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Search of human proteins with 116008440
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116008440 hypothetical protein LOC222166 [Homo sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116008440 hypothetical protein LOC222166 [Homo sapiens] 279 5e-76
gi|169204926 PREDICTED: similar to hCG2041217 [Homo sapiens] 30 0.41
gi|169205586 PREDICTED: similar to hCG2041217 [Homo sapiens] 30 0.41
gi|169203873 PREDICTED: similar to REST corepressor 2 [Homo sapi... 30 0.41
gi|115529475 polymerase (RNA) III (DNA directed) polypeptide G (... 30 0.70
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 28 2.7
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 28 2.7
gi|71037379 liver glycogen phosphorylase [Homo sapiens] 28 2.7
gi|4506411 Ran GTPase activating protein 1 [Homo sapiens] 28 2.7
gi|6912398 general transcription factor IIIC, polypeptide 3, 102... 28 2.7
gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens] 27 3.5
gi|90991702 leucine-rich repeat kinase 1 [Homo sapiens] 27 3.5
gi|24797065 zinc finger protein 212 [Homo sapiens] 27 4.6
gi|6631095 minichromosome maintenance complex component 3 [Homo ... 27 6.0
gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens] 27 6.0
gi|20143946 potassium channel, subfamily K, member 10 isoform 3 ... 27 6.0
gi|20143944 potassium channel, subfamily K, member 10 isoform 2 ... 27 6.0
gi|10863961 potassium channel, subfamily K, member 10 isoform 1 ... 27 6.0
gi|93204861 protein phosphatase 1, regulatory (inhibitor) subuni... 27 6.0
gi|226693357 phospholipase A2, group IVC isoform 2 precursor [Ho... 26 7.8
gi|226693354 phospholipase A2, group IVC isoform 1 precursor [Ho... 26 7.8
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo... 26 7.8
>gi|116008440 hypothetical protein LOC222166 [Homo sapiens]
Length = 131
Score = 279 bits (713), Expect = 5e-76
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 60
MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES
Sbjct: 1 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 60
Query: 61 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPE 120
EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPE
Sbjct: 61 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPE 120
Query: 121 ADHPQMGVSQQ 131
ADHPQMGVSQQ
Sbjct: 121 ADHPQMGVSQQ 131
>gi|169204926 PREDICTED: similar to hCG2041217 [Homo sapiens]
Length = 266
Score = 30.4 bits (67), Expect = 0.41
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 80 KTLHEVLEKVFKSFRPLLGLPDADD-DAFEEYSADVEEEEPEADHPQ 125
K H + R L G D +D D FEE + E EP+A HP+
Sbjct: 106 KKTHSRTSMTDRQARRLRGCKDKEDSDEFEESRGGLSEGEPDAGHPK 152
>gi|169205586 PREDICTED: similar to hCG2041217 [Homo sapiens]
Length = 266
Score = 30.4 bits (67), Expect = 0.41
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 80 KTLHEVLEKVFKSFRPLLGLPDADD-DAFEEYSADVEEEEPEADHPQ 125
K H + R L G D +D D FEE + E EP+A HP+
Sbjct: 106 KKTHSRTSMTDRQARRLRGCKDKEDSDEFEESRGGLSEGEPDAGHPK 152
>gi|169203873 PREDICTED: similar to REST corepressor 2 [Homo
sapiens]
Length = 266
Score = 30.4 bits (67), Expect = 0.41
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 80 KTLHEVLEKVFKSFRPLLGLPDADD-DAFEEYSADVEEEEPEADHPQ 125
K H + R L G D +D D FEE + E EP+A HP+
Sbjct: 106 KKTHSRTSMTDRQARRLRGCKDKEDSDEFEESRGGLSEGEPDAGHPK 152
>gi|115529475 polymerase (RNA) III (DNA directed) polypeptide G
(32kD) [Homo sapiens]
Length = 223
Score = 29.6 bits (65), Expect = 0.70
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 78 GKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEADH 123
G+K+ E EK + G D DDDA E+ D EE+E E D+
Sbjct: 154 GEKSDEENEEKEGSKEKSKEGDDDDDDDAAEQEEYDEEEQEEENDY 199
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 27.7 bits (60), Expect = 2.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 85 VLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEAD 122
VL+ VFKS R + + +D E + +EEE E++
Sbjct: 1494 VLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESE 1531
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 27.7 bits (60), Expect = 2.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 85 VLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEAD 122
VL+ VFKS R + + +D E + +EEE E++
Sbjct: 1476 VLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESE 1513
>gi|71037379 liver glycogen phosphorylase [Homo sapiens]
Length = 847
Score = 27.7 bits (60), Expect = 2.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 66 FLQLAQDYISSCGKKTLHEVLE----KVFKSFRPLLGLPDADDDAFEEYSADVEE-EEPE 120
+++ Q Y C K+ + LE + ++ LGL +A D+A + D+EE EE E
Sbjct: 68 WIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIE 127
Query: 121 AD 122
D
Sbjct: 128 ED 129
>gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]
Length = 587
Score = 27.7 bits (60), Expect = 2.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 84 EVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEADHPQ 125
E L++V + F L DD EE + EEEE EA+ +
Sbjct: 339 EQLQEVLEGFNMAKVLASLSDDEDEEEEEEGEEEEEEAEEEE 380
Score = 27.3 bits (59), Expect = 3.5
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 67 LQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEADHPQ 125
L L + + G + L EVLE F + L L D D+D EE + EEEE E + +
Sbjct: 326 LDLNGNTLGEEGCEQLQEVLEG-FNMAKVLASLSD-DEDEEEEEEGEEEEEEAEEEEEE 382
>gi|6912398 general transcription factor IIIC, polypeptide 3, 102kDa
[Homo sapiens]
Length = 886
Score = 27.7 bits (60), Expect = 2.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 80 KTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEADHPQMG 127
+T V + V K F +LG + DD+ EE + EEEE + P G
Sbjct: 73 ETSDGVRKSVHKVFASMLG-ENEDDEEEEEEEEEEEEEEETPEQPTAG 119
>gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens]
Length = 2539
Score = 27.3 bits (59), Expect = 3.5
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 63 CLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEAD 122
C P L++D ++S TL + L++V +S R L LP+ ++ PEA+
Sbjct: 1068 CWP--SLSEDCVAS--HTTLSQQLDQVLQSLREALELPEPRTPPLSSLVEQAAQKAPEAE 1123
Query: 123 -HP 124
HP
Sbjct: 1124 AHP 1126
>gi|90991702 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 2015
Score = 27.3 bits (59), Expect = 3.5
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 10 AEKWCSNTPFELI---ATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVW 57
+E W SN P L+ A+ E RR++ Y P + V+C G G+ VW
Sbjct: 1703 SEVWYSNGPGLLVIDCASLEICRRLEPYMAPSMVTSVVCSSEGRGEEV-VW 1752
>gi|24797065 zinc finger protein 212 [Homo sapiens]
Length = 495
Score = 26.9 bits (58), Expect = 4.6
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 58 SESEDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPL--LGLPDADDDAFEEYSADVE 115
S D + F + + + K+ V+E +++ L LG + + + E D+E
Sbjct: 142 SLENDGVCFTEQEWENLEDWQKELYRNVMESNYETLVSLKVLGQTEGEAELGTEMLGDLE 201
Query: 116 EEEPEADHPQMGV 128
EE P HP GV
Sbjct: 202 EEGPGGAHPAGGV 214
>gi|6631095 minichromosome maintenance complex component 3 [Homo
sapiens]
Length = 808
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 100 PDADD-DAFEEYS-ADVEEEEPEADHPQMGVSQQ 131
PDA D D+++ Y +D EEE P+ P+ SQ+
Sbjct: 697 PDAKDGDSYDPYDFSDTEEEMPQVHTPKTADSQE 730
>gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens]
Length = 350
Score = 26.6 bits (57), Expect = 6.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 20 ELIATEETERRMDFYADPGVSF 41
E+I +EE ERR FY + G+++
Sbjct: 223 EVITSEEAERRGQFYDNKGITY 244
>gi|20143946 potassium channel, subfamily K, member 10 isoform 3
[Homo sapiens]
Length = 543
Score = 26.6 bits (57), Expect = 6.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 14/44 (31%)
Query: 79 KKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEAD 122
KKTL E ++K++K+FR YS D E++E E +
Sbjct: 467 KKTLPEDVQKIYKTFR--------------NYSLDEEKKEEETE 496
>gi|20143944 potassium channel, subfamily K, member 10 isoform 2
[Homo sapiens]
Length = 543
Score = 26.6 bits (57), Expect = 6.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 14/44 (31%)
Query: 79 KKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEAD 122
KKTL E ++K++K+FR YS D E++E E +
Sbjct: 467 KKTLPEDVQKIYKTFR--------------NYSLDEEKKEEETE 496
>gi|10863961 potassium channel, subfamily K, member 10 isoform 1
[Homo sapiens]
Length = 538
Score = 26.6 bits (57), Expect = 6.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 14/44 (31%)
Query: 79 KKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEAD 122
KKTL E ++K++K+FR YS D E++E E +
Sbjct: 462 KKTLPEDVQKIYKTFR--------------NYSLDEEKKEEETE 491
>gi|93204861 protein phosphatase 1, regulatory (inhibitor) subunit
9A [Homo sapiens]
Length = 1098
Score = 26.6 bits (57), Expect = 6.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 101 DADDDAFEEYSADVEEEE 118
DADDD EY+ D EE+E
Sbjct: 625 DADDDETGEYATDEEEDE 642
>gi|226693357 phospholipase A2, group IVC isoform 2 precursor [Homo
sapiens]
Length = 551
Score = 26.2 bits (56), Expect = 7.8
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 23/99 (23%)
Query: 28 ERRMDFYADPGVSFYVLCPDNG-------------CGDNFHVWSESEDCLPFLQLAQDY- 73
E +D ++ S Y+L + G CG + WS++ D +LA Y
Sbjct: 450 EAELDLWSKAPASCYILKGETGPVVMHFPLFNIDACGGDIEAWSDTYDT---FKLADTYT 506
Query: 74 ------ISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDA 106
+ + KK + E +K+ + + GL D A
Sbjct: 507 LDVVVLLLALAKKNVRENKKKILRELMNVAGLYYPKDSA 545
>gi|226693354 phospholipase A2, group IVC isoform 1 precursor [Homo
sapiens]
Length = 541
Score = 26.2 bits (56), Expect = 7.8
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 23/99 (23%)
Query: 28 ERRMDFYADPGVSFYVLCPDNG-------------CGDNFHVWSESEDCLPFLQLAQDY- 73
E +D ++ S Y+L + G CG + WS++ D +LA Y
Sbjct: 440 EAELDLWSKAPASCYILKGETGPVVMHFPLFNIDACGGDIEAWSDTYDT---FKLADTYT 496
Query: 74 ------ISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDA 106
+ + KK + E +K+ + + GL D A
Sbjct: 497 LDVVVLLLALAKKNVRENKKKILRELMNVAGLYYPKDSA 535
>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
sapiens]
Length = 1483
Score = 26.2 bits (56), Expect = 7.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 101 DADDDAFEEYSADVEEEEPEADHPQMGV 128
D++DD +E + EEEE E D+ G+
Sbjct: 1253 DSEDDESDEEEEEEEEEEEEEDYEVAGL 1280
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,694,438
Number of Sequences: 37866
Number of extensions: 241687
Number of successful extensions: 881
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 27
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.