA
Sbjct: 301 GGSSAGYGVLSSPRQQGGGMMMGPGGGGA 329
Score = 33.1 bits (74), Expect = 0.22
Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 13/156 (8%)
Query: 2 GAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS- 60
G G G +G+ ++++ A AGGGGG + + S Q
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGG 318
Query: 61 ------ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQ 114
GGAA+ + A A AA + G + + P+ YG
Sbjct: 319 GMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGS 378
Query: 115 DSVHSSPEDGGGGRDRP------VGGSPGGPRLVIG 144
+SSP +P G + GG + G
Sbjct: 379 YPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAG 414
Score = 31.2 bits (69), Expect = 0.85
Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 34/130 (26%)
Query: 20 GSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAAPAAPAAPR 79
G D+ GGA +A GG A P S G A PA R
Sbjct: 93 GPDMEQPQHGGAKDSAAGG-----------QADPPGPPLLSKPGDEDDAPPKMGEPAGGR 141
Query: 80 SRSLG-GAVGSVASGARAAQSPFSIPNSSSGP---------YGSQDSVHSSPEDGG-GGR 128
G GA+G+ Q P ++P GP YGS ++P GG GGR
Sbjct: 142 YEHPGLGALGT-------QQPPVAVPGGGGGPAAVPEFNNYYGS-----AAPASGGPGGR 189
Query: 129 DRPVGGSPGG 138
P GG
Sbjct: 190 AGPCFDQHGG 199
Score = 28.9 bits (63), Expect = 4.2
Identities = 43/168 (25%), Positives = 60/168 (35%), Gaps = 14/168 (8%)
Query: 3 AKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGG--------GGGARAAAAGRFPAQVP 54
+K + +AA G R + PS ++ N GG ++ P P
Sbjct: 333 SKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPP 392
Query: 55 SAHQPSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSG-PYGS 113
S Q A+ AAA AA + + GA + AS A AA S P S G P +
Sbjct: 393 SQPQSQAAAAGAAAGGQQAAAGMGLGKDM-GAQYAAASPAWAAAQQRSHPAMSPGTPGPT 451
Query: 114 QDSVHSSPEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGGFKCP 161
SP D + + G P S P SP+ G + P
Sbjct: 452 MGRSQGSPMDPMVMKRPQLYGMGSNPH----SQPQQSSPYPGGSYGPP 495
>gi|38045931 ring finger protein 122 [Homo sapiens]
Length = 155
Score = 47.0 bits (110), Expect = 1e-05
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 184 RITYNEDVLSKDAGE-------CAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSC 236
R Y E VL DA + CA+CLE+ + D + LPC +H+ C+ +W EV C
Sbjct: 71 RYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVC 130
Query: 237 P 237
P
Sbjct: 131 P 131
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 46.6 bits (109), Expect = 2e-05
Identities = 30/132 (22%), Positives = 59/132 (44%)
Query: 3 AKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSAS 62
+ S ++++ + + SGS+ G NG G G G R +A A P++ S+S
Sbjct: 2561 SSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSS 2620
Query: 63 GGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSSPE 122
+++++++ ++ ++ S S + S +S + ++ S S +SSS S SS
Sbjct: 2621 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCS 2680
Query: 123 DGGGGRDRPVGG 134
P G
Sbjct: 2681 SDDEAAPAPTAG 2692
Score = 42.0 bits (97), Expect = 5e-04
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 12/147 (8%)
Query: 3 AKQSGPAAANGRTRAYSGSDLPSSSS--------GGANGTAGGGGGARAAAAGRFPAQVP 54
A+Q G + + + SGS SSSS G G G GG GR +
Sbjct: 2549 AEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGG--CGTGGRNCSAAS 2606
Query: 55 S-AHQPSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGS 113
S A P++S +++++++ ++ ++ S S + S +S + ++ S S +SSS S
Sbjct: 2607 SRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2666
Query: 114 QDSVHSSPEDGGGGRDRPVGGSP-GGP 139
S ++ ED D +P GP
Sbjct: 2667 SSSSSTTDEDSSCSSDDEAAPAPTAGP 2693
Score = 36.2 bits (82), Expect = 0.026
Identities = 40/140 (28%), Positives = 51/140 (36%), Gaps = 24/140 (17%)
Query: 3 AKQSGPAAANGRTRAYSGS---DLPSSSSGGANGTAGGGG--------GARAAAAGRFPA 51
A SG A+A YSGS D + GG + GG +A A R A
Sbjct: 576 AHGSGEASAMQSLIKYSGSFARDAVAVRPGGCGKKSPFGGLGTMKPEPAPTSAGASRAQA 635
Query: 52 QVPSAHQPSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPY 111
++P + P+A GG P P S G GS A G + P P
Sbjct: 636 RLPHSGGPAAGGG----RQLKRDPERPESAKAFGREGSGAQGEAEVRHP---------PV 682
Query: 112 GSQDSVHSSPEDGGGGRDRP 131
G +V + GG GR P
Sbjct: 683 GIAVAVARQKDSGGSGRLGP 702
Score = 28.5 bits (62), Expect = 5.5
Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 18/145 (12%)
Query: 3 AKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSAS 62
++ + PA+++ + + S S SSSS ++ ++ + ++++ + S+ S+S
Sbjct: 2607 SRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2666
Query: 63 GGAAAAA-----------AAPAAPAAPRSR-SLGGAVGSVASGAR-AAQSP---FSIPNS 106
+++ AAPA A P ++ +L A AR +A SP P
Sbjct: 2667 SSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQP 2726
Query: 107 SSGPYGSQDSVHSSPEDGGGGRDRP 131
+ P Q + P+ G + RP
Sbjct: 2727 QAPP--PQPTQPLQPKAQAGAKSRP 2749
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 46.6 bits (109), Expect = 2e-05
Identities = 48/148 (32%), Positives = 62/148 (41%), Gaps = 23/148 (15%)
Query: 7 GPAAANGRTRAYSGSDLPS------SSSGGANGTAGG--GGGARAAAAGRFPAQVPSAHQ 58
GP+AA G T + + + SS+ G G GG GG + AG+ PA + S Q
Sbjct: 278 GPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMAS--Q 335
Query: 59 PSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASG----ARAAQ--SPFS-------IPN 105
+ AAAAAAA + A RS + GS G AR Q SP P
Sbjct: 336 CWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPY 395
Query: 106 SSSGPYGSQDSVHSSPEDGGGGRDRPVG 133
+ PY Q S P+ G G +P G
Sbjct: 396 GGTNPYSQQQGPPSGPQQGHGYPGQPYG 423
Score = 42.7 bits (99), Expect = 3e-04
Identities = 38/146 (26%), Positives = 55/146 (37%), Gaps = 16/146 (10%)
Query: 2 GAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARA--------AAAGRFPAQV 53
G + GPA + D S+ GG G AG GGG A AG PA
Sbjct: 55 GQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALN 114
Query: 54 PSAHQPSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGS 113
+ +P GG ++ A P + + A G G +SP ++ +++ +
Sbjct: 115 NNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYG---FGQPYGRSPSAVAAAAAAVFHQ 171
Query: 114 QDSVHSSP-----EDGGGGRDRPVGG 134
Q SP + GGGG P G
Sbjct: 172 QHGGQQSPGLAALQSGGGGGLEPYAG 197
Score = 42.0 bits (97), Expect = 5e-04
Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 10/146 (6%)
Query: 12 NGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAA 71
N R ++L GG G++ G G +AA P QP +A AAAA
Sbjct: 106 NAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAA 165
Query: 72 PAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS---------PE 122
A + ++ SG P++ P +S +G + ++S P
Sbjct: 166 AAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPP 225
Query: 123 DGGGGRDRPVGGSPG-GPRLVIGSLP 147
P GG+PG G GS P
Sbjct: 226 APAYALSSPRGGTPGSGAAAAAGSKP 251
Score = 39.3 bits (90), Expect = 0.003
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 27 SSGGANGTAGGGGGARAAAAGR-------FPAQVPSAHQPSASGGAAAAAAAPAAPAAPR 79
S G A +GGGGG A + FP +++ P+ S A P APA
Sbjct: 178 SPGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRS------AYPPPAPAYAL 231
Query: 80 SRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS--PEDGGGGRDRPVGGSP 136
S GG GS A+ A ++ P P+SS+ S S GGGG GG+P
Sbjct: 232 SSPRGGTPGSGAAAAAGSKPP---PSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTP 287
Score = 38.1 bits (87), Expect = 0.007
Identities = 46/168 (27%), Positives = 66/168 (39%), Gaps = 19/168 (11%)
Query: 2 GAKQSGPAAANG-RTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAG---RFPAQVPSAH 57
G SG AAA G + S + SSSS A G GG +AAG P P+ +
Sbjct: 237 GTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLN 296
Query: 58 Q----PSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGS 113
Q PS++ G + P+ G +AS A + + ++SG G+
Sbjct: 297 QLLTSPSSARGYQGYPGGDYS-GGPQDGGAGKGPADMASQCWGAAAAAAAAAAASG--GA 353
Query: 114 QDSVHSSP----EDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGG 157
Q H +P GGGG+ P P +G + P +GG
Sbjct: 354 QQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGK----MRPQPYGG 397
Score = 35.8 bits (81), Expect = 0.034
Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 6/147 (4%)
Query: 3 AKQSGPAAAN--GRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS 60
A Q PAAA+ G S+L + GG A AAAA R + + +
Sbjct: 2 AAQVAPAAASSLGNPPPPPPSELKKAEQ--QQREEAGGEAAAAAAAERGEMKAAAGQESE 59
Query: 61 ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS 120
S GG G+ + G A+ N ++GP + ++ +
Sbjct: 60 GPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTE 119
Query: 121 PEDGGGGRDRPVGGSPGGPRLVIGSLP 147
P GGGG G+P P +LP
Sbjct: 120 PPGGGGGGSSDGVGAP--PHSAAAALP 144
Score = 30.0 bits (66), Expect = 1.9
Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 26/123 (21%)
Query: 19 SGS--DLPSSSSGGANGTAGGGGGARAAAAGRFPAQVP-----SAHQPSASGGAAAAAAA 71
SGS DLP + G + G + + PAQ P S H P G + + +
Sbjct: 643 SGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGS 702
Query: 72 PAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSS---SGPYGSQDSV-HSSPEDGGGG 127
PA+ A RS L SP ++P + P G DS+ H S
Sbjct: 703 PASVAQSRSGPL---------------SPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIA 747
Query: 128 RDR 130
+DR
Sbjct: 748 QDR 750
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 46.6 bits (109), Expect = 2e-05
Identities = 48/148 (32%), Positives = 62/148 (41%), Gaps = 23/148 (15%)
Query: 7 GPAAANGRTRAYSGSDLPS------SSSGGANGTAGG--GGGARAAAAGRFPAQVPSAHQ 58
GP+AA G T + + + SS+ G G GG GG + AG+ PA + S Q
Sbjct: 278 GPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMAS--Q 335
Query: 59 PSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASG----ARAAQ--SPFS-------IPN 105
+ AAAAAAA + A RS + GS G AR Q SP P
Sbjct: 336 CWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPY 395
Query: 106 SSSGPYGSQDSVHSSPEDGGGGRDRPVG 133
+ PY Q S P+ G G +P G
Sbjct: 396 GGTNPYSQQQGPPSGPQQGHGYPGQPYG 423
Score = 42.7 bits (99), Expect = 3e-04
Identities = 38/146 (26%), Positives = 55/146 (37%), Gaps = 16/146 (10%)
Query: 2 GAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARA--------AAAGRFPAQV 53
G + GPA + D S+ GG G AG GGG A AG PA
Sbjct: 55 GQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALN 114
Query: 54 PSAHQPSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGS 113
+ +P GG ++ A P + + A G G +SP ++ +++ +
Sbjct: 115 NNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYG---FGQPYGRSPSAVAAAAAAVFHQ 171
Query: 114 QDSVHSSP-----EDGGGGRDRPVGG 134
Q SP + GGGG P G
Sbjct: 172 QHGGQQSPGLAALQSGGGGGLEPYAG 197
Score = 42.0 bits (97), Expect = 5e-04
Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 10/146 (6%)
Query: 12 NGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAA 71
N R ++L GG G++ G G +AA P QP +A AAAA
Sbjct: 106 NAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAA 165
Query: 72 PAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS---------PE 122
A + ++ SG P++ P +S +G + ++S P
Sbjct: 166 AAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPP 225
Query: 123 DGGGGRDRPVGGSPG-GPRLVIGSLP 147
P GG+PG G GS P
Sbjct: 226 APAYALSSPRGGTPGSGAAAAAGSKP 251
Score = 39.3 bits (90), Expect = 0.003
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 27 SSGGANGTAGGGGGARAAAAGR-------FPAQVPSAHQPSASGGAAAAAAAPAAPAAPR 79
S G A +GGGGG A + FP +++ P+ S A P APA
Sbjct: 178 SPGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRS------AYPPPAPAYAL 231
Query: 80 SRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS--PEDGGGGRDRPVGGSP 136
S GG GS A+ A ++ P P+SS+ S S GGGG GG+P
Sbjct: 232 SSPRGGTPGSGAAAAAGSKPP---PSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTP 287
Score = 38.1 bits (87), Expect = 0.007
Identities = 46/168 (27%), Positives = 66/168 (39%), Gaps = 19/168 (11%)
Query: 2 GAKQSGPAAANG-RTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAG---RFPAQVPSAH 57
G SG AAA G + S + SSSS A G GG +AAG P P+ +
Sbjct: 237 GTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLN 296
Query: 58 Q----PSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGS 113
Q PS++ G + P+ G +AS A + + ++SG G+
Sbjct: 297 QLLTSPSSARGYQGYPGGDYS-GGPQDGGAGKGPADMASQCWGAAAAAAAAAAASG--GA 353
Query: 114 QDSVHSSP----EDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGG 157
Q H +P GGGG+ P P +G + P +GG
Sbjct: 354 QQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGK----MRPQPYGG 397
Score = 35.8 bits (81), Expect = 0.034
Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 6/147 (4%)
Query: 3 AKQSGPAAAN--GRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS 60
A Q PAAA+ G S+L + GG A AAAA R + + +
Sbjct: 2 AAQVAPAAASSLGNPPPPPPSELKKAEQ--QQREEAGGEAAAAAAAERGEMKAAAGQESE 59
Query: 61 ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS 120
S GG G+ + G A+ N ++GP + ++ +
Sbjct: 60 GPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTE 119
Query: 121 PEDGGGGRDRPVGGSPGGPRLVIGSLP 147
P GGGG G+P P +LP
Sbjct: 120 PPGGGGGGSSDGVGAP--PHSAAAALP 144
Score = 30.0 bits (66), Expect = 1.9
Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 26/123 (21%)
Query: 19 SGS--DLPSSSSGGANGTAGGGGGARAAAAGRFPAQVP-----SAHQPSASGGAAAAAAA 71
SGS DLP + G + G + + PAQ P S H P G + + +
Sbjct: 643 SGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGS 702
Query: 72 PAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSS---SGPYGSQDSV-HSSPEDGGGG 127
PA+ A RS L SP ++P + P G DS+ H S
Sbjct: 703 PASVAQSRSGPL---------------SPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIA 747
Query: 128 RDR 130
+DR
Sbjct: 748 QDR 750
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 46.2 bits (108), Expect = 3e-05
Identities = 48/147 (32%), Positives = 55/147 (37%), Gaps = 32/147 (21%)
Query: 24 PSSSSGGANGTAGGGGGARAAAAG-----------------RFPAQVPSAHQPSASGGAA 66
P GA G AGG G A A A G +P P + P AS A
Sbjct: 162 PGKGLFGAGGAAGGCGVAGAGADGYGYLAPPKYLQSGFLNNSWPLPQPPSPMPYASCQMA 221
Query: 67 AAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSSPEDGGG 126
AAAAA AA AA A G + GA A + P +S GPY S+ P G
Sbjct: 222 AAAAAAAAAAA--------AAGPGSPGAAAVVKGLAGPAASYGPYTRVQSMALPP--GVV 271
Query: 127 GRDRPVGGSPGGPRLVIGSLPAHLSPH 153
+GG P P P H PH
Sbjct: 272 NSYNGLGGPPAAP-----PPPPHPHPH 293
>gi|37588873 ring finger protein 128 isoform 1 [Homo sapiens]
Length = 428
Score = 46.2 bits (108), Expect = 3e-05
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 192 LSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCP 237
+ D CA+C+E + D + L C I+HK C+D W +R+CP
Sbjct: 270 IGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCP 315
>gi|37588871 ring finger protein 128 isoform 2 [Homo sapiens]
Length = 402
Score = 46.2 bits (108), Expect = 3e-05
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 192 LSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCP 237
+ D CA+C+E + D + L C I+HK C+D W +R+CP
Sbjct: 244 IGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCP 289
>gi|5174653 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 45.8 bits (107), Expect = 3e-05
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 166 FVSSDEMDLHLVMCLTKPRIT------YNEDVLSKDAGE-CAICLEELQQGDTIARLPCL 218
F+ ++ D + LTK +I Y + + + G+ C++C+ + G+ + +LPC+
Sbjct: 592 FLLNESDDDDRIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCM 651
Query: 219 CIYHKGCIDEWFEVNRSCP 237
+H CID W N +CP
Sbjct: 652 HEFHIHCIDRWLSENCTCP 670
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,212,880
Number of Sequences: 37866
Number of extensions: 736795
Number of successful extensions: 13132
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 930
Number of HSP's that attempted gapping in prelim test: 6189
Number of HSP's gapped (non-prelim): 4908
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.