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Search of human proteins with 237858765
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237858765 RPA interacting protein isoform e [Homo sapiens]
(148 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237858765 RPA interacting protein isoform e [Homo sapiens] 298 9e-82
gi|237858701 RPA interacting protein isoform c [Homo sapiens] 287 2e-78
gi|237858698 RPA interacting protein isoform a [Homo sapiens] 287 2e-78
gi|237858695 RPA interacting protein isoform b [Homo sapiens] 287 2e-78
gi|237858768 RPA interacting protein isoform f [Homo sapiens] 209 5e-55
gi|237858705 RPA interacting protein isoform d [Homo sapiens] 209 5e-55
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 36 0.013
gi|50980301 myosin phosphatase-Rho interacting protein isoform 2... 32 0.15
gi|50980307 myosin phosphatase-Rho interacting protein isoform 1... 32 0.15
gi|71061468 centromere protein E [Homo sapiens] 32 0.25
gi|87298939 hypothetical protein LOC131831 [Homo sapiens] 30 0.57
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 30 0.96
gi|26051235 nucleoporin 133kDa [Homo sapiens] 30 0.96
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [... 30 0.96
gi|89886468 fibronectin type III and SPRY domain containing 1-li... 29 1.3
gi|13994289 fibronectin type III and SPRY domain containing 1-li... 29 1.3
gi|209862789 microtubule associated monoxygenase, calponin and L... 29 1.3
gi|4504063 golgin 97 [Homo sapiens] 29 1.6
gi|239755820 PREDICTED: similar to keratin 86, partial [Homo sap... 28 2.1
gi|169216384 PREDICTED: similar to hCG1805148 [Homo sapiens] 28 2.1
gi|169216638 PREDICTED: similar to hCG1805148 [Homo sapiens] 28 2.1
gi|169208458 PREDICTED: similar to golgi autoantigen, golgin sub... 28 2.1
gi|223718222 fibronectin type III and SPRY domain containing 1-l... 28 2.1
gi|154937324 hypothetical protein LOC440295 [Homo sapiens] 28 2.1
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 28 2.8
gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo ... 28 2.8
gi|27886520 nuclear factor of activated T-cells 5 isoform a [Hom... 28 2.8
gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo... 28 2.8
gi|164419746 nuclear factor of activated T-cells 5 isoform d [Ho... 28 2.8
gi|164419744 nuclear factor of activated T-cells 5 isoform b [Ho... 28 2.8
>gi|237858765 RPA interacting protein isoform e [Homo sapiens]
Length = 148
Score = 298 bits (764), Expect = 9e-82
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
Query: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120
VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE
Sbjct: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120
Query: 121 KCLSIMLAEWEANPLICPVCTKPVILGL 148
KCLSIMLAEWEANPLICPVCTKPVILGL
Sbjct: 121 KCLSIMLAEWEANPLICPVCTKPVILGL 148
>gi|237858701 RPA interacting protein isoform c [Homo sapiens]
Length = 172
Score = 287 bits (735), Expect = 2e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
Query: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120
VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE
Sbjct: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120
Query: 121 KCLSIMLAEWEANPLICPVCTK 142
KCLSIMLAEWEANPLICPVCTK
Sbjct: 121 KCLSIMLAEWEANPLICPVCTK 142
>gi|237858698 RPA interacting protein isoform a [Homo sapiens]
Length = 231
Score = 287 bits (735), Expect = 2e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
Query: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120
VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE
Sbjct: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120
Query: 121 KCLSIMLAEWEANPLICPVCTK 142
KCLSIMLAEWEANPLICPVCTK
Sbjct: 121 KCLSIMLAEWEANPLICPVCTK 142
>gi|237858695 RPA interacting protein isoform b [Homo sapiens]
Length = 219
Score = 287 bits (735), Expect = 2e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
Query: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120
VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE
Sbjct: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120
Query: 121 KCLSIMLAEWEANPLICPVCTK 142
KCLSIMLAEWEANPLICPVCTK
Sbjct: 121 KCLSIMLAEWEANPLICPVCTK 142
>gi|237858768 RPA interacting protein isoform f [Homo sapiens]
Length = 106
Score = 209 bits (533), Expect = 5e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
Query: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
>gi|237858705 RPA interacting protein isoform d [Homo sapiens]
Length = 106
Score = 209 bits (533), Expect = 5e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1 MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
Query: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61 VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 35.8 bits (81), Expect = 0.013
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 16/119 (13%)
Query: 43 RYRQAGSSGPGN-----SQNSFLVQEVMEEEWNAL-QSVENCPEDLAQLEELIDMAVLEE 96
+++++G+ PGN NS L + + + + +S+EN PE+L ++E D L +
Sbjct: 1617 QHKRSGTQAPGNLCCLYQTNSKLYESLTYSQMSRTSESLENEPENLVRVESRDDHLSLPD 1676
Query: 97 IQQE----------LINQEQSIISEYEKSLQFDEKCLSIMLAEWEANPLICPVCTKPVI 145
+ E IN ++S++ E +S+ + +K LS + ++ +P K VI
Sbjct: 1677 VTCENFISKVQDVISINHDESLLPESLESMMYGKKVLSQEPSSFQESPSTNTESRKDVI 1735
>gi|50980301 myosin phosphatase-Rho interacting protein isoform 2
[Homo sapiens]
Length = 1025
Score = 32.3 bits (72), Expect = 0.15
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 27 QRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLE 86
QR LE++R +DRLL A S +N+ + E E + + + D+
Sbjct: 747 QRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQRSQISSVNSDV---- 802
Query: 87 ELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEKCL 123
E + LEE+Q + +E ++SE Q+ +KCL
Sbjct: 803 EALRRQYLEELQS--VQRELEVLSE-----QYSQKCL 832
>gi|50980307 myosin phosphatase-Rho interacting protein isoform 1
[Homo sapiens]
Length = 1038
Score = 32.3 bits (72), Expect = 0.15
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 27 QRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLE 86
QR LE++R +DRLL A S +N+ + E E + + + D+
Sbjct: 747 QRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQRSQISSVNSDV---- 802
Query: 87 ELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEKCL 123
E + LEE+Q + +E ++SE Q+ +KCL
Sbjct: 803 EALRRQYLEELQS--VQRELEVLSE-----QYSQKCL 832
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 31.6 bits (70), Expect = 0.25
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 15/125 (12%)
Query: 22 KEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPED 81
KE R +R+ ++L + +Q Q VQE M E + +EN +
Sbjct: 1111 KEGELSRTCDRLAEVEEKLKEKSQQLQEK----QQQLLNVQEEMSEMQKKINEIENLKNE 1166
Query: 82 LAQLEELIDMAVLE--EIQQEL---------INQEQSIISEYEKSLQFDEKCLSIMLAEW 130
L E ++ E E+ Q+L I +E+ ++ E +KS + + L + E
Sbjct: 1167 LKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREI 1226
Query: 131 EANPL 135
EA L
Sbjct: 1227 EATGL 1231
>gi|87298939 hypothetical protein LOC131831 [Homo sapiens]
Length = 663
Score = 30.4 bits (67), Expect = 0.57
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 47 AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQ 106
+G PG +E+ EEE + VE E++ + EE ++ E +++EL+ +EQ
Sbjct: 8 SGFGDPGKKDQKESEEELEEEEEE--EEVEEEEEEVEEEEEEVEEEEEEVVEEELVGEEQ 65
Query: 107 SI 108
+
Sbjct: 66 EL 67
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 29.6 bits (65), Expect = 0.96
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 31 ERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELID 90
ER+R +RL + + G L QE +EE L E L ++EEL++
Sbjct: 318 ERLREQEERLCEQEKLPGQERLLEEVEKLLEQERRQEEQERLLERERL---LEEVEELLE 374
Query: 91 MAVL----EEIQQELINQEQSIISEYEKSLQFDEKCLSIMLAE 129
L E + Q+ QE + E E+ L+ + L AE
Sbjct: 375 QERLRQQDERLWQQETLQELERLRELERMLELGWEALYEQRAE 417
>gi|26051235 nucleoporin 133kDa [Homo sapiens]
Length = 1156
Score = 29.6 bits (65), Expect = 0.96
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 92 AVLEEIQQELINQEQSIISEYEKSLQFDEKCLSIMLAEWEANPLICPVCTKPVILGL 148
A+ + ++++ ++ ++E E+ L E +LAE + N PV T P ++GL
Sbjct: 978 ALASDFSEDMLQEKIEEMAEQERFLLHQETLPEQLLAEKQLNLSAMPVLTAPQLIGL 1034
>gi|121583542 mitogen-activated protein kinase kinase kinase 15
[Homo sapiens]
Length = 788
Score = 29.6 bits (65), Expect = 0.96
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 3 ESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQ 62
E R+PR L L+ P A R L RD+ L R+ +S+ ++
Sbjct: 439 ERTRAPRHHLGHLLSVPDESSALEDRGLASSPEDRDQGLFLLRK-------DSERRAILY 491
Query: 63 EVMEEEWNALQSVENCPEDLAQLEELIDMAV-----LEEIQQELINQEQ-----SIISEY 112
+++ EE N Q N E +AQ E + ++V + I ++ I + + IS+
Sbjct: 492 KILWEEQN--QVASNLQECVAQSSEELHLSVGHIKQIIGILRDFIRSPEHRVMATTISKL 549
Query: 113 EKSLQFDEKCLS 124
+ L FD +S
Sbjct: 550 KVDLDFDSSSIS 561
>gi|89886468 fibronectin type III and SPRY domain containing 1-like
isoform 1 [Homo sapiens]
Length = 498
Score = 29.3 bits (64), Expect = 1.3
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 22 KEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSV-ENCPE 80
KEA QR + + N D + N + G +NS + ++EE+++L S+ + E
Sbjct: 5 KEAL-QRIISTLANKNDEIQNFIDTLHHTLKGVQENSSNILSELDEEFDSLYSILDEVKE 63
Query: 81 DLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEKCLSI 125
+ + +E+Q + I+Q + + E+ L+F + L I
Sbjct: 64 SMINCIKQEQARKSQELQSQ-ISQCNNALENSEELLEFATRSLDI 107
>gi|13994289 fibronectin type III and SPRY domain containing 1-like
isoform 2 [Homo sapiens]
Length = 145
Score = 29.3 bits (64), Expect = 1.3
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 22 KEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSV-ENCPE 80
KEA QR + + N D + N + G +NS + ++EE+++L S+ + E
Sbjct: 5 KEAL-QRIISTLANKNDEIQNFIDTLHHTLKGVQENSSNILSELDEEFDSLYSILDEVKE 63
Query: 81 DLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEKCLSI 125
+ + +E+Q + I+Q + + E+ L+F + L I
Sbjct: 64 SMINCIKQEQARKSQELQSQ-ISQCNNALENSEELLEFATRSLDI 107
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 29.3 bits (64), Expect = 1.3
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 16 VGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEE 68
+G PWKEA R L + ++ + + S GPGN + +E EEE
Sbjct: 958 LGGVPWKEAVRIHALLKGKSEEE-----LEASKSFGPGNEEEEEEEEEYEEEE 1005
>gi|4504063 golgin 97 [Homo sapiens]
Length = 767
Score = 28.9 bits (63), Expect = 1.6
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 31 ERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL-- 88
E+++ S+ + + Q N ++S + Q+ + E L+ + + LE
Sbjct: 368 EQLQQSKGIVAAQETQIQELAAANQESSHVQQQALALEQQFLERTQALEAQIVALERTRA 427
Query: 89 IDMAVLEEIQQELINQEQSII----SEYEKSLQFDEKCLSIMLAEWEANPLI 136
D E+ ++L QE + + +EYE+SLQ + L + EW ++
Sbjct: 428 ADQTTAEQGMRQL-EQENAALKECRNEYERSLQNHQFELKKLKEEWSQREIV 478
>gi|239755820 PREDICTED: similar to keratin 86, partial [Homo
sapiens]
Length = 238
Score = 28.5 bits (62), Expect = 2.1
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 52 PGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELI-----DMAVLEEIQQELINQEQ 106
P SQNS L V + E ++ + LA+LE + DMA L QE++N +
Sbjct: 2 PPTSQNSKLEAAVAQSEQQGEAALSDARCKLAELEGALQKAKQDMACLIREYQEVMNSKL 61
Query: 107 SI---ISEYEKSLQFDEKCL 123
+ I+ Y + L+ +E+ L
Sbjct: 62 GLDIEIATYRRLLEGEEQRL 81
>gi|169216384 PREDICTED: similar to hCG1805148 [Homo sapiens]
Length = 476
Score = 28.5 bits (62), Expect = 2.1
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 46 QAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQE 105
Q+G+ F+ ++ EEW A E PED + E AVLEE + E E
Sbjct: 149 QSGACDGAALDPGFIGSALVPEEWVAEAEAEVAPEDFQEAIE----AVLEEEEDEAWEHE 204
Query: 106 Q 106
+
Sbjct: 205 E 205
>gi|169216638 PREDICTED: similar to hCG1805148 [Homo sapiens]
Length = 476
Score = 28.5 bits (62), Expect = 2.1
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 46 QAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQE 105
Q+G+ F+ ++ EEW A E PED + E AVLEE + E E
Sbjct: 149 QSGACDGAALDPGFIGSALVPEEWVAEAEAEVAPEDFQEAIE----AVLEEEEDEAWEHE 204
Query: 106 Q 106
+
Sbjct: 205 E 205
>gi|169208458 PREDICTED: similar to golgi autoantigen, golgin
subfamily a-like [Homo sapiens]
Length = 432
Score = 28.5 bits (62), Expect = 2.1
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 31 ERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELID 90
ER+R +RL + + G L QE +EE L E L ++EEL++
Sbjct: 227 ERLREQEERLCEQEKLPGQERLLEEVEKLLKQERRQEEQERLLERERL---LDEVEELLE 283
Query: 91 MAVLEEIQQELINQEQ----SIISEYEKSLQFDEKCLSIMLAE 129
L + + L QE + E E+ L+ + L AE
Sbjct: 284 QERLRQQDERLWQQETLRELERLRELERMLELGWEALYEQRAE 326
>gi|223718222 fibronectin type III and SPRY domain containing 1-like
isoform 3 [Homo sapiens]
Length = 530
Score = 28.5 bits (62), Expect = 2.1
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 27 QRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSV-ENCPEDLAQL 85
QR + + N D + N + G +NS + ++EE+++L S+ + E +
Sbjct: 41 QRIISTLANKNDEIQNFIDTLHHTLKGVQENSSNILSELDEEFDSLYSILDEVKESMINC 100
Query: 86 EELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEKCLSI 125
+ +E+Q + I+Q + + E+ L+F + L I
Sbjct: 101 IKQEQARKSQELQSQ-ISQCNNALENSEELLEFATRSLDI 139
>gi|154937324 hypothetical protein LOC440295 [Homo sapiens]
Length = 432
Score = 28.5 bits (62), Expect = 2.1
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 31 ERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELID 90
ER+R +RL + + G L QE +EE L E L ++EEL++
Sbjct: 227 ERLREQEERLCEQEKLPGQERLLEEVEKLLKQERRQEEQERLLERERL---LDEVEELLE 283
Query: 91 MAVLEEIQQELINQEQ----SIISEYEKSLQFDEKCLSIMLAE 129
L + + L QE + E E+ L+ + L AE
Sbjct: 284 QERLRQQDERLWQQETLRELERLRELERMLELGWEALYEQRAE 326
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 28.1 bits (61), Expect = 2.8
Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 31 ERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELI- 89
E++R + + + G + +QE E W + + + + + EE I
Sbjct: 633 EKIREQEEMTQEQEEKMGEQEEKMCEQEEKMQEQEETMWRQEEKIREQEKKIREQEEKIR 692
Query: 90 -DMAVLEEIQQELINQEQSIISEYEKSLQFDEKCLSIMLAEWE 131
+++E ++++ QE+ + + EK + +EK WE
Sbjct: 693 EQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEKMRRQEEKMWE 735
Score = 26.6 bits (57), Expect = 8.2
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 21 WKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPE 80
W+E RQ ++M +++ + + + QE E+ W + + E
Sbjct: 560 WEEEKRQEQEDKMWRQEEKIREQEEKVWRQEEKIREQEEKRQEQEEKMWKQEEKIREQEE 619
Query: 81 DLAQLEELIDMAVLEEIQQELINQEQ--SIISEYEKSLQFDEK 121
+ + EE I + +QE + QEQ + + EK + +EK
Sbjct: 620 KIQEQEEKIREQEEKIREQEEMTQEQEEKMGEQEEKMCEQEEK 662
>gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo
sapiens]
Length = 1045
Score = 28.1 bits (61), Expect = 2.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 70 NALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIIS-EYEKSLQFDEKCLSIM 126
NA ++V+N P A +E+ +D+ +L NQ +I+S + E S Q S+M
Sbjct: 977 NANKTVDNIPPLAASVEQTLDVREESTFVSDLENQPSNIVSLQTEPSRQLPSPRTSLM 1034
>gi|27886520 nuclear factor of activated T-cells 5 isoform a [Homo
sapiens]
Length = 1455
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 35 NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
NS +L N +Q GS+ G+S + LVQ+V+E + + + P+ ++E
Sbjct: 690 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 749
Query: 89 IDMAVLEEIQQ 99
+ + +++ Q
Sbjct: 750 LSADIFQQVSQ 760
>gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo
sapiens]
Length = 1531
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 35 NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
NS +L N +Q GS+ G+S + LVQ+V+E + + + P+ ++E
Sbjct: 766 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 825
Query: 89 IDMAVLEEIQQ 99
+ + +++ Q
Sbjct: 826 LSADIFQQVSQ 836
>gi|164419746 nuclear factor of activated T-cells 5 isoform d [Homo
sapiens]
Length = 1548
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 35 NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
NS +L N +Q GS+ G+S + LVQ+V+E + + + P+ ++E
Sbjct: 783 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 842
Query: 89 IDMAVLEEIQQ 99
+ + +++ Q
Sbjct: 843 LSADIFQQVSQ 853
>gi|164419744 nuclear factor of activated T-cells 5 isoform b [Homo
sapiens]
Length = 1549
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 35 NSRDRLLNRYRQ------AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL 88
NS +L N +Q GS+ G+S + LVQ+V+E + + + P+ ++E
Sbjct: 784 NSVSQLQNTIQQLQAGSFTGSTASGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQ 843
Query: 89 IDMAVLEEIQQ 99
+ + +++ Q
Sbjct: 844 LSADIFQQVSQ 854
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,862,994
Number of Sequences: 37866
Number of extensions: 233276
Number of successful extensions: 1202
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1154
Number of HSP's gapped (non-prelim): 112
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.