Search of human proteins with 237858698

Search of human proteins with 237858698

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|237858698 RPA interacting protein isoform a [Homo sapiens]
         (231 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237858698 RPA interacting protein isoform a [Homo sapiens]         473   e-134
gi|237858695 RPA interacting protein isoform b [Homo sapiens]         429   e-120
gi|237858701 RPA interacting protein isoform c [Homo sapiens]         332   2e-91
gi|237858765 RPA interacting protein isoform e [Homo sapiens]         287   5e-78
gi|237858768 RPA interacting protein isoform f [Homo sapiens]         209   1e-54
gi|237858705 RPA interacting protein isoform d [Homo sapiens]         209   1e-54
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa...    35   0.042
gi|50980301 myosin phosphatase-Rho interacting protein isoform 2...    32   0.35 
gi|50980307 myosin phosphatase-Rho interacting protein isoform 1...    32   0.35 
gi|157743243 phospholipase A2, group IIC [Homo sapiens]                32   0.46 
gi|71061468 centromere protein E [Homo sapiens]                        32   0.60 
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]              30   1.3  
gi|87298939 hypothetical protein LOC131831 [Homo sapiens]              30   1.3  
gi|26051258 RAS guanyl releasing protein 4 isoform a [Homo sapiens]    30   2.3  
gi|226246586 RAS guanyl releasing protein 4 isoform g [Homo sapi...    30   2.3  
gi|226246584 RAS guanyl releasing protein 4 isoform f [Homo sapi...    30   2.3  
gi|226246581 RAS guanyl releasing protein 4 isoform e [Homo sapi...    30   2.3  
gi|226246579 RAS guanyl releasing protein 4 isoform d [Homo sapi...    30   2.3  
gi|226246577 RAS guanyl releasing protein 4 isoform c [Homo sapi...    30   2.3  
gi|226246575 RAS guanyl releasing protein 4 isoform b [Homo sapi...    30   2.3  
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]            30   2.3  
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [...    30   2.3  
gi|239755820 PREDICTED: similar to keratin 86, partial [Homo sap...    29   3.0  
gi|89886468 fibronectin type III and SPRY domain containing 1-li...    29   3.0  
gi|13994289 fibronectin type III and SPRY domain containing 1-li...    29   3.0  
gi|209862789 microtubule associated monoxygenase, calponin and L...    29   3.0  
gi|57863271 hypothetical protein LOC23078 isoform a [Homo sapiens]     29   3.0  
gi|219842266 usherin isoform B [Homo sapiens]                          29   3.9  
gi|4504063 golgin 97 [Homo sapiens]                                    29   3.9  
gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]       29   3.9  

>gi|237858698 RPA interacting protein isoform a [Homo sapiens]
          Length = 231

 Score =  473 bits (1217), Expect = e-134
 Identities = 231/231 (100%), Positives = 231/231 (100%)

Query: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
           MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60

Query: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120
           VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE
Sbjct: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120

Query: 121 KCLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSHSSELTEQKLRACLEGSI 180
           KCLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSHSSELTEQKLRACLEGSI
Sbjct: 121 KCLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSHSSELTEQKLRACLEGSI 180

Query: 181 NEHSAHCPHTPEFSVTGGTEEKSSLLMSCLVSVSWDPLCGKRDLWLVLFPP 231
           NEHSAHCPHTPEFSVTGGTEEKSSLLMSCLVSVSWDPLCGKRDLWLVLFPP
Sbjct: 181 NEHSAHCPHTPEFSVTGGTEEKSSLLMSCLVSVSWDPLCGKRDLWLVLFPP 231


>gi|237858695 RPA interacting protein isoform b [Homo sapiens]
          Length = 219

 Score =  429 bits (1103), Expect = e-120
 Identities = 211/215 (98%), Positives = 212/215 (98%)

Query: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
           MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60

Query: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120
           VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE
Sbjct: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120

Query: 121 KCLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSHSSELTEQKLRACLEGSI 180
           KCLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSHSSELTEQKLRACLEGSI
Sbjct: 121 KCLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSHSSELTEQKLRACLEGSI 180

Query: 181 NEHSAHCPHTPEFSVTGGTEEKSSLLMSCLVSVSW 215
           NEHSAHCPHTPEFSVTGGTEEKSSLLMSCL   +W
Sbjct: 181 NEHSAHCPHTPEFSVTGGTEEKSSLLMSCLACDTW 215


>gi|237858701 RPA interacting protein isoform c [Homo sapiens]
          Length = 172

 Score =  332 bits (850), Expect = 2e-91
 Identities = 163/166 (98%), Positives = 165/166 (99%)

Query: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
           MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60

Query: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120
           VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE
Sbjct: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120

Query: 121 KCLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSHSSE 166
           KCLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSH+ +
Sbjct: 121 KCLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSHACD 166


>gi|237858765 RPA interacting protein isoform e [Homo sapiens]
          Length = 148

 Score =  287 bits (735), Expect = 5e-78
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
           MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60

Query: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120
           VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE
Sbjct: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDE 120

Query: 121 KCLSIMLAEWEANPLICPVCTK 142
           KCLSIMLAEWEANPLICPVCTK
Sbjct: 121 KCLSIMLAEWEANPLICPVCTK 142


>gi|237858768 RPA interacting protein isoform f [Homo sapiens]
          Length = 106

 Score =  209 bits (533), Expect = 1e-54
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
           MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60

Query: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
           VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104


>gi|237858705 RPA interacting protein isoform d [Homo sapiens]
          Length = 106

 Score =  209 bits (533), Expect = 1e-54
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60
           MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL
Sbjct: 1   MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFL 60

Query: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104
           VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ
Sbjct: 61  VQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQ 104


>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
            sapiens]
          Length = 2715

 Score = 35.4 bits (80), Expect = 0.042
 Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 16/108 (14%)

Query: 43   RYRQAGSSGPGN-----SQNSFLVQEVMEEEWNAL-QSVENCPEDLAQLEELIDMAVLEE 96
            +++++G+  PGN       NS L + +   + +   +S+EN PE+L ++E   D   L +
Sbjct: 1617 QHKRSGTQAPGNLCCLYQTNSKLYESLTYSQMSRTSESLENEPENLVRVESRDDHLSLPD 1676

Query: 97   IQQE----------LINQEQSIISEYEKSLQFDEKCLSIMLAEWEANP 134
            +  E           IN ++S++ E  +S+ + +K LS   + ++ +P
Sbjct: 1677 VTCENFISKVQDVISINHDESLLPESLESMMYGKKVLSQEPSSFQESP 1724


>gi|50980301 myosin phosphatase-Rho interacting protein isoform 2
           [Homo sapiens]
          Length = 1025

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 27  QRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLE 86
           QR LE++R  +DRLL     A  S     +N+   +   E E +    + +   D+    
Sbjct: 747 QRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQRSQISSVNSDV---- 802

Query: 87  ELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEKCL 123
           E +    LEE+Q   + +E  ++SE     Q+ +KCL
Sbjct: 803 EALRRQYLEELQS--VQRELEVLSE-----QYSQKCL 832


>gi|50980307 myosin phosphatase-Rho interacting protein isoform 1
           [Homo sapiens]
          Length = 1038

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 27  QRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLE 86
           QR LE++R  +DRLL     A  S     +N+   +   E E +    + +   D+    
Sbjct: 747 QRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQRSQISSVNSDV---- 802

Query: 87  ELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEKCL 123
           E +    LEE+Q   + +E  ++SE     Q+ +KCL
Sbjct: 803 EALRRQYLEELQS--VQRELEVLSE-----QYSQKCL 832


>gi|157743243 phospholipase A2, group IIC [Homo sapiens]
          Length = 150

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 18/88 (20%)

Query: 138 PVCTKYNLRITSGVVVCQCGLSIPSHSSELTEQKLRACLEGSINEHSAHCPHTPEFSVTG 197
           PV   Y   I +G VVC C L  P  S      +L+AC     ++ S HC     F  + 
Sbjct: 80  PVLNSYQFHIVNGAVVCGCTLG-PGASCHC---RLKAC---ECDKQSVHC-----FKESL 127

Query: 198 GTEEKSSLLMSCLVSVSWDPLCGKRDLW 225
            T EK+          S  P CG+   W
Sbjct: 128 PTYEKN------FKQFSSQPRCGRHKPW 149


>gi|71061468 centromere protein E [Homo sapiens]
          Length = 2701

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 15/125 (12%)

Query: 22   KEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPED 81
            KE    R  +R+    ++L  + +Q         Q    VQE M E    +  +EN   +
Sbjct: 1111 KEGELSRTCDRLAEVEEKLKEKSQQLQEK----QQQLLNVQEEMSEMQKKINEIENLKNE 1166

Query: 82   LAQLEELIDMAVLE--EIQQEL---------INQEQSIISEYEKSLQFDEKCLSIMLAEW 130
            L   E  ++    E  E+ Q+L         I +E+ ++ E +KS + +   L   + E 
Sbjct: 1167 LKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREI 1226

Query: 131  EANPL 135
            EA  L
Sbjct: 1227 EATGL 1231


>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
          Length = 485

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 73  QSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSII-SEY---EKSLQFDEKCLSIMLA 128
           Q+ E   +  AQ EE     VL  +   L N+ Q II SEY     +L       S  + 
Sbjct: 374 QTKEEKEKMQAQKEE-----VLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCIN 428

Query: 129 EWEANPLICPVCTKYNLRITSGVVVCQC-GLSIPSHSSELTEQKL 172
           EW    + CP+C K     T  +V+  C    + + SSE+ E+++
Sbjct: 429 EWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRI 473


>gi|87298939 hypothetical protein LOC131831 [Homo sapiens]
          Length = 663

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 47  AGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQ 106
           +G   PG        +E+ EEE    + VE   E++ + EE ++    E +++EL+ +EQ
Sbjct: 8   SGFGDPGKKDQKESEEELEEEEEE--EEVEEEEEEVEEEEEEVEEEEEEVVEEELVGEEQ 65

Query: 107 SI 108
            +
Sbjct: 66  EL 67


>gi|26051258 RAS guanyl releasing protein 4 isoform a [Homo sapiens]
          Length = 673

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 134 PLICPVCTKYNLRITSGVVVC-QCGLSIPSHSSELT--EQKLRACLEGSINEHSAHCPHT 190
           P  C  C+ +   +T     C +CGL    H  +    E K R   +G      A  P T
Sbjct: 551 PTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVECKKRPGAKGDAGPPGAPVPST 610

Query: 191 PEFSVTGGTEEKSSLLMS 208
           P    + G+EE  S  +S
Sbjct: 611 PAPHASCGSEENHSYTLS 628


>gi|226246586 RAS guanyl releasing protein 4 isoform g [Homo
           sapiens]
          Length = 576

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 134 PLICPVCTKYNLRITSGVVVC-QCGLSIPSHSSELT--EQKLRACLEGSINEHSAHCPHT 190
           P  C  C+ +   +T     C +CGL    H  +    E K R   +G      A  P T
Sbjct: 454 PTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVECKKRPGAKGDAGPPGAPVPST 513

Query: 191 PEFSVTGGTEEKSSLLMS 208
           P    + G+EE  S  +S
Sbjct: 514 PAPHASCGSEENHSYTLS 531


>gi|226246584 RAS guanyl releasing protein 4 isoform f [Homo
           sapiens]
          Length = 484

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 134 PLICPVCTKYNLRITSGVVVC-QCGLSIPSHSSELT--EQKLRACLEGSINEHSAHCPHT 190
           P  C  C+ +   +T     C +CGL    H  +    E K R   +G      A  P T
Sbjct: 362 PTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVECKKRPGAKGDAGPPGAPVPST 421

Query: 191 PEFSVTGGTEEKSSLLMS 208
           P    + G+EE  S  +S
Sbjct: 422 PAPHASCGSEENHSYTLS 439


>gi|226246581 RAS guanyl releasing protein 4 isoform e [Homo
           sapiens]
          Length = 639

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 134 PLICPVCTKYNLRITSGVVVC-QCGLSIPSHSSELT--EQKLRACLEGSINEHSAHCPHT 190
           P  C  C+ +   +T     C +CGL    H  +    E K R   +G      A  P T
Sbjct: 517 PTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVECKKRPGAKGDAGPPGAPVPST 576

Query: 191 PEFSVTGGTEEKSSLLMS 208
           P    + G+EE  S  +S
Sbjct: 577 PAPHASCGSEENHSYTLS 594


>gi|226246579 RAS guanyl releasing protein 4 isoform d [Homo
           sapiens]
          Length = 604

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 134 PLICPVCTKYNLRITSGVVVC-QCGLSIPSHSSELT--EQKLRACLEGSINEHSAHCPHT 190
           P  C  C+ +   +T     C +CGL    H  +    E K R   +G      A  P T
Sbjct: 482 PTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVECKKRPGAKGDAGPPGAPVPST 541

Query: 191 PEFSVTGGTEEKSSLLMS 208
           P    + G+EE  S  +S
Sbjct: 542 PAPHASCGSEENHSYTLS 559


>gi|226246577 RAS guanyl releasing protein 4 isoform c [Homo
           sapiens]
          Length = 581

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 134 PLICPVCTKYNLRITSGVVVC-QCGLSIPSHSSELT--EQKLRACLEGSINEHSAHCPHT 190
           P  C  C+ +   +T     C +CGL    H  +    E K R   +G      A  P T
Sbjct: 459 PTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVECKKRPGAKGDAGPPGAPVPST 518

Query: 191 PEFSVTGGTEEKSSLLMS 208
           P    + G+EE  S  +S
Sbjct: 519 PAPHASCGSEENHSYTLS 536


>gi|226246575 RAS guanyl releasing protein 4 isoform b [Homo
           sapiens]
          Length = 659

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 134 PLICPVCTKYNLRITSGVVVC-QCGLSIPSHSSELT--EQKLRACLEGSINEHSAHCPHT 190
           P  C  C+ +   +T     C +CGL    H  +    E K R   +G      A  P T
Sbjct: 537 PTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVECKKRPGAKGDAGPPGAPVPST 596

Query: 191 PEFSVTGGTEEKSSLLMS 208
           P    + G+EE  S  +S
Sbjct: 597 PAPHASCGSEENHSYTLS 614


>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 523

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 31  ERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELID 90
           ER+R   +RL  + +  G           L QE  +EE   L   E     L ++EEL++
Sbjct: 318 ERLREQEERLCEQEKLPGQERLLEEVEKLLEQERRQEEQERLLERERL---LEEVEELLE 374

Query: 91  MAVL----EEIQQELINQEQSIISEYEKSLQFDEKCLSIMLAE 129
              L    E + Q+   QE   + E E+ L+   + L    AE
Sbjct: 375 QERLRQQDERLWQQETLQELERLRELERMLELGWEALYEQRAE 417


>gi|121583542 mitogen-activated protein kinase kinase kinase 15
           [Homo sapiens]
          Length = 788

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 19/132 (14%)

Query: 3   ESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQ 62
           E  R+PR  L  L+  P    A   R L      RD+ L   R+       +S+   ++ 
Sbjct: 439 ERTRAPRHHLGHLLSVPDESSALEDRGLASSPEDRDQGLFLLRK-------DSERRAILY 491

Query: 63  EVMEEEWNALQSVENCPEDLAQLEELIDMAV-----LEEIQQELINQEQ-----SIISEY 112
           +++ EE N  Q   N  E +AQ  E + ++V     +  I ++ I   +     + IS+ 
Sbjct: 492 KILWEEQN--QVASNLQECVAQSSEELHLSVGHIKQIIGILRDFIRSPEHRVMATTISKL 549

Query: 113 EKSLQFDEKCLS 124
           +  L FD   +S
Sbjct: 550 KVDLDFDSSSIS 561


>gi|239755820 PREDICTED: similar to keratin 86, partial [Homo
           sapiens]
          Length = 238

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 21/155 (13%)

Query: 52  PGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELI-----DMAVLEEIQQELINQEQ 106
           P  SQNS L   V + E     ++ +    LA+LE  +     DMA L    QE++N + 
Sbjct: 2   PPTSQNSKLEAAVAQSEQQGEAALSDARCKLAELEGALQKAKQDMACLIREYQEVMNSKL 61

Query: 107 SI---ISEYEKSLQFDEKCLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSH 163
            +   I+ Y + L+ +E+ L             C      N+ ++S      CG    S 
Sbjct: 62  GLDIEIATYRRLLEGEEQRL-------------CEGVEAVNVCVSSSRGGVVCGDLCVSG 108

Query: 164 SSELTEQKLRACLEGSINEHSAHCPHTPEFSVTGG 198
           S  +T     A   G++   +  C    + + T G
Sbjct: 109 SRPVTGSVCSAPCNGNLVVSTGLCKPCGQLNTTCG 143


>gi|89886468 fibronectin type III and SPRY domain containing 1-like
           isoform 1 [Homo sapiens]
          Length = 498

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 22  KEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSV-ENCPE 80
           KEA  QR +  + N  D + N       +  G  +NS  +   ++EE+++L S+ +   E
Sbjct: 5   KEAL-QRIISTLANKNDEIQNFIDTLHHTLKGVQENSSNILSELDEEFDSLYSILDEVKE 63

Query: 81  DLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEKCLSI 125
            +    +       +E+Q + I+Q  + +   E+ L+F  + L I
Sbjct: 64  SMINCIKQEQARKSQELQSQ-ISQCNNALENSEELLEFATRSLDI 107


>gi|13994289 fibronectin type III and SPRY domain containing 1-like
           isoform 2 [Homo sapiens]
          Length = 145

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 22  KEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSV-ENCPE 80
           KEA  QR +  + N  D + N       +  G  +NS  +   ++EE+++L S+ +   E
Sbjct: 5   KEAL-QRIISTLANKNDEIQNFIDTLHHTLKGVQENSSNILSELDEEFDSLYSILDEVKE 63

Query: 81  DLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEKCLSI 125
            +    +       +E+Q + I+Q  + +   E+ L+F  + L I
Sbjct: 64  SMINCIKQEQARKSQELQSQ-ISQCNNALENSEELLEFATRSLDI 107


>gi|209862789 microtubule associated monoxygenase, calponin and LIM
            domain containing 3 isoform 1 [Homo sapiens]
          Length = 2002

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 16   VGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEE 68
            +G  PWKEA R   L + ++  +        + S GPGN +     +E  EEE
Sbjct: 958  LGGVPWKEAVRIHALLKGKSEEE-----LEASKSFGPGNEEEEEEEEEYEEEE 1005


>gi|57863271 hypothetical protein LOC23078 isoform a [Homo sapiens]
          Length = 1905

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 101  LIN-QEQSIISEYEKSLQFDEKCLSIMLAEWEANPLICPVCTKY-NLRITSGVVVC 154
            LIN QE  I    E+SL F E+C S  +   E N +IC + T + N + T  VV C
Sbjct: 1079 LINIQEYPIERHEERSLNFTEECASWRIPLDEIN-IICDIATSHENEQNTLYVVTC 1133


>gi|219842266 usherin isoform B [Homo sapiens]
          Length = 5202

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 10/103 (9%)

Query: 124  SIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSHSSELTEQ---------KLRA 174
            SI +A      LI  +  +YN+ +  G V      S+  H S L E          +++A
Sbjct: 3788 SIFVAWIPPGILIPEIPVEYNVLLNDGSVT-PLAFSVGHHQSTLLENLTPFTQYEIRIQA 3846

Query: 175  CLEGSINEHSAHCPHTPEFSVTGGTEEKSSLLMSCLVSVSWDP 217
            C  GS    S     TPE +           L S  + + W P
Sbjct: 3847 CQNGSCGVSSRMFVKTPEAAPMDLNSPVLKALGSACIEIKWMP 3889


>gi|4504063 golgin 97 [Homo sapiens]
          Length = 767

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 7/112 (6%)

Query: 31  ERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEEL-- 88
           E+++ S+  +  +  Q       N ++S + Q+ +  E   L+  +     +  LE    
Sbjct: 368 EQLQQSKGIVAAQETQIQELAAANQESSHVQQQALALEQQFLERTQALEAQIVALERTRA 427

Query: 89  IDMAVLEEIQQELINQEQSII----SEYEKSLQFDEKCLSIMLAEWEANPLI 136
            D    E+  ++L  QE + +    +EYE+SLQ  +  L  +  EW    ++
Sbjct: 428 ADQTTAEQGMRQL-EQENAALKECRNEYERSLQNHQFELKKLKEEWSQREIV 478


>gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]
          Length = 965

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 62  QEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEK 121
           QEV+++E   + S  +    L +LE+LID  ++ E      +     + +  + L+ +E+
Sbjct: 311 QEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFSTYSHSDLNRPLEDDCQVLE-EER 369

Query: 122 CLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSHSSEL 167
            +S++    +   L         + IT+  ++ QC ++  S + E+
Sbjct: 370 LISLVFGLLKQRKLNFLEIYGEKMVITAKNIIKQCVINKVSQTEEI 415


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,585,386
Number of Sequences: 37866
Number of extensions: 408881
Number of successful extensions: 1613
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1588
Number of HSP's gapped (non-prelim): 83
length of query: 231
length of database: 18,247,518
effective HSP length: 99
effective length of query: 132
effective length of database: 14,498,784
effective search space: 1913839488
effective search space used: 1913839488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.