Search of human proteins with 23510368

Search of human proteins with 23510368

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23510368 homeobox D11 [Homo sapiens]
         (338 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|23510368 homeobox D11 [Homo sapiens]                               709   0.0  
gi|5031759 homeobox A11 [Homo sapiens]                                269   3e-72
gi|7657166 homeobox C11 [Homo sapiens]                                231   9e-61
gi|182765442 homeobox A10 isoform a [Homo sapiens]                    122   3e-28
gi|194363768 homeobox D9 [Homo sapiens]                               115   7e-26
gi|15029506 homeobox D8 [Homo sapiens]                                112   6e-25
gi|15029508 homeobox B9 [Homo sapiens]                                108   9e-24
gi|84570137 homeobox B3 [Homo sapiens]                                107   2e-23
gi|24497533 homeobox C10 [Homo sapiens]                               105   6e-23
gi|24497551 homeobox A10 isoform b [Homo sapiens]                     105   8e-23
gi|194353946 homeobox D12 [Homo sapiens]                              103   2e-22
gi|23097236 homeobox A9 [Homo sapiens]                                103   3e-22
gi|23510366 homeobox D10 [Homo sapiens]                               102   6e-22
gi|24497547 homeobox C9 [Homo sapiens]                                 99   4e-21
gi|148613882 homeobox A4 [Homo sapiens]                                98   9e-21
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]             98   1e-20
gi|27804315 homeobox C12 [Homo sapiens]                                98   1e-20
gi|116734702 homeobox D13 [Homo sapiens]                               96   5e-20
gi|24497554 homeobox A13 [Homo sapiens]                                96   5e-20
gi|4504465 homeobox B2 [Homo sapiens]                                  94   2e-19
gi|24497536 homeobox C13 [Homo sapiens]                                93   3e-19
gi|19923391 homeobox D3 [Homo sapiens]                                 89   7e-18
gi|24497513 homeobox A3 isoform a [Homo sapiens]                       89   7e-18
gi|13562112 homeobox A3 isoform a [Homo sapiens]                       89   7e-18
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]           88   1e-17
gi|13273315 homeobox B4 [Homo sapiens]                                 86   5e-17
gi|24497517 homeobox A5 [Homo sapiens]                                 85   8e-17
gi|121114296 caudal type homeobox 1 [Homo sapiens]                     85   1e-16
gi|23503237 homeobox B6 [Homo sapiens]                                 83   3e-16
gi|23397672 homeobox D4 [Homo sapiens]                                 82   5e-16

>gi|23510368 homeobox D11 [Homo sapiens]
          Length = 338

 Score =  709 bits (1830), Expect = 0.0
 Identities = 338/338 (100%), Positives = 338/338 (100%)

Query: 1   MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVRE 60
           MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVRE
Sbjct: 1   MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVRE 60

Query: 61  VAFRDYGLERAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAA 120
           VAFRDYGLERAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAA
Sbjct: 61  VAFRDYGLERAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAA 120

Query: 121 EEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQ 180
           EEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQ
Sbjct: 121 EEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQ 180

Query: 181 FYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEG 240
           FYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEG
Sbjct: 181 FYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEG 240

Query: 241 SGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLS 300
           SGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLS
Sbjct: 241 SGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLS 300

Query: 301 RMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF 338
           RMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF
Sbjct: 301 RMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF 338


>gi|5031759 homeobox A11 [Homo sapiens]
          Length = 313

 Score =  269 bits (687), Expect = 3e-72
 Identities = 168/352 (47%), Positives = 192/352 (54%), Gaps = 58/352 (16%)

Query: 3   DFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQ-PSSCQMTFPYSSNLAPHVQPVREV 61
           DFDE G  +++MYLP C YYV+  DF+S PSFL Q PSS  MT+ YSSNL P VQPVREV
Sbjct: 2   DFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNL-PQVQPVREV 60

Query: 62  AFRDYGLERA-KWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAA 120
            FR+Y +E A KW  RG                                     A   +A
Sbjct: 61  TFREYAIEPATKWHPRGN-----------------------------------LAHCYSA 85

Query: 121 EEAAMQRELLPP--AGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGF 178
           EE   +  L  P  AG   DVL K+   V   P P       +SNFYS VGRNG+LPQ F
Sbjct: 86  EELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTP-----AVSSNFYSTVGRNGVLPQAF 140

Query: 179 DQFYEAA------------PGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAG-GGGGSPC 225
           DQF+E A            PG   A   PP   A      AA  G P T +   GGG  C
Sbjct: 141 DQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGC 200

Query: 226 TKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREF 285
            +    +E K                   E  +   + QR+RKKRCPYTKYQIRELEREF
Sbjct: 201 RETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREF 260

Query: 286 FFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPL 337
           FF+VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK+NRDRLQY++ NPL
Sbjct: 261 FFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPL 312


>gi|7657166 homeobox C11 [Homo sapiens]
          Length = 304

 Score =  231 bits (588), Expect = 9e-61
 Identities = 150/338 (44%), Positives = 189/338 (55%), Gaps = 58/338 (17%)

Query: 3   DFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVREVA 62
           DF E G  A+++YLP C YY+   +F++  SFL Q  S Q+++PYS+     V PVREV+
Sbjct: 21  DFGERGSCASNLYLPSCTYYMP--EFSTVSSFLPQAPSRQISYPYSAQ----VPPVREVS 74

Query: 63  FRDYGLERA-KWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAE 121
              YGLE + KW +R                          Y+  YAAA           
Sbjct: 75  ---YGLEPSGKWHHRNS------------------------YSSCYAAA----------- 96

Query: 122 EAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQF 181
           +  M RE LPP+    ++L K  E        P  P    + FYS+V +N +LPQ FD+F
Sbjct: 97  DELMHRECLPPS-TVTEILMKN-EGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRF 154

Query: 182 YEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEGS 241
           ++ A    + G   PP   P   +G A KG+P      G  S   +A  G+E +   E +
Sbjct: 155 FDNA----YCGGGDPPAEPPCSGKGEA-KGEPEAPPASGLAS---RAEAGAEAEAEEENT 206

Query: 242 GGDGEGPPGEAGAEKSSSAV--APQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQL 299
                G       E +  A   AP R+RKKRCPY+K+QIRELEREFFFNVYINKEKRLQL
Sbjct: 207 NPSSSGSAHSVAKEPAKGAAPNAP-RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQL 265

Query: 300 SRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPL 337
           SRMLNLTDRQVKIWFQNRRMKEKKL+RDRLQYF+GNPL
Sbjct: 266 SRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPL 303


>gi|182765442 homeobox A10 isoform a [Homo sapiens]
          Length = 410

 Score =  122 bits (307), Expect = 3e-28
 Identities = 112/340 (32%), Positives = 141/340 (41%), Gaps = 76/340 (22%)

Query: 66  YGLERAK-WPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAP-----YYAAAAAAAAAAAA 119
           YGL+    +P  GG    +A  GS GGG GG G GA GY P     +  A  +       
Sbjct: 73  YGLQSCGLFPTLGGKRNEAASPGSGGGG-GGLGPGAHGYGPSPIDLWLDAPRSCRMEPPD 131

Query: 120 AEEAAMQRELLPP------------------------------AGRRPDVLFKAPEPVCA 149
                 Q++  PP                              A + P V   A E    
Sbjct: 132 GPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPF 191

Query: 150 APGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAG---PQPPPPPAPPQPEG 206
             GPP  P G A    S V   G       Q Y  A G    G    Q    P P QP G
Sbjct: 192 PRGPP--PDGCALGTSSGVPVPGYFR--LSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPG 247

Query: 207 AADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKS--------- 257
                 P   +G    +   +A     P   A GSGG  +G   EA A  S         
Sbjct: 248 RGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDE-EAHASSSAAEELSPAP 306

Query: 258 --SSAVAPQRS-------------------RKKRCPYTKYQIRELEREFFFNVYINKEKR 296
             SS  +P++                    RKKRCPYTK+Q  ELE+EF FN+Y+ +E+R
Sbjct: 307 SESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERR 366

Query: 297 LQLSRMLNLTDRQVKIWFQNRRMKEKKLNRD-RLQYFTGN 335
           L++SR ++LTDRQVKIWFQNRRMK KK+NR+ R++  T N
Sbjct: 367 LEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTAN 406



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 43/131 (32%), Positives = 51/131 (38%), Gaps = 25/131 (19%)

Query: 83  SAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFK 142
           S+G G +GGG GG GGG GG   YYA        AA          L P  G + +    
Sbjct: 36  SSGRGEAGGGGGGAGGGGGG--GYYAHGGVYLPPAADLPYGLQSCGLFPTLGGKRN---- 89

Query: 143 APEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPG---------PPFAGP 193
                 A+PG   G  G         G +G  P   D + +A            PP    
Sbjct: 90  ----EAASPGSGGGGGGLGP------GAHGYGPSPIDLWLDAPRSCRMEPPDGPPPPPQQ 139

Query: 194 QPPPPPAPPQP 204
           QPPPPP PPQP
Sbjct: 140 QPPPPPQPPQP 150


>gi|194363768 homeobox D9 [Homo sapiens]
          Length = 352

 Score =  115 bits (287), Expect = 7e-26
 Identities = 97/338 (28%), Positives = 139/338 (41%), Gaps = 62/338 (18%)

Query: 8   GQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVREVAFR-DY 66
           G +A +     C++  AP       S+ + PS        S    P+V P    A   + 
Sbjct: 55  GPAATAAEFASCSF--APRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEP 112

Query: 67  GLERAKW--PYRGGGGGGSAGGGSSGGGPGGG------GGGAGGYAPYYAAAAAAAAAAA 118
           G     W  P  G  GG   GGG  GGGPG G      G   G +        AA A A 
Sbjct: 113 GRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPAT 172

Query: 119 AAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGF 178
           AA   +     L  + +R +         C+      G +G   +  S +          
Sbjct: 173 AASTTSSSSTSLSSSSKRTE---------CSVARESQGSSGPEFSCNSFL---------- 213

Query: 179 DQFYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAG-----GGGGSPCTKATPGSE 233
                                   Q + AA  G    GAG     G GGS    A     
Sbjct: 214 ------------------------QEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHP 249

Query: 234 PKGAAEGSGGDGEGPPGEAGAEKSSSA---VAPQRSRKKRCPYTKYQIRELEREFFFNVY 290
             G +          P +   + ++ A   +  + +RKKRCPYTKYQ  ELE+EF FN+Y
Sbjct: 250 IPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMY 309

Query: 291 INKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDR 328
           + +++R +++R+LNLT+RQVKIWFQNRRMK KK+++++
Sbjct: 310 LTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 347


>gi|15029506 homeobox D8 [Homo sapiens]
          Length = 290

 Score =  112 bits (279), Expect = 6e-25
 Identities = 90/251 (35%), Positives = 115/251 (45%), Gaps = 32/251 (12%)

Query: 103 YAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVC-AAPGPPHGPAGAA 161
           Y+ Y AAAAAAAAA  A           P  G R      A +    +A G PH P  A 
Sbjct: 10  YSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGFPHAPPQAH 69

Query: 162 SNFY-----SAVGRNGILPQGFDQF----------YEAAPGPPFAGPQPPPPPAPPQPEG 206
           ++ +     S  G  G   +G + F          Y+AAP PP   P PPPPP PP   G
Sbjct: 70  AHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPP---PHPPPPPPPPPCGG 126

Query: 207 AADKGDPRTGAGGGGGSPCTKATPGSEPK-----GAAEGSGGDGEGPPGEAGAEKSSSA- 260
            A  G+P    G          T   E +          SG  GE P     +   S   
Sbjct: 127 IACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMF 186

Query: 261 ------VAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWF 314
                  AP R R+ R  Y+++Q  ELE+EF FN Y+ +++R+++S  L LT+RQVKIWF
Sbjct: 187 PWMRPQAAPGR-RRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWF 245

Query: 315 QNRRMKEKKLN 325
           QNRRMK KK N
Sbjct: 246 QNRRMKWKKEN 256


>gi|15029508 homeobox B9 [Homo sapiens]
          Length = 250

 Score =  108 bits (269), Expect = 9e-24
 Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 22/207 (10%)

Query: 137 PDVLFKAPEPVCAA---PGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGP 193
           P   F+   PV  A   P  PH      S ++  +   G+ P       E+     +  P
Sbjct: 48  PSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQPQGVPPA------ESRYLRTWLEP 101

Query: 194 QPPPPPAPPQPEGAADKGDPRTGAGGG---GGSP--CTKATPGSEPKGAAEGSG-GDGEG 247
            P    AP Q + AA K +P  GA G     G+P    + + G E   + +  G GD + 
Sbjct: 102 APRGEAAPGQGQ-AAVKAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKI 160

Query: 248 PPGEAGAEK------SSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSR 301
             G    E+      S++ +  + SRKKRCPYTKYQ  ELE+EF FN+Y+ +++R +++R
Sbjct: 161 CEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVAR 220

Query: 302 MLNLTDRQVKIWFQNRRMKEKKLNRDR 328
           +LNL++RQVKIWFQNRRMK KK+N+++
Sbjct: 221 LLNLSERQVKIWFQNRRMKMKKMNKEQ 247


>gi|84570137 homeobox B3 [Homo sapiens]
          Length = 431

 Score =  107 bits (267), Expect = 2e-23
 Identities = 91/271 (33%), Positives = 118/271 (43%), Gaps = 47/271 (17%)

Query: 72  KWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAA---------AAAAAAAAAAAEE 122
           K  Y         GG SS  G  G G       P+ AA         +A +  +   A  
Sbjct: 3   KATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNAAP 62

Query: 123 AAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFY 182
            A  +EL      RP +   APEP+ A PG P  P  AA    ++   NG  P       
Sbjct: 63  HAKSKELNGSC-MRPGL---APEPLSAPPGSP--PPSAAPTSATSNSSNGGGP------- 109

Query: 183 EAAPGPPFAGP--------QPPPPPAPPQPEGAADKGDPRT--GAGGGGGSPCTKATPGS 232
            +  GPP  GP        Q  P     +         P T  G GGGGG          
Sbjct: 110 -SKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGG--------- 159

Query: 233 EPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYIN 292
              G   GSGG G G  G  G +KS    A   S++ R  YT  Q+ ELE+EF FN Y+ 
Sbjct: 160 ---GGGGGSGGSGGGGGGGGGGDKSPPGSAA--SKRARTAYTSAQLVELEKEFHFNRYLC 214

Query: 293 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 323
           + +R++++ +LNL++RQ+KIWFQNRRMK KK
Sbjct: 215 RPRRVEMANLLNLSERQIKIWFQNRRMKYKK 245


>gi|24497533 homeobox C10 [Homo sapiens]
          Length = 342

 Score =  105 bits (262), Expect = 6e-23
 Identities = 53/115 (46%), Positives = 75/115 (65%), Gaps = 6/115 (5%)

Query: 227 KATPGSEPKGAAEGSGGDGEGPPGEAGAE-----KSSSAVAPQRSRKKRCPYTKYQIREL 281
           K +P    K  A+ +    +    EA  E      + + +  +  RKKRCPYTK+Q  EL
Sbjct: 224 KGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLEL 283

Query: 282 EREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRD-RLQYFTGN 335
           E+EF FN+Y+ +E+RL++S+ +NLTDRQVKIWFQNRRMK KK+NR+ R++  T N
Sbjct: 284 EKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSN 338


>gi|24497551 homeobox A10 isoform b [Homo sapiens]
          Length = 94

 Score =  105 bits (261), Expect = 8e-23
 Identities = 48/87 (55%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 250 GEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQ 309
           G +  E +++ +  +  RKKRCPYTK+Q  ELE+EF FN+Y+ +E+RL++SR ++LTDRQ
Sbjct: 4   GNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 63

Query: 310 VKIWFQNRRMKEKKLNRD-RLQYFTGN 335
           VKIWFQNRRMK KK+NR+ R++  T N
Sbjct: 64  VKIWFQNRRMKLKKMNRENRIRELTAN 90


>gi|194353946 homeobox D12 [Homo sapiens]
          Length = 270

 Score =  103 bits (258), Expect = 2e-22
 Identities = 89/232 (38%), Positives = 110/232 (47%), Gaps = 39/232 (16%)

Query: 126 QRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPA---GAASNFYSAVGRNGILP------- 175
           Q   LPP       L  A  P   AP  P G     G +  + +  G  G+ P       
Sbjct: 35  QLAALPPISYPRGALPWAATPASCAPAQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGP 94

Query: 176 QGFDQFY--EAAPGPPFAGPQPPP--PPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPG 231
           +   +FY  EAA GP   G   P   P +   P  AA K      AG G      +ATPG
Sbjct: 95  EEQAKFYAPEAAAGPEERGRTRPSFAPESSLAPAVAALKAAKYDYAGVG------RATPG 148

Query: 232 SEP--KGA--AEGSGGDGEGP---------PGEAGAEKSSS------AVAPQRSRKKRCP 272
           S    +GA  A G   D +GP          G A   + S         AP R+RKKR P
Sbjct: 149 STTLLQGAPCAPGFKDDTKGPLNLNMTVQAAGVASCLRPSLPDGLPWGAAPGRARKKRKP 208

Query: 273 YTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 324
           YTK QI ELE EF  N +IN++KR +LS  LNL+D+QVKIWFQNRRMK+K++
Sbjct: 209 YTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 260


>gi|23097236 homeobox A9 [Homo sapiens]
          Length = 272

 Score =  103 bits (256), Expect = 3e-22
 Identities = 49/98 (50%), Positives = 73/98 (74%), Gaps = 2/98 (2%)

Query: 231 GSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVY 290
           G+  +  AE   G G+ PP +     +++ +  + +RKKRCPYTK+Q  ELE+EF FN+Y
Sbjct: 173 GAFSENNAENESG-GDKPPIDPN-NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMY 230

Query: 291 INKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDR 328
           + +++R +++R+LNLT+RQVKIWFQNRRMK KK+N+DR
Sbjct: 231 LTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268


>gi|23510366 homeobox D10 [Homo sapiens]
          Length = 340

 Score =  102 bits (253), Expect = 6e-22
 Identities = 47/83 (56%), Positives = 66/83 (79%), Gaps = 1/83 (1%)

Query: 257 SSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQN 316
           +S+ +  +  RKKRCPYTK+Q  ELE+EF FN+Y+ +E+RL++S+ +NLTDRQVKIWFQN
Sbjct: 257 TSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQN 316

Query: 317 RRMKEKKLNRD-RLQYFTGNPLF 338
           RRMK KK++R+ R++  T N  F
Sbjct: 317 RRMKLKKMSRENRIRELTANLTF 339


>gi|24497547 homeobox C9 [Homo sapiens]
          Length = 260

 Score = 99.4 bits (246), Expect = 4e-21
 Identities = 41/63 (65%), Positives = 57/63 (90%)

Query: 266 SRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLN 325
           +RKKRCPYTKYQ  ELE+EF FN+Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KK+N
Sbjct: 192 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMN 251

Query: 326 RDR 328
           +++
Sbjct: 252 KEK 254


>gi|148613882 homeobox A4 [Homo sapiens]
          Length = 320

 Score = 98.2 bits (243), Expect = 9e-21
 Identities = 86/260 (33%), Positives = 112/260 (43%), Gaps = 41/260 (15%)

Query: 89  SGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAG--RRPDVLFKAP-- 144
           SGG  GG GGG G   P           A   +   +Q+  LP AG  R P   + AP  
Sbjct: 29  SGGADGGPGGGPGYQQP----------PAPPTQHLPLQQPQLPHAGGGREPTASYYAPRT 78

Query: 145 --EPV--CAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFA-------GP 193
             EP    AA  P HG A  A  +    G +   P   +Q    A GP           P
Sbjct: 79  AREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQP 138

Query: 194 QPPPP----PAPPQPEGAADKGDPRTGAGGGGGSP-CTKATPGSEPKGAAEGSGGDGEGP 248
           Q PPP      PP      +      G   GG +P C        P G        G+ P
Sbjct: 139 QLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLK------GKEP 192

Query: 249 PGEAGAEKSS-SAVAPQRS----RKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRML 303
                 +K   SAV P  +    ++ R  YT+ Q+ ELE+EF FN Y+ + +R++++  L
Sbjct: 193 VVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTL 252

Query: 304 NLTDRQVKIWFQNRRMKEKK 323
            L++RQVKIWFQNRRMK KK
Sbjct: 253 CLSERQVKIWFQNRRMKWKK 272


>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
          Length = 363

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 82/240 (34%), Positives = 113/240 (47%), Gaps = 28/240 (11%)

Query: 103 YAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAAS 162
           Y P   AAAAAAAAA AA          P  G   D L  A E V   P PP  P   + 
Sbjct: 116 YGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPP--PPHFSE 173

Query: 163 NFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAPPQPEGAA----DKGDPRTGAG 218
            F S +   G +    ++  EA+ G P    Q        + EG+     D G   + AG
Sbjct: 174 TFPS-LPAEGKVYSSDEEKLEASAGDPAGSEQ--------EEEGSGGDSEDDGFLDSSAG 224

Query: 219 GGGGSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQ-RSRKKRCPYTKYQ 277
           G G      A  G +PK   +GS G G     E GA  ++   AP  +SR++R  +T  Q
Sbjct: 225 GPG------ALLGPKPK--LKGSLGTG----AEEGAPVTAGVTAPGGKSRRRRTAFTSEQ 272

Query: 278 IRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPL 337
           + ELE+EF    Y++  +R Q++  L L++ QVKIWFQNRR K K++    +   +G P+
Sbjct: 273 LLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPV 332


>gi|27804315 homeobox C12 [Homo sapiens]
          Length = 282

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 65/156 (41%), Positives = 79/156 (50%), Gaps = 16/156 (10%)

Query: 184 AAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSP-----CTKATPGSEPKGAA 238
           A PG      +P  PPA       A  G    G GGG G P     C      S      
Sbjct: 118 AGPGAALLPLEPSGPPALGFKYDYAAGGGGGDG-GGGAGPPHDPPSCQSLESDSSSSLLN 176

Query: 239 EGSGGDGEGPPGE--------AGAEKSSSAVAP--QRSRKKRCPYTKYQIRELEREFFFN 288
           EG+ G G G PG          G   S +   P   RSRKKR PY+K Q+ ELE EF  N
Sbjct: 177 EGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVN 236

Query: 289 VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 324
            +I +++R +LS  LNL+D+QVKIWFQNRRMK+K+L
Sbjct: 237 EFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272


>gi|116734702 homeobox D13 [Homo sapiens]
          Length = 343

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 102/337 (30%), Positives = 127/337 (37%), Gaps = 108/337 (32%)

Query: 77  GGGGGGSAGGGSSGGGPGGGGGGAGGY--APYYA------AAAAAAAAAAAAEEAA---- 124
           GG GG  A   SS        G   G+  AP +A      AAAAAAAAAAAA  A+    
Sbjct: 17  GGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAAASGFAY 76

Query: 125 -------------------MQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGA----- 160
                                R   PPA   P     AP P  AA  PP  PA       
Sbjct: 77  PGTSERTGSSSSSSSSAVVAARPEAPPAKECP-----APTPAAAAAAPPSAPALGYGYHF 131

Query: 161 ASNFYSAVGRNGILPQGFDQFYEAAPGPPFA--------------GPQPPPPPAPPQPEG 206
            + +YS    +G+   G  Q   A    P A              G      PA   P  
Sbjct: 132 GNGYYSCRMSHGV---GLQQ--NALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVPAR 186

Query: 207 AAD-------------------------KGDPRTGA--------------GGGGGSPCTK 227
           A +                          G+PR  A              G      CTK
Sbjct: 187 AKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNSQVYCTK 246

Query: 228 ATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFF 287
             P        +GS       PG+    +    V  +R RKKR PYTK Q++ELE E+  
Sbjct: 247 DQP--------QGSHFWKSSFPGDVALNQPDMCVY-RRGRKKRVPYTKLQLKELENEYAI 297

Query: 288 NVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 324
           N +INK+KR ++S   NL++RQV IWFQNRR+K+KK+
Sbjct: 298 NKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKI 334


>gi|24497554 homeobox A13 [Homo sapiens]
          Length = 388

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 97/286 (33%), Positives = 113/286 (39%), Gaps = 58/286 (20%)

Query: 92  GPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLP-PAGRRPDVLFKAPEPVCAA 150
           G       A G AP  AAAAAAAAAAAAA  AA      P PAG       K   P  AA
Sbjct: 100 GAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAA 159

Query: 151 PGPPHGPA----GAASNFYSAVGRNGILPQG---------------FDQFYEAAPGPPF- 190
                GPA    G   + Y    R G  P                 F   Y    GP   
Sbjct: 160 AQSSSGPAALPYGYFGSGYYPCARMGPHPNAIKSCAQPASAAAAAAFADKYMDTAGPAAE 219

Query: 191 -----------------AGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGS---PCTKATP 230
                            AGP     P P    G  D      G GG G S   P      
Sbjct: 220 EFSSRAKEFAFYHQGYAAGPYHHHQPMP----GYLDM-PVVPGLGGPGESRHEPLGLPME 274

Query: 231 GSEPKGAAEGSGGDGEGPPGEAG------------AEKSSSAVAPQRSRKKRCPYTKYQI 278
             +P     G  G    P  +A                 S A + +R RKKR PYTK Q+
Sbjct: 275 SYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQL 334

Query: 279 RELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 324
           +ELERE+  N +I K+KR ++S   NL++RQV IWFQNRR+KEKK+
Sbjct: 335 KELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 380



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 51/167 (30%), Positives = 59/167 (35%), Gaps = 30/167 (17%)

Query: 77  GGGGGGSAGGGSSGGGPGGGG------GGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELL 130
           G     +A   ++  G GGGG        AGG     AAAAAAAAAAA      M     
Sbjct: 37  GAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAH--- 93

Query: 131 PPAGRRPDVLFKAPEPVCAAPG--PPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGP 188
            PA   P     A     +APG  PP   A AA+   +A         G        PGP
Sbjct: 94  -PAPLAPG----AASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSG-------GPGP 141

Query: 189 PFAGPQPPPPPAPPQPEGAADKGDPRT-----GAGGGGGSPCTKATP 230
             AGP          P  AA +          G  G G  PC +  P
Sbjct: 142 --AGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYPCARMGP 186



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 49/163 (30%), Positives = 57/163 (34%), Gaps = 12/163 (7%)

Query: 95  GGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLP-PAGRRPDVLFKAPEPVCAAPGP 153
           GGG  A         AAAAAAAAAAA  A       P PA       F       AA   
Sbjct: 23  GGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAA--- 79

Query: 154 PHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPG--PPFAGPQPPPPPAPPQPEGAADKG 211
               A AA+   + +     L  G    Y +APG  PP A        A      AA   
Sbjct: 80  ---AAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSS 136

Query: 212 DPRTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGA 254
                AG  G     + +P S    AA+ S G    P G  G+
Sbjct: 137 GGPGPAGPAGAEAAKQCSPCS---AAAQSSSGPAALPYGYFGS 176


>gi|4504465 homeobox B2 [Homo sapiens]
          Length = 356

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 56/149 (37%), Positives = 74/149 (49%), Gaps = 19/149 (12%)

Query: 184 AAPGPPFAGPQPPP----PPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAE 239
           A  GP    P PPP    PPAP  P     K   +        SP   A P S       
Sbjct: 72  AEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPAS-----GV 126

Query: 240 GSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQL 299
           GS  DG G P   G            +R+ R  YT  Q+ ELE+EF FN Y+ + +R+++
Sbjct: 127 GSPADGLGLPEAGGGG----------ARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEI 176

Query: 300 SRMLNLTDRQVKIWFQNRRMKEKKLNRDR 328
           + +L+LT+RQVK+WFQNRRMK K+  + R
Sbjct: 177 AALLDLTERQVKVWFQNRRMKHKRQTQHR 205


>gi|24497536 homeobox C13 [Homo sapiens]
          Length = 330

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 92/305 (30%), Positives = 120/305 (39%), Gaps = 74/305 (24%)

Query: 81  GGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLP-PAGRRPDV 139
           G   GGG  GGG GG GGG  G +P  A +     ++  A      R+LLP P   RP  
Sbjct: 27  GIGGGGGGGGGGTGGAGGGCSGASPGKAPSMDGLGSSCPASHC---RDLLPHPVLGRPPA 83

Query: 140 LFKAPEPV-------------CAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAP 186
              AP+               CA P  P   + A   +    G +         +Y    
Sbjct: 84  PLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFGGS---------YYGCRL 134

Query: 187 GPPFAGPQPP----PPPAPPQPEGAADKGDPRTGAGGGGGSPCT----KATPGSEPKGAA 238
                  Q P    P    P+P GA    D  + A      P      +A PG       
Sbjct: 135 SHNVNLQQKPCAYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVV 194

Query: 239 EGSGGDGEGPPGEA----------------------GAEKSSSA---------VAP---- 263
            G  G  E P  +A                        E+S SA         V P    
Sbjct: 195 PGISGHPE-PRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPE 253

Query: 264 ----QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRM 319
               +R RKKR PYTK Q++ELE+E+  + +I KEKR ++S   NL++RQV IWFQNRR+
Sbjct: 254 VSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRV 313

Query: 320 KEKKL 324
           KEKK+
Sbjct: 314 KEKKV 318



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 43/131 (32%), Positives = 49/131 (37%), Gaps = 40/131 (30%)

Query: 77  GGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRR 136
           G GGGG  GGG +GG  GG  G + G AP      ++  A+         R+LL      
Sbjct: 27  GIGGGGGGGGGGTGGAGGGCSGASPGKAPSMDGLGSSCPASHC-------RDLL------ 73

Query: 137 PDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPP 196
                  P PV    G P  P GA              PQG    Y   P P  A  Q  
Sbjct: 74  -------PHPVL---GRPPAPLGA--------------PQG--AVYTDIPAPE-AARQCA 106

Query: 197 PPPAPPQPEGA 207
           PPPAPP    A
Sbjct: 107 PPPAPPTSSSA 117



 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 205 EGAADKGDPRTGAGGGGGS-----PCTKATPGSEPKGAAEGS 241
           + AA+ G    G GGGGG+      C+ A+PG  P     GS
Sbjct: 21  DSAAESGIGGGGGGGGGGTGGAGGGCSGASPGKAPSMDGLGS 62


>gi|19923391 homeobox D3 [Homo sapiens]
          Length = 432

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 53/148 (35%), Positives = 74/148 (50%), Gaps = 30/148 (20%)

Query: 193 PQPPPPP------APPQPEGAADKGDPRTGAGGGGGSPCT---------KATPGSEPKG- 236
           PQPPPPP      +P  P G      P+ G      S            ++   S+ K  
Sbjct: 117 PQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNS 176

Query: 237 -AAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEK 295
            A  G   + + PPG A             S++ R  YT  Q+ ELE+EF FN Y+ + +
Sbjct: 177 CATAGESCEDKSPPGPA-------------SKRVRTAYTSAQLVELEKEFHFNRYLCRPR 223

Query: 296 RLQLSRMLNLTDRQVKIWFQNRRMKEKK 323
           R++++ +LNLT+RQ+KIWFQNRRMK KK
Sbjct: 224 RVEMANLLNLTERQIKIWFQNRRMKYKK 251


>gi|24497513 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 33/160 (20%)

Query: 185 APGPPFAGPQPPPP----PAPPQ----PEGAADKGDPRTGAGGGG-GSPCT--------- 226
           AP PP   PQPP P    P PP     P+ A++   P   A      SP           
Sbjct: 101 APQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMK 160

Query: 227 KATPGSEPKGAAEGSGGDGEG---PPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELER 283
           ++   ++ K ++  SG    G   PPG+A             S++ R  YT  Q+ ELE+
Sbjct: 161 ESRQNTKQKTSSSSSGESCAGDKSPPGQAS------------SKRARTAYTSAQLVELEK 208

Query: 284 EFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 323
           EF FN Y+ + +R++++ +LNLT+RQ+KIWFQNRRMK KK
Sbjct: 209 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248


>gi|13562112 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 33/160 (20%)

Query: 185 APGPPFAGPQPPPP----PAPPQ----PEGAADKGDPRTGAGGGG-GSPCT--------- 226
           AP PP   PQPP P    P PP     P+ A++   P   A      SP           
Sbjct: 101 APQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMK 160

Query: 227 KATPGSEPKGAAEGSGGDGEG---PPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELER 283
           ++   ++ K ++  SG    G   PPG+A             S++ R  YT  Q+ ELE+
Sbjct: 161 ESRQNTKQKTSSSSSGESCAGDKSPPGQAS------------SKRARTAYTSAQLVELEK 208

Query: 284 EFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 323
           EF FN Y+ + +R++++ +LNLT+RQ+KIWFQNRRMK KK
Sbjct: 209 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248


>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
          Length = 283

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 77/236 (32%), Positives = 100/236 (42%), Gaps = 49/236 (20%)

Query: 102 GYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAA 161
           G   YYAA        A     A +    PPA      L+   +P    P PPH   GA 
Sbjct: 3   GEEQYYAATQLYKDPCAFQRGPAPEFSASPPA-----CLYMGRQP---PPPPPHPFPGAL 54

Query: 162 SNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQP--------------PPPPAPPQPEGA 207
                     G L QG          PP A                  P PPA P PEGA
Sbjct: 55  ----------GALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGA 104

Query: 208 ADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSR 267
            + G            P  K+T     KG  + +GG              + A  P+ ++
Sbjct: 105 -EPGVLEEPNRVQLPFPWMKSTKAHAWKG--QWAGG--------------AYAAEPEENK 147

Query: 268 KKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 323
           + R  YT+ Q+ ELE+EF FN YI++ +R++L+ MLNLT+R +KIWFQNRRMK KK
Sbjct: 148 RTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 203



 Score = 29.6 bits (65), Expect = 4.0
 Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 90  GGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPA-------GRRPDVLFK 142
           GGG   GGGG     P    A  +     A          +PPA       GR P  L  
Sbjct: 210 GGGTAVGGGGVA--EPEQDCAVTSGEELLALPPPPPPGGAVPPAAPVAAREGRLPPGLSA 267

Query: 143 APEPVCAAPGPPHGP 157
           +P+P   AP  P  P
Sbjct: 268 SPQPSSVAPRRPQEP 282



 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 138 DVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPP 197
           D    + E + A P PP  P GA         R G LP G      A+P P    P+ P 
Sbjct: 226 DCAVTSGEELLALPPPPP-PGGAVPPAAPVAAREGRLPPGL----SASPQPSSVAPRRPQ 280

Query: 198 PP 199
            P
Sbjct: 281 EP 282


>gi|13273315 homeobox B4 [Homo sapiens]
          Length = 251

 Score = 85.9 bits (211), Expect = 5e-17
 Identities = 54/152 (35%), Positives = 75/152 (49%), Gaps = 17/152 (11%)

Query: 186 PGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGG---GGGSPCTKATPGSEPKGAAEG-- 240
           PGPP   P PPPPP PP P G + +      AG      G  C   +    P   A+   
Sbjct: 71  PGPP---PPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPL 127

Query: 241 ----SGGDGEGPPGEAGAEK-SSSAVAPQ----RSRKKRCPYTKYQIRELEREFFFNVYI 291
               S    + P       K   S V P       ++ R  YT+ Q+ ELE+EF +N Y+
Sbjct: 128 HPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYL 187

Query: 292 NKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 323
            + +R++++  L L++RQ+KIWFQNRRMK KK
Sbjct: 188 TRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 219


>gi|24497517 homeobox A5 [Homo sapiens]
          Length = 270

 Score = 85.1 bits (209), Expect = 8e-17
 Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 31/201 (15%)

Query: 152 GPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAP---PQPEGAA 208
           G  H  +G  +  Y+A          + Q     P      PQP P P     P P   +
Sbjct: 60  GSGHFGSGERARSYAASASAAPAEPRYSQ-----PATSTHSPQPDPLPCSAVAPSPGSDS 114

Query: 209 DKGDPRTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPPG--EAGAEKSSSAVAPQR- 265
             G   + +   G S    +T  S  +G    SG + + P    +A A+   S   P + 
Sbjct: 115 HHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQP 174

Query: 266 --------------------SRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNL 305
                                ++ R  YT+YQ  ELE+EF FN Y+ + +R++++  L L
Sbjct: 175 QIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 234

Query: 306 TDRQVKIWFQNRRMKEKKLNR 326
           ++RQ+KIWFQNRRMK KK N+
Sbjct: 235 SERQIKIWFQNRRMKWKKDNK 255


>gi|121114296 caudal type homeobox 1 [Homo sapiens]
          Length = 265

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 68/202 (33%), Positives = 89/202 (44%), Gaps = 50/202 (24%)

Query: 172 GILPQGFDQFYEAAPGPPFAGPQPP---------PPPAPPQPEGA---ADKGDPRTGAGG 219
           G+ PQ +       P PP A PQ P         P PAPP   GA   A K D     G 
Sbjct: 24  GLGPQAY-----GPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGP 78

Query: 220 GGGSPCTK----------------ATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAP 263
           G  +P                   A PG  P   A+  GG G   P   GA++ +     
Sbjct: 79  GPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGT--PSSPGAQRPTPYEWM 136

Query: 264 QRS---------------RKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDR 308
           +RS                K R  YT +Q  ELE+EF ++ YI   ++ +L+  L LT+R
Sbjct: 137 RRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTER 196

Query: 309 QVKIWFQNRRMKEKKLNRDRLQ 330
           QVKIWFQNRR KE+K+N+ + Q
Sbjct: 197 QVKIWFQNRRAKERKVNKKKQQ 218


>gi|23503237 homeobox B6 [Homo sapiens]
          Length = 224

 Score = 83.2 bits (204), Expect = 3e-16
 Identities = 59/177 (33%), Positives = 78/177 (44%), Gaps = 36/177 (20%)

Query: 182 YEAAPGPPFAGPQPPPPPAPPQPEGAADKGD-PRTGAGGGGGSPCTKATPGS---EPKGA 237
           Y +    P      P  P P Q +G A     P  G G G  +PC      +   E + A
Sbjct: 28  YSSGYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESA 87

Query: 238 AEGSGGDGEGPP-----------------GEAGAEKSSSAVAPQRSRKKRC--------- 271
              SG D E PP                 GE   +K S+ V P   R   C         
Sbjct: 88  CALSGAD-EQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSG 146

Query: 272 -----PYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 323
                 YT+YQ  ELE+EF +N Y+ + +R++++  L LT+RQ+KIWFQNRRMK KK
Sbjct: 147 RRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 203


>gi|23397672 homeobox D4 [Homo sapiens]
          Length = 255

 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 59/170 (34%), Positives = 79/170 (46%), Gaps = 19/170 (11%)

Query: 154 PHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDP 213
           P G +G           +G  P G    Y AAPG P   P P PPPAP     A  + DP
Sbjct: 61  PFGGSGPGPGSALPARGHGQEPGGPGGHY-AAPGEPCPAP-PAPPPAPLPGARAYSQSDP 118

Query: 214 RTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPY 273
           +    G          P  +       +       P   G E       P+RSR     Y
Sbjct: 119 KQPPSGTALKQPAVVYPWMKKVHVNSVN-------PNYTGGE-------PKRSRTA---Y 161

Query: 274 TKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 323
           T+ Q+ ELE+EF FN Y+ + +R++++  L L++RQ+KIWFQNRRMK KK
Sbjct: 162 TRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 211


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,778,604
Number of Sequences: 37866
Number of extensions: 1498535
Number of successful extensions: 50910
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 1443
Number of HSP's that attempted gapping in prelim test: 14636
Number of HSP's gapped (non-prelim): 18010
length of query: 338
length of database: 18,247,518
effective HSP length: 103
effective length of query: 235
effective length of database: 14,347,320
effective search space: 3371620200
effective search space used: 3371620200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.