Search of human proteins with 11560141

Search of human proteins with 11560141

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11560141 T-cell leukemia translocation altered [Homo
sapiens]
         (103 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11560141 T-cell leukemia translocation altered [Homo sapiens]      216   3e-57
gi|5032005 protein tyrosine phosphatase, receptor type, C-associ...    33   0.063
gi|23097310 elongation of very long chain fatty acids like 3 [Ho...    27   2.6  
gi|149274653 patched domain containing 2 [Homo sapiens]                27   4.5  
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H...    26   5.9  
gi|237512982 voltage-gated sodium channel type V alpha isoform f...    26   7.7  
gi|237512980 voltage-gated sodium channel type V alpha isoform e...    26   7.7  
gi|37622907 voltage-gated sodium channel type V alpha isoform a ...    26   7.7  
gi|30089970 voltage-gated sodium channel type V alpha isoform b ...    26   7.7  
gi|150417969 voltage-gated sodium channel type V alpha isoform d...    26   7.7  
gi|150417967 voltage-gated sodium channel type V alpha isoform c...    26   7.7  
gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo ...    26   7.7  
gi|239748090 PREDICTED: similar to sodium channel, voltage-gated...    26   7.7  
gi|19526767 MLK-related kinase isoform 2 [Homo sapiens]                26   7.7  
gi|82880648 MLK-related kinase isoform 1 [Homo sapiens]                26   7.7  
gi|45331217 zinc finger protein 526 [Homo sapiens]                     26   7.7  
gi|52353302 transmembrane protein 198 [Homo sapiens]                   26   7.7  
gi|62526120 glycolipid transfer protein domain containing 2 [Hom...    26   7.7  

>gi|11560141 T-cell leukemia translocation altered [Homo sapiens]
          Length = 103

 Score =  216 bits (550), Expect = 3e-57
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MAESWSGQALQALPATVLGALGSEFLREWEAQDMRVTLFKLLLLWLVLSLLGIQLAWGFY 60
           MAESWSGQALQALPATVLGALGSEFLREWEAQDMRVTLFKLLLLWLVLSLLGIQLAWGFY
Sbjct: 1   MAESWSGQALQALPATVLGALGSEFLREWEAQDMRVTLFKLLLLWLVLSLLGIQLAWGFY 60

Query: 61  GNTVTGLYHRPGLGGQNGSTPDGSTHFPSWEMAANEPLKTHRE 103
           GNTVTGLYHRPGLGGQNGSTPDGSTHFPSWEMAANEPLKTHRE
Sbjct: 61  GNTVTGLYHRPGLGGQNGSTPDGSTHFPSWEMAANEPLKTHRE 103


>gi|5032005 protein tyrosine phosphatase, receptor type,
          C-associated protein [Homo sapiens]
          Length = 206

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 10 LQALPATVLGALGSEFLREWEAQDMRVTLFKLLLLWLVLSLLGIQLAWGFYGNTVTGLYH 69
          L ALP    GALGS    E       VT+  LLLL L+L+  G+ LAW        G YH
Sbjct: 12 LLALP----GALGSGGSAEDSVGSSSVTVVLLLLLLLLLAT-GLALAWRRLSRDSGGYYH 66

Query: 70 RPGLG 74
             LG
Sbjct: 67 PARLG 71


>gi|23097310 elongation of very long chain fatty acids like 3
          [Homo sapiens]
          Length = 270

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 3  ESWSGQALQALPATVLGALGSEFLREWEAQDMRVTLFKLLLLWLVLSLLGIQLAWGFYGN 62
          E W+     AL   VL A+G  +++E +  +++  L        + S+LG    WG  G 
Sbjct: 32 EYWATSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSFCLAIFSILGAVRMWGIMGT 91

Query: 63 TV 64
           +
Sbjct: 92 VL 93


>gi|149274653 patched domain containing 2 [Homo sapiens]
          Length = 1392

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 3    ESWSGQALQALPATVLGALGSEFLREWEAQDMRVTLFKLLLLWLVLSLL 51
            ES+  Q LQALP   +   G +    W+   M +   +  L  LVLSLL
Sbjct: 1144 ESFLQQQLQALPEGSVLRRGFQTCEHWKQIFMEIVGVQSALCGLVLSLL 1192


>gi|24586686 voltage-dependent calcium channel gamma-8 subunit
          [Homo sapiens]
          Length = 425

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/34 (38%), Positives = 14/34 (41%)

Query: 66 GLYHRPGLGGQNGSTPDGSTHFPSWEMAANEPLK 99
          G  HR G G      P G TH   W +   E LK
Sbjct: 64 GTPHRGGGGASEKKDPGGLTHSGLWRICCLEGLK 97


>gi|237512982 voltage-gated sodium channel type V alpha isoform f
            [Homo sapiens]
          Length = 1962

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 38   LFKLLLLWLVLSLLGIQLAWGFYGNTV 64
            L   L+ WL+ S++G+ L  G +G  +
Sbjct: 1284 LLVCLIFWLIFSIMGVNLFAGKFGRCI 1310


>gi|237512980 voltage-gated sodium channel type V alpha isoform e
            [Homo sapiens]
          Length = 1983

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 38   LFKLLLLWLVLSLLGIQLAWGFYGNTV 64
            L   L+ WL+ S++G+ L  G +G  +
Sbjct: 1337 LLVCLIFWLIFSIMGVNLFAGKFGRCI 1363


>gi|37622907 voltage-gated sodium channel type V alpha isoform a [Homo
            sapiens]
          Length = 2016

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 38   LFKLLLLWLVLSLLGIQLAWGFYGNTV 64
            L   L+ WL+ S++G+ L  G +G  +
Sbjct: 1338 LLVCLIFWLIFSIMGVNLFAGKFGRCI 1364


>gi|30089970 voltage-gated sodium channel type V alpha isoform b [Homo
            sapiens]
          Length = 2015

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 38   LFKLLLLWLVLSLLGIQLAWGFYGNTV 64
            L   L+ WL+ S++G+ L  G +G  +
Sbjct: 1337 LLVCLIFWLIFSIMGVNLFAGKFGRCI 1363


>gi|150417969 voltage-gated sodium channel type V alpha isoform d
            [Homo sapiens]
          Length = 1998

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 38   LFKLLLLWLVLSLLGIQLAWGFYGNTV 64
            L   L+ WL+ S++G+ L  G +G  +
Sbjct: 1338 LLVCLIFWLIFSIMGVNLFAGKFGRCI 1364


>gi|150417967 voltage-gated sodium channel type V alpha isoform c
            [Homo sapiens]
          Length = 2016

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 38   LFKLLLLWLVLSLLGIQLAWGFYGNTV 64
            L   L+ WL+ S++G+ L  G +G  +
Sbjct: 1338 LLVCLIFWLIFSIMGVNLFAGKFGRCI 1364


>gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo
            sapiens]
          Length = 1998

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 38   LFKLLLLWLVLSLLGIQLAWG-FYG--NTVTG 66
            L   L+ WL+ S++G+ L  G FY   NT TG
Sbjct: 1340 LLVCLIFWLIFSIMGVNLFAGKFYHCINTTTG 1371


>gi|239748090 PREDICTED: similar to sodium channel, voltage-gated,
           type V, alpha (long QT syndrome 3) [Homo sapiens]
          Length = 1637

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 38  LFKLLLLWLVLSLLGIQLAWGFYGNTV 64
           L   L+ WL+ S++G+ L  G +G  +
Sbjct: 947 LLVCLIFWLIFSIMGVNLFAGKFGRCI 973


>gi|19526767 MLK-related kinase isoform 2 [Homo sapiens]
          Length = 455

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 19 GALGSEFLREWEAQDMRVTLFKLLLLWL---VLSLLGIQLAWGFYG 61
          G+ GS +  +W +QD  V + KLL +     +LS+L  +    FYG
Sbjct: 25 GSFGSVYRAKWISQDKEVAVKKLLKIEKEAEILSVLSHRNIIQFYG 70


>gi|82880648 MLK-related kinase isoform 1 [Homo sapiens]
          Length = 800

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 19 GALGSEFLREWEAQDMRVTLFKLLLLWL---VLSLLGIQLAWGFYG 61
          G+ GS +  +W +QD  V + KLL +     +LS+L  +    FYG
Sbjct: 25 GSFGSVYRAKWISQDKEVAVKKLLKIEKEAEILSVLSHRNIIQFYG 70


>gi|45331217 zinc finger protein 526 [Homo sapiens]
          Length = 670

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 60  YGNTVTGLYHRPGLGGQNGSTPDGSTHFPS 89
           + N    LYHR    G++G+ P G+T  P+
Sbjct: 396 FSNMTKFLYHRRTHAGKSGAPPTGATAPPA 425


>gi|52353302 transmembrane protein 198 [Homo sapiens]
          Length = 360

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 1   MAESWSGQALQALPAT------VLGALGSEFLREWEAQDMRVTLFKLLLLWLVLSLLGIQ 54
           +A + +G AL A  A       +LG    E LR      +    + LL LW +LSL+G+ 
Sbjct: 174 LATAVTGAALIATAADYFAELLLLGRYVVERLRAAPVPPLCWRSWALLALWPLLSLMGVL 233

Query: 55  LAW 57
           + W
Sbjct: 234 VQW 236


>gi|62526120 glycolipid transfer protein domain containing 2 [Homo
          sapiens]
          Length = 291

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 26 LREWEAQDMRVTLFKLLLLWLVLSLLGIQLAWG 58
          LR W +  + + +F LLLL+L +  LG +   G
Sbjct: 10 LRHWFSHSIPLAIFALLLLYLSVRSLGARSGCG 42


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,367,962
Number of Sequences: 37866
Number of extensions: 164996
Number of successful extensions: 440
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 19
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.