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Search of human proteins with 23308537
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23308537 coiled-coil domain containing 140 [Homo sapiens]
(163 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23308537 coiled-coil domain containing 140 [Homo sapiens] 334 2e-92
gi|10190682 chromobox homolog 8 [Homo sapiens] 40 7e-04
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 39 0.002
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 37 0.006
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 37 0.006
gi|28376658 hypothetical protein LOC285172 [Homo sapiens] 37 0.008
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 37 0.010
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 36 0.013
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 36 0.013
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 36 0.013
gi|239509017 PREDICTED: hypothetical protein, partial [Homo sapi... 36 0.013
gi|22027471 neuronal PAS domain protein 2 [Homo sapiens] 35 0.022
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 35 0.022
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 35 0.029
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 35 0.029
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 34 0.064
gi|151301228 formin binding protein 3 [Homo sapiens] 34 0.064
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 33 0.11
gi|13236559 hypothetical protein LOC79169 [Homo sapiens] 33 0.11
gi|115430243 SCY1-like 1 isoform B [Homo sapiens] 33 0.14
gi|115430241 SCY1-like 1 isoform A [Homo sapiens] 33 0.14
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 33 0.14
gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens] 33 0.14
gi|55770834 centromere protein F [Homo sapiens] 33 0.14
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 33 0.14
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 33 0.14
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.14
gi|239757964 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
>gi|23308537 coiled-coil domain containing 140 [Homo sapiens]
Length = 163
Score = 334 bits (856), Expect = 2e-92
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MGDECSNPDLLAEPGSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNR 60
MGDECSNPDLLAEPGSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNR
Sbjct: 1 MGDECSNPDLLAEPGSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNR 60
Query: 61 WRRQSCQGPSPARSGQFLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRA 120
WRRQSCQGPSPARSGQFLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRA
Sbjct: 61 WRRQSCQGPSPARSGQFLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRA 120
Query: 121 ARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKERNFKK 163
ARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKERNFKK
Sbjct: 121 ARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKERNFKK 163
>gi|10190682 chromobox homolog 8 [Homo sapiens]
Length = 389
Score = 40.4 bits (93), Expect = 7e-04
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 50 AQPTKRSKRNRWRRQSCQG---PSPARSGQFLGSADLGLQRGVLKSAARTCLSEISNSTR 106
AQ ++K +R S +G P P RS Q L S S AR L + S
Sbjct: 83 AQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLAST----------SRAREGLRNMGLSPP 132
Query: 107 ASPESAQSTDPGRAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKER 159
AS S ST A R R R E E ++++ER+R +ER++ER
Sbjct: 133 ASSTSTSSTCRAEAPRDRDRDRDRDR-----ERDRERERERERERERERERER 180
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 39.3 bits (90), Expect = 0.002
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 34/128 (26%)
Query: 5 CSNPDLLAEPGSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNRWRRQ 64
C P L P +SP N+ NTR P +P+ + + R R+
Sbjct: 1369 CLAPSSLLSPEASP----------CRNDMNTRTP-----------PEPSAKQRSMRCYRK 1407
Query: 65 SCQGPSPARSGQFLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRAARPR 124
+C+ SP+ G + G +RG R S S S R S S+ S+ ++R R
Sbjct: 1408 ACRSASPSSQG-WQG------RRG------RNSRSVSSGSNRTSEASSSSSSSSSSSRSR 1454
Query: 125 TRTLPTPH 132
+R+L PH
Sbjct: 1455 SRSLSPPH 1462
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 37.4 bits (85), Expect = 0.006
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 105 TRASPESAQSTDPGRAARP---RTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKERNF 161
+R S+ S P R+ P +TR+ + S +++++ KKKKE+K+ K+ KK +
Sbjct: 1654 SRNQSHSSPSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHKKHKKH 1713
Query: 162 KK 163
KK
Sbjct: 1714 KK 1715
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 37.4 bits (85), Expect = 0.006
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 105 TRASPESAQSTDPGRAARP---RTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKERNF 161
+R S+ S P R+ P +TR+ + S +++++ KKKKE+K+ K+ KK +
Sbjct: 1688 SRNQSHSSPSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHKKHKKH 1747
Query: 162 KK 163
KK
Sbjct: 1748 KK 1749
>gi|28376658 hypothetical protein LOC285172 [Homo sapiens]
Length = 530
Score = 37.0 bits (84), Expect = 0.008
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 6 SNPDLLAEP-GSSPPWDHGNQRQEAAN----ESNTRVPRVLKAHLGPETAQPTKRSKRNR 60
S P L+A +S P+D + QE E VPR+ + TA T +R+R
Sbjct: 273 SQPLLVANAMKNSLPFDAPDSTQEGQKVLKVEVTPTVPRISR------TAITTASIRRHR 326
Query: 61 WRRQSCQGPSPARSGQFLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRA 120
WRR+ +G + L AD G G S+ S+S R S + GR+
Sbjct: 327 WRREGAEGVNGGEESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRG---SLRKVATGRS 383
Query: 121 ARPRTRTLPTPHSFKIGEEAEEMKKKKE 148
A+ + T + K E + +K+
Sbjct: 384 AKDK----ETASAIKSSESPRDSVVRKQ 407
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 36.6 bits (83), Expect = 0.010
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 4/144 (2%)
Query: 24 NQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNRWRRQSCQGPSPA---RSGQFLGS 80
N+++E E N + R + E + S+R R R + + + R
Sbjct: 174 NRQKEREREKNRQERRERERQREKENKTEDRHSERGRERERERETETETERKRQTDRERD 233
Query: 81 ADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRAARPRTRTLPTPHSFKIGEEA 140
+R K A R SE E + D R R + R T + E
Sbjct: 234 RQRKTEREREKQAERERASERETERDKERERERDRDRDRDRRQKERERQTDRKRQRRTER 293
Query: 141 E-EMKKKKERKRRKERKKERNFKK 163
+ E ++K+ER+R +ER++ERN K+
Sbjct: 294 DRETERKRERQRERERERERNRKR 317
Score = 33.1 bits (74), Expect = 0.11
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 117 PGRAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKER 159
PG PR R L H G++ E ++K+ +RR++R+ ER
Sbjct: 31 PGSQESPRRRGLGQAHKDADGDDRERNRQKERERRREKRQTER 73
Score = 26.9 bits (58), Expect = 7.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 138 EEAEEMKKKKERKRRKERKKER 159
E E +K+ER+R +ER++ER
Sbjct: 308 ERERERNRKRERERERERERER 329
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 36.2 bits (82), Expect = 0.013
Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 16/164 (9%)
Query: 11 LAEPGSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNRW-RRQSCQGP 69
L P S W R + S R PR+ ++ +RS+ RW RR+S
Sbjct: 8 LPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRS 67
Query: 70 SPARSGQFLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRAARPRTRTLP 129
P SG S G S + SE S + P S+ R AR R R L
Sbjct: 68 RPFSSGPSGPSGP--SSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLR 125
Query: 130 TPHS-------------FKIGEEAEEMKKKKERKRRKERKKERN 160
S + E +++ +ER+RR+ R R+
Sbjct: 126 RFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRS 169
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 36.2 bits (82), Expect = 0.013
Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 16/164 (9%)
Query: 11 LAEPGSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNRW-RRQSCQGP 69
L P S W R + S R PR+ ++ +RS+ RW RR+S
Sbjct: 8 LPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRS 67
Query: 70 SPARSGQFLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRAARPRTRTLP 129
P SG S G S + SE S + P S+ R AR R R L
Sbjct: 68 RPFSSGPSGPSGP--SSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLR 125
Query: 130 TPHS-------------FKIGEEAEEMKKKKERKRRKERKKERN 160
S + E +++ +ER+RR+ R R+
Sbjct: 126 RFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRS 169
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 36.2 bits (82), Expect = 0.013
Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 16/164 (9%)
Query: 11 LAEPGSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNRW-RRQSCQGP 69
L P S W R + S R PR+ ++ +RS+ RW RR+S
Sbjct: 8 LPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRS 67
Query: 70 SPARSGQFLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRAARPRTRTLP 129
P SG S G S + SE S + P S+ R AR R R L
Sbjct: 68 RPFSSGPSGPSGP--SSPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLR 125
Query: 130 TPHS-------------FKIGEEAEEMKKKKERKRRKERKKERN 160
S + E +++ +ER+RR+ R R+
Sbjct: 126 RFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRS 169
>gi|239509017 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 90
Score = 36.2 bits (82), Expect = 0.013
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 85 LQRG-VLKSAARTCLS----------EISNSTRASPESAQSTDPGRAARPRTRTLPTPHS 133
+QRG + SA TC + S+S+ +S S+ S+ R R R R
Sbjct: 1 MQRGEAVTSAPSTCFTLTPEKKEERRSRSSSSSSSSSSSSSSSRRRRRRRRRRRRRRRRR 60
Query: 134 FKIGEEAEEMKKKKERKRRKERKKERNFKK 163
+ EE KK+K++KRR+E + E KK
Sbjct: 61 RRRRRRREEKKKQKKKKRREEEEAEEEEKK 90
>gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]
Length = 824
Score = 35.4 bits (80), Expect = 0.022
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 17/115 (14%)
Query: 25 QRQEAANESNTRVPRVLKAHLGP--------ETAQPTKRSKRNRWRRQSCQGPSPARSGQ 76
QR EA + R V + LG +AQ T + S QGP P RS Q
Sbjct: 559 QRPEAQQQLQQRSAAVTQPQLGAGPQLPGQISSAQVTSQHLLRESSVISTQGPKPMRSSQ 618
Query: 77 FLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRAARPRTRTLPTP 131
+ S+ + + +S S++T A P S T P ++ ++ P+P
Sbjct: 619 LMQSSG---------RSGSSLVSPFSSATAALPPSLNLTTPASTSQDASQCQPSP 664
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 35.4 bits (80), Expect = 0.022
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 19/161 (11%)
Query: 4 ECSNPDLLAEP---GSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNR 60
E S+P L E G S P G R A+ + + R G + + K+S+++
Sbjct: 97 EASSPPLPLEKARGGLSGP-QGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDT 155
Query: 61 WRRQSCQGPSPARSGQFLGSADLGLQ--RGVLKSAARTCLSEISNSTRASPESAQSTDPG 118
R S ++ G+ + Q R +S++ + S S+S+ +S S+ S+ G
Sbjct: 156 SRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDG 215
Query: 119 RAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKER 159
R R + + + KKKK+RK+ K++ KE+
Sbjct: 216 RKKRGKYKD-------------KRRKKKKKRKKLKKKGKEK 243
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 35.0 bits (79), Expect = 0.029
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 110 ESAQSTDPGRAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKER 159
E + + G+ R R + K +E KK++ERK R+ERKKER
Sbjct: 146 ERKREKERGKRERKRKKRKKEEREKKRERNRKERKKERERKERRERKKER 195
Score = 30.8 bits (68), Expect = 0.54
Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 11/136 (8%)
Query: 29 AANESNTRVPRVLKAHLG-PETAQPTKRSKRNRWRRQSCQGPSPARSGQFLGSADLGLQR 87
AA + NT + V +H+ P T + ++R K R R + + R + R
Sbjct: 9 AAVKLNTELQMVSCSHISKPCTQRESERKKERREREKRKREREKERKRE----------R 58
Query: 88 GVLKSAARTCLSEISNSTRASPESAQSTDPGRAARPRTRTLPTPHSFKIGEEAEEMKKKK 147
G + R R E + R R R + E KKKK
Sbjct: 59 GKKEKKKRKKRERGKERERKRKEREKQRKERREKERRKRKKEKKKRERKQRGRRERKKKK 118
Query: 148 ERKRRKERKKERNFKK 163
ERK R+ K+R +K
Sbjct: 119 ERKERERENKQRRERK 134
Score = 29.3 bits (64), Expect = 1.6
Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
Query: 138 EEAEEMKK--KKERKRRKERKKER 159
+E E KK KKER+++KERKK+R
Sbjct: 186 KERRERKKERKKERRKKKERKKDR 209
Score = 28.5 bits (62), Expect = 2.7
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 119 RAARPRTRTLPTPHSFKIGEEAEEMKKKKERK--RRKERKKER 159
R R R + + ++ E K+KK RK RRKERK+E+
Sbjct: 109 RGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERKREK 151
Score = 28.5 bits (62), Expect = 2.7
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 138 EEAEEMKKKKERKRRKER-KKERNFKK 163
++ + K++KERKR KER K+ER KK
Sbjct: 136 KKRRKKKRRKERKREKERGKRERKRKK 162
Score = 28.5 bits (62), Expect = 2.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 138 EEAEEMKKKKERKRRKERKKER 159
E E ++KKERK+ + +KKER
Sbjct: 184 ERKERRERKKERKKERRKKKER 205
Score = 26.9 bits (58), Expect = 7.8
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
E + ++K++++R+K+R+KER +K
Sbjct: 126 ENKQRRERKRKKRRKKKRRKERKREK 151
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 35.0 bits (79), Expect = 0.029
Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 3/148 (2%)
Query: 13 EPGSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNRWR---RQSCQGP 69
E SPP +++EA + + + P K+ E P + + + ++ + P
Sbjct: 556 EEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSP 615
Query: 70 SPARSGQFLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRAARPRTRTLP 129
+ A+S + + K+ + T S SPE ++ P +A P
Sbjct: 616 AEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAK 675
Query: 130 TPHSFKIGEEAEEMKKKKERKRRKERKK 157
+P K +AE +K + KE K
Sbjct: 676 SPEKAKSPVKAEAKSPEKAKSPVKEEAK 703
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 33.9 bits (76), Expect = 0.064
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 105 TRASPESAQSTDPGRAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKERNFKK 163
T ++ T +T T T K E+ +E +K+KE+++ KE+KK++ KK
Sbjct: 48 TTTKKKTTTKTKKRTTTTKKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKK 106
Score = 30.4 bits (67), Expect = 0.71
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFK 162
+E E+ KKKK++K++K++KK+ N K
Sbjct: 92 KEKEKEKKKKKKKKKKKKKKKLNAK 116
Score = 30.0 bits (66), Expect = 0.92
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 95 RTCLSEISNSTRASPESAQSTDPGRAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKE 154
+T + T + +T + + RT T + + +E +K+KE+++ KE
Sbjct: 30 KTTKKKKKKKTTMKKKKKTTTKKKTTTKTKKRTTTTKKTTTTTTKEKEKEKEKEKEKEKE 89
Query: 155 RKKERNFKK 163
++KE+ +K
Sbjct: 90 KEKEKEKEK 98
Score = 30.0 bits (66), Expect = 0.92
Identities = 11/26 (42%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
E+ +E +K+KE+K++K++KK++ KK
Sbjct: 87 EKEKEKEKEKEKKKKKKKKKKKKKKK 112
Score = 28.5 bits (62), Expect = 2.7
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 125 TRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKERNFKK 163
T T K E+ +E +K+KE+++ K++KK++ KK
Sbjct: 70 TTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKK 108
Score = 28.5 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
E+ +E +K+KE++++K++KK++ KK
Sbjct: 85 EKEKEKEKEKEKEKKKKKKKKKKKKK 110
>gi|151301228 formin binding protein 3 [Homo sapiens]
Length = 930
Score = 33.9 bits (76), Expect = 0.064
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 44 HLGPETAQPTKRSKRNRWRRQSCQGPSPARSGQFLGSADLGLQRGVLKSAARTCLSEISN 103
H + + +K+SK++ +R S +RSG D ++ +S +R+ SE S+
Sbjct: 779 HHHSKNKKHSKKSKKHHRKR------SRSRSGSDSDDDDSHSKKKRQRSESRSA-SEHSS 831
Query: 104 STRASPESAQSTDPGRAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKERNFKK 163
S + +S + ++ R +P S E E+ KK+K+R+ K+R ++R+ K
Sbjct: 832 SAESERSYKKSKKHKKKSKKRRHKSDSPES---DAEREKDKKEKDRESEKDRTRQRSESK 888
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 33.1 bits (74), Expect = 0.11
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 90 LKSAARTCLSEISNSTRASPESAQSTDPGRAA--RPRTRTLPTPHSFKIGEEAEEMKKKK 147
+ S A L+ S S T PG + R R R + T K E+E K+++
Sbjct: 5 ISSRAAVKLNTELQMVSCSHISKPCTQPGWQSEIREREREIETRKEGKKERESERKKERR 64
Query: 148 ER-KRRKERKKER 159
ER KR++ER+KER
Sbjct: 65 EREKRKREREKER 77
Score = 32.7 bits (73), Expect = 0.14
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 141 EEMKKKKERKRRKERKKERNFKK 163
+E KK++ERK R+ERKKER K+
Sbjct: 194 KERKKERERKERRERKKERKKKE 216
Score = 32.3 bits (72), Expect = 0.19
Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 6/35 (17%)
Query: 135 KIGEEAEEMKKK--KERKRR----KERKKERNFKK 163
++GE+ EE K+K KERK+R KERKKER K+
Sbjct: 170 QVGEKEEERKEKERKERKKRERNRKERKKERERKE 204
Score = 32.0 bits (71), Expect = 0.24
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 138 EEAEEMKKKKERKRRKERKKER 159
E E ++KKERK+++ERKKER
Sbjct: 201 ERKERRERKKERKKKEERKKER 222
Score = 29.3 bits (64), Expect = 1.6
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
E +E ++K+ R+R+KERKK+ KK
Sbjct: 195 ERKKERERKERRERKKERKKKEERKK 220
Score = 27.7 bits (60), Expect = 4.6
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 12/36 (33%)
Query: 135 KIGEEAEEMKKK------------KERKRRKERKKE 158
K GEE E+ KKK KER+R++ERK+E
Sbjct: 107 KEGEEKEKRKKKEKKERGRTSKEGKERERKEERKRE 142
Score = 27.7 bits (60), Expect = 4.6
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
E +E KKK+ERK+ +++ ++ N+++
Sbjct: 207 ERKKERKKKEERKKERQKDRQTNWRE 232
Score = 26.9 bits (58), Expect = 7.8
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 135 KIGEEAEEMKKKKERKRRKERK----KERNFKK 163
K GE +E +++K+R+R KE K KE+ KK
Sbjct: 86 KKGERKKEERERKKRRREKENKEGEEKEKRKKK 118
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 33.1 bits (74), Expect = 0.11
Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 7/151 (4%)
Query: 9 DLLAEPGSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNRWRRQSCQG 68
D LA +SP D ++ E + PR K H ++ +R +++ + +
Sbjct: 9 DGLAPEKTSPDRDKKKEQSEVSVS-----PRASKHHYSRSRSRSRERKRKSDNEGRKHRS 63
Query: 69 PSPARSGQFLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRAARPRTRTL 128
S ++ G+ S D ++ KS S+ R S+++ + + R +
Sbjct: 64 RSRSKEGRRHESKDKSSKKH--KSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSR 121
Query: 129 PTPHSFKIGEEAEEMKKKKERKRRKERKKER 159
HS E + +ERK+ + R +ER
Sbjct: 122 GRSHSRSRSRERRHRSRSRERKKSRSRSRER 152
>gi|13236559 hypothetical protein LOC79169 [Homo sapiens]
Length = 263
Score = 33.1 bits (74), Expect = 0.11
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 21/151 (13%)
Query: 23 GNQRQEAANESNTRVPRVLKAHLGPETA--QPTKRSKRNRWRRQSCQGPSPARSGQF--- 77
G R+E L A LG + QPT SK + +G P G
Sbjct: 60 GPSREEELAAVREAEREALLAALGYKNVKKQPTGLSKEDFAEVCKREGGDPEEKGVDRLL 119
Query: 78 -LGSADLGLQRGVL----KSAARTCLSEISNSTRASPESAQSTDPGRAA-----RPRTRT 127
LGSA + R + K AA+ LS ++ +S PG +A +PR
Sbjct: 120 GLGSASGSVGRVAMSREDKEAAKLGLSVFTH------HRVESGGPGTSAASARRKPRAED 173
Query: 128 LPTPHSFKIGEEAEEMKKKKERKRRKERKKE 158
+ +E KKKK+RK +KE+KK+
Sbjct: 174 QTESSCESHRKSKKEKKKKKKRKHKKEKKKK 204
>gi|115430243 SCY1-like 1 isoform B [Homo sapiens]
Length = 791
Score = 32.7 bits (73), Expect = 0.14
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 109 PESAQSTDPGRAARPRTRTLPTPHSFK------IGEEAEEMKKKKERKRRKERKKERNFK 162
PES+ DP R T P P S+ + ++ ++K + RK+R+ER++E K
Sbjct: 713 PESSDKGDPFATLSARPSTQPRPDSWGEDNWEGLETDSRQVKAELARKKREERRREMEAK 772
Query: 163 K 163
+
Sbjct: 773 R 773
>gi|115430241 SCY1-like 1 isoform A [Homo sapiens]
Length = 808
Score = 32.7 bits (73), Expect = 0.14
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 109 PESAQSTDPGRAARPRTRTLPTPHSFK------IGEEAEEMKKKKERKRRKERKKERNFK 162
PES+ DP R T P P S+ + ++ ++K + RK+R+ER++E K
Sbjct: 730 PESSDKGDPFATLSARPSTQPRPDSWGEDNWEGLETDSRQVKAELARKKREERRREMEAK 789
Query: 163 K 163
+
Sbjct: 790 R 790
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 32.7 bits (73), Expect = 0.14
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 28 EAANESNTRVPRVLKAHLGPETAQPTKRSKRNRWRRQSCQGPSPARSGQFLGSADLGLQR 87
E+ + V VL H PE+ TK R+R R ++ S +RS S+
Sbjct: 533 ESVKLTEVPVEPVLTVH--PESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSS----- 585
Query: 88 GVLKSAARTCLSEISNSTRASPESAQSTDPGRAARPRTRTLPTPHSFKIGEEAEEMKKKK 147
S++ + S S+S+R+S S+ ST G ++R + + + + + +
Sbjct: 586 SSTSSSSGSSSSSGSSSSRSSSSSSSSTS-GSSSRDSSSSTSSSSESRSRSRGRGHNRDR 644
Query: 148 ERKRRKERKK 157
+ +R +RK+
Sbjct: 645 KHRRSVDRKR 654
>gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens]
Length = 1538
Score = 32.7 bits (73), Expect = 0.14
Identities = 23/86 (26%), Positives = 36/86 (41%)
Query: 46 GPETAQPTKRSKRNRWRRQSCQGPSPARSGQFLGSADLGLQRGVLKSAARTCLSEISNST 105
G A+ +S+R+R + G + G+ LGS GL G + T SE +
Sbjct: 661 GRSRAKVVSQSQRSRSANPAGAGSRSSSPGKLLGSGYGGLTGGSSRGPPVTPSSEKRSKI 720
Query: 106 RASPESAQSTDPGRAARPRTRTLPTP 131
S ++ T P R R+ +P P
Sbjct: 721 PRSQGCSRETSPNRIGLARSSRIPRP 746
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 32.7 bits (73), Expect = 0.14
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 90 LKSAARTCLSEISNSTRASPESAQSTDPGRAARPRTRTLPTPHSFKIGEEAEEMKKK--- 146
L+ + C SE+ S +A+ + S +P + T TP + G + E++K+K
Sbjct: 114 LEQELKRCKSELERSQQAAQSADVSLNPCNTPQKIFTTPLTPSQYYSGSKYEDLKEKYNK 173
Query: 147 --KERKRRKERKKERNFKK 163
+ERKR + K KK
Sbjct: 174 EVEERKRLEAEVKALQAKK 192
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 32.7 bits (73), Expect = 0.14
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 21/161 (13%)
Query: 6 SNPDLLAEP---GSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNRW- 61
S P A P SSPP R + R R AH+G ++ R R
Sbjct: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA-RGAMAHVGSRKRSRSRSRSRGRGS 144
Query: 62 -RRQSCQGPSPARSGQFLGSADLGLQ--RGVLKSAARTCLSEISNSTRASPESAQSTDPG 118
+R+ +R+ S + Q R +S++ + S S+S+ +S S+ S+ G
Sbjct: 145 EKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDG 204
Query: 119 RAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKER 159
R R + + + KKKK+RK+ K++ KE+
Sbjct: 205 RKKRGKYKD-------------KRRKKKKKRKKLKKKGKEK 232
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 32.7 bits (73), Expect = 0.14
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 21/161 (13%)
Query: 6 SNPDLLAEP---GSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNRW- 61
S P A P SSPP R + R R AH+G ++ R R
Sbjct: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA-RGAMAHVGSRKRSRSRSRSRGRGS 144
Query: 62 -RRQSCQGPSPARSGQFLGSADLGLQ--RGVLKSAARTCLSEISNSTRASPESAQSTDPG 118
+R+ +R+ S + Q R +S++ + S S+S+ +S S+ S+ G
Sbjct: 145 EKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDG 204
Query: 119 RAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKER 159
R R + + + KKKK+RK+ K++ KE+
Sbjct: 205 RKKRGKYKD-------------KRRKKKKKRKKLKKKGKEK 232
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.14
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 47 PETAQPTKRSKRNRWRRQSCQGPSPARSGQFLGSADLGLQRGVLKSAARTCLS-EISNST 105
P+T +P RS + C P RSG + R L +R+ S E+
Sbjct: 1490 PQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKP 1549
Query: 106 RASPESAQSTDPGRAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRR 152
ASP+ +D ++ +TRT P + G E K + RR
Sbjct: 1550 SASPQERSESDSSPDSKAKTRT-PLRQRSRSGSSPEVDSKSRLSPRR 1595
Score = 30.4 bits (67), Expect = 0.71
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 11 LAEPGSSPPWDHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNRWRRQSCQGPS 70
L++ +PP + R + +S ++P+ + P + QPTK S R S + P
Sbjct: 386 LSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVS---RHASSSPESPK 442
Query: 71 PA---RSGQFLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRAARPRTRT 127
PA S + + S+ R ++ + S+S S +S P A R R+R+
Sbjct: 443 PAPAPGSHREISSSPTSKNRSHGRAK-----RDKSHSHTPSRRMGRSRSPATAKRGRSRS 497
Query: 128 -LPTPHSFKIGEEAEEMKKKKERKRRKERKKER 159
PT + + + ++ + R +R
Sbjct: 498 RTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQR 530
Score = 28.9 bits (63), Expect = 2.1
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
Query: 46 GPETAQPTKRSKRNRW-RRQSCQGPSPARSGQFLGSADLGLQRGVLKSAARTCLSEISNS 104
G ++ T+R R+R RR SPA G+ + +RG +S +RT S S
Sbjct: 541 GWSRSRNTQRRGRSRSARRGRSHSRSPATRGR--SRSRTPARRG--RSRSRTPARRRSRS 596
Query: 105 TRASPESAQSTDPGRAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKER 159
+ ++S P R R R+RT P + + + RR R + R
Sbjct: 597 RTPTRRRSRSRTPARRGRSRSRT-PARRRSRTRSPVRRRSRSRSPARRSGRSRSR 650
Score = 27.7 bits (60), Expect = 4.6
Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 24/124 (19%)
Query: 33 SNTRVPRVLKAHLGPETAQPTKRSKRNRWRRQSCQGPSPARSGQFLGSADLGLQRGVLKS 92
S T P+ P P KR +R+ S S + S S
Sbjct: 2581 SPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSS----------------S 2624
Query: 93 AARTCLSEISNSTRASPESAQSTDPGRAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRR 152
++ + S S+S+ +S S+ S+ P A+P + LP P S K ER+ R
Sbjct: 2625 SSSSSSSSSSSSSSSSSSSSSSSSPS-PAKPGPQALPKPASPK-------KPPPGERRSR 2676
Query: 153 KERK 156
RK
Sbjct: 2677 SPRK 2680
Score = 27.3 bits (59), Expect = 6.0
Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 7/131 (5%)
Query: 32 ESNTRVPRVLKAHLGPETAQPTKRSKRNRWRRQSCQGPSPARSGQFLGSADLGLQRGVLK 91
E+ +R P + + +P ++S+ +R RR+S P + + G + RG+ +
Sbjct: 1715 ETRSRTPPRHRRSPSVSSPEPAEKSRSSR-RRRSASSPRTKTTSR-RGRSPSPKPRGLQR 1772
Query: 92 SAARTCLSEISNSTRASPESAQSTDPGRAARPRTRTLPTPH-----SFKIGEEAEEMKKK 146
S +R+ + + R + + R R R+R+ T + A + +
Sbjct: 1773 SRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSR 1832
Query: 147 KERKRRKERKK 157
+RR+ R +
Sbjct: 1833 TSSRRRRGRSR 1843
>gi|239757964 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 32.3 bits (72), Expect = 0.19
Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 15/146 (10%)
Query: 21 DHGNQRQEAANESNTRVPRVLKAHLGPETAQPTKRSKRNRWRRQSCQGPSPARSGQFLGS 80
D G +R+ + R + K G + + R R +++ +
Sbjct: 138 DRGRERERDRDREKERERQTEKDRDGQRETETERERDREREKQKERET-----------E 186
Query: 81 ADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRAARPRTRTLPTPHSFKIGEEA 140
D QR K R E + E + TD R R G+E
Sbjct: 187 RDRDRQRDTEKERERQTDRERDRQRKTQTERQRETDR-EGERETDRRRERQRDRDRGKER 245
Query: 141 E-EMKKKKERK--RRKERKKERNFKK 163
+ E +K+ERK R+KERKKER KK
Sbjct: 246 DRERDRKEERKKERKKERKKERKEKK 271
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 32.3 bits (72), Expect = 0.19
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 116 DPGRAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKERNFKK 163
D G + LP K E+ ++ KKKK++K++K++KK++ KK
Sbjct: 87 DAGPSLHLPLHGLPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKK 134
Score = 30.0 bits (66), Expect = 0.92
Identities = 11/26 (42%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
+E ++ KKKK++K++K++KK++ KK
Sbjct: 110 KEKKKKKKKKKKKKKKKKKKKKKKKK 135
Score = 30.0 bits (66), Expect = 0.92
Identities = 11/26 (42%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
E+ ++ KKKK++K++K++KK++ KK
Sbjct: 111 EKKKKKKKKKKKKKKKKKKKKKKKKK 136
Score = 29.6 bits (65), Expect = 1.2
Identities = 11/26 (42%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK++KR+++RK++R KK
Sbjct: 128 KKKKKKKKKKKKKRKRKRKRKRKRKK 153
Score = 29.6 bits (65), Expect = 1.2
Identities = 11/26 (42%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK+RKR+++RK++R K+
Sbjct: 130 KKKKKKKKKKKRKRKRKRKRKRKKKR 155
Score = 29.6 bits (65), Expect = 1.2
Identities = 11/26 (42%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ K+K++RKR+++RKK+R KK
Sbjct: 134 KKKKKKKRKRKRKRKRKRKKKRKKKK 159
Score = 28.5 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK++K++K++KK++ KK
Sbjct: 112 KKKKKKKKKKKKKKKKKKKKKKKKKK 137
Score = 28.5 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK++K++K++KK++ KK
Sbjct: 113 KKKKKKKKKKKKKKKKKKKKKKKKKK 138
Score = 28.5 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK++K++K++KK++ KK
Sbjct: 114 KKKKKKKKKKKKKKKKKKKKKKKKKK 139
Score = 28.5 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK++K++K++KK++ KK
Sbjct: 115 KKKKKKKKKKKKKKKKKKKKKKKKKK 140
Score = 28.5 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK++K++K++KK+R K+
Sbjct: 120 KKKKKKKKKKKKKKKKKKKKKRKRKR 145
Score = 28.5 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK++K++K+RK++R K+
Sbjct: 124 KKKKKKKKKKKKKKKKKRKRKRKRKR 149
Score = 28.5 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKK++RKR+++RK+++ KK
Sbjct: 132 KKKKKKKKKRKRKRKRKRKRKKKRKK 157
Score = 27.3 bits (59), Expect = 6.0
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK++K++K++KK++ K+
Sbjct: 116 KKKKKKKKKKKKKKKKKKKKKKKKKR 141
Score = 27.3 bits (59), Expect = 6.0
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK++K++K++KK++ +K
Sbjct: 117 KKKKKKKKKKKKKKKKKKKKKKKKRK 142
Score = 27.3 bits (59), Expect = 6.0
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK++K++K++KK++ K+
Sbjct: 118 KKKKKKKKKKKKKKKKKKKKKKKRKR 143
Score = 27.3 bits (59), Expect = 6.0
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK++K++K++KK++ +K
Sbjct: 119 KKKKKKKKKKKKKKKKKKKKKKRKRK 144
Score = 27.3 bits (59), Expect = 6.0
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 138 EEAEEMKKKKERKRRKERKKERNFKK 163
++ ++ KKKK++K++++RK++R K+
Sbjct: 126 KKKKKKKKKKKKKKKRKRKRKRKRKR 151
Score = 26.9 bits (58), Expect = 7.8
Identities = 11/55 (20%), Positives = 29/55 (52%)
Query: 109 PESAQSTDPGRAARPRTRTLPTPHSFKIGEEAEEMKKKKERKRRKERKKERNFKK 163
P+ + + + + + + K ++ ++ KKKK++++RK ++K + KK
Sbjct: 100 PQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKK 154
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.125 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,492,854
Number of Sequences: 37866
Number of extensions: 349735
Number of successful extensions: 4445
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 3277
Number of HSP's gapped (non-prelim): 1020
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.